Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer dataset type classification start end gene chr ref_allele tum_allele1 tum_allele2 context AKNAD1 254268 broad.mit.edu 36 1 109196514 109196514 + Missense_Mutation SNP G G A novel Unknown TCGA-24-1603-01 TCGA-24-1603-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 109196514 109196514 AKNAD1 1 G G A 46 CHRM3 1131 broad.mit.edu 36 1 238137855 238137855 + Missense_Mutation SNP G G T novel Unknown TCGA-24-1603-01 TCGA-24-1603-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 238137855 238137855 CHRM3 1 G G T 44 OR4A5 81318 broad.mit.edu 36 11 51268246 51268246 + Silent SNP G G C novel Unknown TCGA-24-1603-01 TCGA-24-1603-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 51268246 51268246 OR4A5 11 G G C 39 ST14 6768 broad.mit.edu 36 11 129563297 129563297 + Missense_Mutation SNP C C T novel Unknown TCGA-24-1603-01 TCGA-24-1603-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 129563297 129563297 ST14 11 C C T 27 POLE2 5427 broad.mit.edu 36 14 49210610 49210610 + Missense_Mutation SNP C C T novel Unknown TCGA-24-1603-01 TCGA-24-1603-10 C T C C Unknown Valid Somatic x x Sequenom_PCR_WGA x Broad Missense_Mutation SNP 49210610 49210610 POLE2 14 C C T 31 TTYH2 94015 broad.mit.edu 36 17 69760870 69760870 + Missense_Mutation SNP C C T novel Unknown TCGA-24-1603-01 TCGA-24-1603-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 69760870 69760870 TTYH2 17 C C T 27 RTTN 25914 broad.mit.edu 36 18 65835628 65835628 + Missense_Mutation SNP G G C novel Unknown TCGA-24-1603-01 TCGA-24-1603-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 65835628 65835628 RTTN 18 G G C 34 RAVER1 125950 broad.mit.edu 36 19 10292538 10292538 + Silent SNP C C T novel Unknown TCGA-24-1603-01 TCGA-24-1603-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 10292538 10292538 RAVER1 19 C C T 21 LDLR 3949 broad.mit.edu 36 19 11079140 11079140 + Missense_Mutation SNP A A G novel Unknown TCGA-24-1603-01 TCGA-24-1603-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 11079140 11079140 LDLR 19 A A G 2 DPF1 8193 broad.mit.edu 36 19 43394803 43394803 + Nonsense_Mutation SNP G G T novel Unknown TCGA-24-1603-01 TCGA-24-1603-10 Unknown Unknown Unknown x x --- x Broad Nonsense_Mutation SNP 43394803 43394803 DPF1 19 G G T 44 CD79A 973 broad.mit.edu 36 19 47075547 47075547 + Missense_Mutation SNP C C T novel Unknown TCGA-24-1603-01 TCGA-24-1603-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 47075547 47075547 CD79A 19 C C T 19 ITPRIPL1 150771 broad.mit.edu 36 2 96356443 96356443 + Missense_Mutation SNP G G T novel Unknown TCGA-24-1603-01 TCGA-24-1603-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 96356443 96356443 ITPRIPL1 2 G G T 42 CACNB4 785 broad.mit.edu 36 2 152404090 152404090 + Missense_Mutation SNP T T A novel Unknown TCGA-24-1603-01 TCGA-24-1603-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 152404090 152404090 CACNB4 2 T T A 62 SNAI1 6615 broad.mit.edu 36 20 48037849 48037849 + Missense_Mutation SNP G G A novel Unknown TCGA-24-1603-01 TCGA-24-1603-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 48037849 48037849 SNAI1 20 G G A 40 GRIK1 2897 broad.mit.edu 36 21 29945421 29945421 + Missense_Mutation SNP C C T novel Unknown TCGA-24-1603-01 TCGA-24-1603-10 C T C C Unknown Valid Somatic x x Sequenom_PCR_WGA x Broad Missense_Mutation SNP 29945421 29945421 GRIK1 21 C C T 23 WDR4 10785 broad.mit.edu 36 21 43143305 43143305 + Missense_Mutation SNP G G A novel Unknown TCGA-24-1603-01 TCGA-24-1603-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 43143305 43143305 WDR4 21 G G A 38 ADCY2 108 broad.mit.edu 36 5 7855364 7855364 + Missense_Mutation SNP G G A novel Unknown TCGA-24-1603-01 TCGA-24-1603-10 G A G G Unknown Valid Somatic x x Sequenom_PCR_WGA x Broad Missense_Mutation SNP 7855364 7855364 ADCY2 5 G G A 40 LNPEP 4012 broad.mit.edu 36 5 96354552 96354552 + Silent SNP T T C novel Unknown TCGA-24-1603-01 TCGA-24-1603-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 96354552 96354552 LNPEP 5 T T C 64 DST 667 broad.mit.edu 36 6 56604714 56604714 + Missense_Mutation SNP G G T novel Unknown TCGA-24-1603-01 TCGA-24-1603-10 G T G G Unknown Valid Somatic x x Sequenom_PCR_WGA x Broad Missense_Mutation SNP 56604714 56604714 DST 6 G G T 34 LATS1 9113 broad.mit.edu 36 6 150043217 150043217 + Missense_Mutation SNP G G A novel Unknown TCGA-24-1603-01 TCGA-24-1603-10 G A G G Unknown Valid Somatic x x Sequenom_PCR_WGA x Broad Missense_Mutation SNP 150043217 150043217 LATS1 6 G G A 39 DNAH11 8701 broad.mit.edu 36 7 21754771 21754771 + Missense_Mutation SNP G G T novel Unknown TCGA-24-1603-01 TCGA-24-1603-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 21754771 21754771 DNAH11 7 G G T 47 DOCK4 9732 broad.mit.edu 36 7 111327807 111327807 + Missense_Mutation SNP C C G novel Unknown TCGA-24-1603-01 TCGA-24-1603-10 C G C C Unknown Valid Somatic x x Sequenom_PCR_WGA x Broad Missense_Mutation SNP 111327807 111327807 DOCK4 7 C C G 21 SPTAN1 6709 broad.mit.edu 36 9 130426519 130426519 + Missense_Mutation SNP C C T novel Unknown TCGA-24-1603-01 TCGA-24-1603-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 130426519 130426519 SPTAN1 9 C C T 27 TSC1 7248 broad.mit.edu 36 9 134767960 134767960 + Silent SNP C C T novel Unknown TCGA-24-1603-01 TCGA-24-1603-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 134767960 134767960 TSC1 9 C C T 32 KLHL4 56062 broad.mit.edu 36 X 86775431 86775431 + Missense_Mutation SNP T T A novel Unknown TCGA-24-1603-01 TCGA-24-1603-10 T A T T Unknown Valid Somatic x x Sequenom_PCR_WGA x Broad Missense_Mutation SNP 86775431 86775431 KLHL4 23 T T A 57 TP53 7157 broad.mit.edu 36 17 7517625 7517626 + Frame_Shift_Ins INS - A A novel Unknown TCGA-24-1603-01 TCGA-24-1603-10 A A - - Unknown Valid Somatic Phase_I Capture Illumina GAIIx Broad Frame_Shift_Ins INS 7517625 7517626 TP53 17 - A A 41 RNF213 57674 broad.mit.edu 36 17 75935684 75935684 + Frame_Shift_Del DEL G - - novel Unknown TCGA-24-1603-01 TCGA-24-1603-10 Unknown Unknown Unknown Phase_I Capture --- Illumina GAIIx Broad Frame_Shift_Del DEL 75935684 75935684 RNF213 17 G - - 35 FAM47A 158724 broad.mit.edu 36 X 34059579 34059614 + In_Frame_Del DEL ATGGGACACTCCAGTCTCTGGAGGCTCCGGGCGGAG - ATGGGACACTCCAGTCTCTGGAGGCTCCGGGCGGAG novel Unknown TCGA-24-1603-01 TCGA-24-1603-10 Unknown Unknown Unknown Phase_I Capture --- Illumina GAIIx Broad In_Frame_Del DEL 34059579 34059614 FAM47A 23 ATGGGACACTCCAGTCTCTGGAGGCTCCGGGCGGAG - ATGGGACACTCCAGTCTCTGGAGGCTCCGGGCGGAG 16