Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	dataset	type	classification	start	end	gene	chr	ref_allele	tum_allele1	tum_allele2	context
ADAMTSL3	57188	hgsc.bcm.edu	36	15	82442881	82442881	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-24-1556-01	TCGA-24-1556-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	82442881	82442881	ADAMTSL3	15	A	A	T	2
ANGPT4	51378	hgsc.bcm.edu	36	20	844772	844772	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1556-01	TCGA-24-1556-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	844772	844772	ANGPT4	20	G	G	A	38
ARHGAP25	9938	hgsc.bcm.edu	36	2	68906740	68906740	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-1556-01	TCGA-24-1556-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	68906740	68906740	ARHGAP25	2	C	C	T	22
ATF7IP2	80063	hgsc.bcm.edu	36	16	10432514	10432514	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-1556-01	TCGA-24-1556-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	10432514	10432514	ATF7IP2	16	A	A	G	7
FAM196A	642938	hgsc.bcm.edu	36	10	128864305	128864305	+	Nonsense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1556-01	TCGA-24-1556-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Nonsense_Mutation	SNP	128864305	128864305	FAM196A	10	G	G	T	44
C1orf141	400757	hgsc.bcm.edu	36	1	67333678	67333678	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-1556-01	TCGA-24-1556-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	67333678	67333678	C1orf141	1	T	T	C	55
C20orf70	140683	hgsc.bcm.edu	36	20	31224428	31224428	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1556-01	TCGA-24-1556-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	31224428	31224428	C20orf70	20	G	G	C	35
FAM193A	8603	hgsc.bcm.edu	36	4	2666651	2666651	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-24-1556-01	TCGA-24-1556-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	2666651	2666651	FAM193A	4	C	C	A	27
C5orf23	79614	hgsc.bcm.edu	36	5	32825578	32825578	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1556-01	TCGA-24-1556-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	32825578	32825578	C5orf23	5	G	G	T	43
C5orf41	153222	hgsc.bcm.edu	36	5	172450336	172450336	+	Frame_Shift_Del	DEL	C	C	-	novel	Unknown	TCGA-24-1556-01	TCGA-24-1556-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Frame_Shift_Del	DEL	172450336	172450336	C5orf41	5	C	C	-	28
C6orf134	79969	hgsc.bcm.edu	36	6	30717948	30717948	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-1556-01	TCGA-24-1556-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	30717948	30717948	C6orf134	6	G	G	A	46
CCDC123	84902	hgsc.bcm.edu	36	19	38142646	38142646	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1556-01	TCGA-24-1556-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	38142646	38142646	CCDC123	19	C	C	A	23
CHD6	84181	hgsc.bcm.edu	36	20	39475435	39475435	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-24-1556-01	TCGA-24-1556-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	39475435	39475435	CHD6	20	C	C	G	25
COL7A1	1294	hgsc.bcm.edu	36	3	48577600	48577601	+	Frame_Shift_Ins	INS	-	-	GG	novel	Unknown	TCGA-24-1556-01	TCGA-24-1556-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Frame_Shift_Ins	INS	48577600	48577601	COL7A1	3	-	-	GG	11
COMMD9	29099	hgsc.bcm.edu	36	11	36252823	36252823	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1556-01	TCGA-24-1556-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	36252823	36252823	COMMD9	11	G	G	C	36
CTSL3	392360	hgsc.bcm.edu	36	9	89578282	89578282	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-1556-01	TCGA-24-1556-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	89578282	89578282	CTSL3	9	A	A	G	4
D4S234E	27065	hgsc.bcm.edu	36	4	4444175	4444175	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1556-01	TCGA-24-1556-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	4444175	4444175	D4S234E	4	G	G	C	45
DDX55	57696	hgsc.bcm.edu	36	12	122656610	122656610	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-1556-01	TCGA-24-1556-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	122656610	122656610	DDX55	12	C	C	G	22
EPB41L3	23136	hgsc.bcm.edu	36	18	5406037	5406037	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-24-1556-01	TCGA-24-1556-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	5406037	5406037	EPB41L3	18	A	A	T	11
EPHA3	2042	hgsc.bcm.edu	36	3	89582131	89582131	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-24-1556-01	TCGA-24-1556-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	89582131	89582131	EPHA3	3	T	T	G	60
FAT2	2196	hgsc.bcm.edu	36	5	150903283	150903283	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1556-01	TCGA-24-1556-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	150903283	150903283	FAT2	5	G	G	C	43
GREB1	9687	hgsc.bcm.edu	36	2	11633945	11633945	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1556-01	TCGA-24-1556-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	11633945	11633945	GREB1	2	G	G	T	48
GSS	2937	hgsc.bcm.edu	36	20	32988441	32988441	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-1556-01	TCGA-24-1556-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	32988441	32988441	GSS	20	C	C	G	29
HMG20A	10363	hgsc.bcm.edu	36	15	75550436	75550436	+	Nonsense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1556-01	TCGA-24-1556-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Nonsense_Mutation	SNP	75550436	75550436	HMG20A	15	C	C	T	25
HRNR	388697	hgsc.bcm.edu	36	1	150462353	150462353	+	Frame_Shift_Del	DEL	T	T	-	novel	Unknown	TCGA-24-1556-01	TCGA-24-1556-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Frame_Shift_Del	DEL	150462353	150462353	HRNR	1	T	T	-	52
IKBKE	9641	hgsc.bcm.edu	36	1	204724975	204724975	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-24-1556-01	TCGA-24-1556-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	204724975	204724975	IKBKE	1	A	A	G	9
IL17RC	84818	hgsc.bcm.edu	36	3	9949300	9949300	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-1556-01	TCGA-24-1556-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	9949300	9949300	IL17RC	3	A	A	G	5
IL2RA	3559	hgsc.bcm.edu	36	10	6144075	6144075	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-1556-01	TCGA-24-1556-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	6144075	6144075	IL2RA	10	C	C	G	18
KHNYN	23351	hgsc.bcm.edu	36	14	23971894	23971894	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-1556-01	TCGA-24-1556-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	23971894	23971894	KHNYN	14	C	C	T	29
KIAA1409	57578	hgsc.bcm.edu	36	14	93129916	93129916	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1556-01	TCGA-24-1556-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Nonsense_Mutation	SNP	93129916	93129916	KIAA1409	14	G	G	A	47
LMX1A	4009	hgsc.bcm.edu	36	1	163588975	163588975	+	Nonsense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1556-01	TCGA-24-1556-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Nonsense_Mutation	SNP	163588975	163588975	LMX1A	1	G	G	T	44
MACF1	23499	hgsc.bcm.edu	36	1	39668235	39668235	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1556-01	TCGA-24-1556-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	39668235	39668235	MACF1	1	G	G	C	39
MED13L	23389	hgsc.bcm.edu	36	12	114906387	114906387	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-24-1556-01	TCGA-24-1556-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	114906387	114906387	MED13L	12	T	T	G	56
MPHOSPH8	54737	hgsc.bcm.edu	36	13	19122279	19122282	+	Frame_Shift_Del	DEL	AAAC	AAAC	-	novel	Unknown	TCGA-24-1556-01	TCGA-24-1556-10	AAAC	AAAC	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Frame_Shift_Del	DEL	19122279	19122282	MPHOSPH8	13	AAAC	AAAC	-	1
MTOR	2475	hgsc.bcm.edu	36	1	11195520	11195520	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1556-01	TCGA-24-1556-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	11195520	11195520	MTOR	1	G	G	C	44
MTOR	2475	hgsc.bcm.edu	36	1	11195530	11195530	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-24-1556-01	TCGA-24-1556-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	11195530	11195530	MTOR	1	A	A	T	1
MYH1	4619	hgsc.bcm.edu	36	17	10352551	10352551	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-24-1556-01	TCGA-24-1556-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	10352551	10352551	MYH1	17	T	T	A	59
NCKIPSD	51517	hgsc.bcm.edu	36	3	48695362	48695362	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1556-01	TCGA-24-1556-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	48695362	48695362	NCKIPSD	3	G	G	C	35
NR1I2	8856	hgsc.bcm.edu	36	3	121014352	121014352	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1556-01	TCGA-24-1556-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	121014352	121014352	NR1I2	3	G	G	T	43
NRAP	4892	hgsc.bcm.edu	36	10	115413581	115413581	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-1556-01	TCGA-24-1556-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	115413581	115413581	NRAP	10	C	C	T	32
OTUD4	54726	hgsc.bcm.edu	36	4	146312272	146312272	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1556-01	TCGA-24-1556-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	146312272	146312272	OTUD4	4	C	C	A	24
PDZRN4	29951	hgsc.bcm.edu	36	12	40252443	40252445	+	In_Frame_Del	DEL	AAG	AAG	-	novel	Unknown	TCGA-24-1556-01	TCGA-24-1556-10	AAG	AAG	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	In_Frame_Del	DEL	40252443	40252445	PDZRN4	12	AAG	AAG	-	5
PHF19	26147	hgsc.bcm.edu	36	9	122672620	122672620	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1556-01	TCGA-24-1556-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	122672620	122672620	PHF19	9	C	C	T	30
PIK3C2B	5287	hgsc.bcm.edu	36	1	202670323	202670323	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-1556-01	TCGA-24-1556-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	202670323	202670323	PIK3C2B	1	A	A	G	7
PMS1	5378	hgsc.bcm.edu	36	2	190416992	190416992	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-1556-01	TCGA-24-1556-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	190416992	190416992	PMS1	2	C	C	T	32
POU2F1	5451	hgsc.bcm.edu	36	1	165648050	165648050	+	Frame_Shift_Del	DEL	G	G	-	novel	Unknown	TCGA-24-1556-01	TCGA-24-1556-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Frame_Shift_Del	DEL	165648050	165648050	POU2F1	1	G	G	-	34
PRMT5	10419	hgsc.bcm.edu	36	14	22465845	22465845	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-24-1556-01	TCGA-24-1556-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	22465845	22465845	PRMT5	14	A	A	T	3
PRRG3	79057	hgsc.bcm.edu	36	X	150619985	150619985	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-24-1556-01	TCGA-24-1556-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	150619985	150619985	PRRG3	23	A	A	T	6
QSOX2	169714	hgsc.bcm.edu	36	9	138253546	138253547	+	Frame_Shift_Del	DEL	TT	TT	-	novel	Unknown	TCGA-24-1556-01	TCGA-24-1556-10	TT	TT	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Frame_Shift_Del	DEL	138253546	138253547	QSOX2	9	TT	TT	-	56
RNF220	55182	hgsc.bcm.edu	36	1	44650948	44650948	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1556-01	TCGA-24-1556-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	44650948	44650948	RNF220	1	G	G	T	34
RNPS1	10921	hgsc.bcm.edu	36	16	2254219	2254219	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-24-1556-01	TCGA-24-1556-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	2254219	2254219	RNPS1	16	G	G	C	43
SF1	7536	hgsc.bcm.edu	36	11	64294341	64294341	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-1556-01	TCGA-24-1556-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	64294341	64294341	SF1	11	C	C	G	25
SH3BP4	23677	hgsc.bcm.edu	36	2	235614424	235614424	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-24-1556-01	TCGA-24-1556-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	235614424	235614424	SH3BP4	2	A	A	T	11
SIN3B	23309	hgsc.bcm.edu	36	19	16813586	16813586	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1556-01	TCGA-24-1556-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	16813586	16813586	SIN3B	19	C	C	T	31
SLC17A6	57084	hgsc.bcm.edu	36	11	22348227	22348227	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-24-1556-01	TCGA-24-1556-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	22348227	22348227	SLC17A6	11	T	T	G	56
SLC34A2	10568	hgsc.bcm.edu	36	4	25276954	25276954	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-24-1556-01	TCGA-24-1556-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	25276954	25276954	SLC34A2	4	C	C	A	24
SLC6A2	6530	hgsc.bcm.edu	36	16	54263578	54263578	+	Nonsense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1556-01	TCGA-24-1556-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Nonsense_Mutation	SNP	54263578	54263578	SLC6A2	16	G	G	T	37
SYNE1	23345	hgsc.bcm.edu	36	6	152739225	152739225	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1556-01	TCGA-24-1556-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	152739225	152739225	SYNE1	6	C	C	A	20
SYNE2	23224	hgsc.bcm.edu	36	14	63666294	63666294	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-1556-01	TCGA-24-1556-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	63666294	63666294	SYNE2	14	C	C	T	26
TGFBR2	7048	hgsc.bcm.edu	36	3	30688465	30688465	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1556-01	TCGA-24-1556-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	30688465	30688465	TGFBR2	3	G	G	C	34
TNFRSF10A	8797	hgsc.bcm.edu	36	8	23105437	23105437	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-24-1556-01	TCGA-24-1556-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	23105437	23105437	TNFRSF10A	8	G	G	T	37
TP53	7157	hgsc.bcm.edu	36	17	7517652	7517652	+	Splice_Site_SNP	SNP	C	C	T	novel	Unknown	TCGA-24-1556-01	TCGA-24-1556-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Splice_Site_SNP	SNP	7517652	7517652	TP53	17	C	C	T	28
TUFM	7284	hgsc.bcm.edu	36	16	28763585	28763585	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-24-1556-01	TCGA-24-1556-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	28763585	28763585	TUFM	16	T	T	G	59
VAV1	7409	hgsc.bcm.edu	36	19	6779827	6779827	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-1556-01	TCGA-24-1556-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	6779827	6779827	VAV1	19	A	A	G	10
VCL	7414	hgsc.bcm.edu	36	10	75527073	75527073	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1556-01	TCGA-24-1556-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	75527073	75527073	VCL	10	C	C	T	30
VPS33A	65082	hgsc.bcm.edu	36	12	121311781	121311781	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1556-01	TCGA-24-1556-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Nonsense_Mutation	SNP	121311781	121311781	VPS33A	12	C	C	A	30
WDR49	151790	hgsc.bcm.edu	36	3	168733444	168733444	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-24-1556-01	TCGA-24-1556-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	168733444	168733444	WDR49	3	T	T	G	62
ZFYVE26	23503	hgsc.bcm.edu	36	14	67321709	67321709	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1556-01	TCGA-24-1556-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	67321709	67321709	ZFYVE26	14	C	C	A	26