Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer dataset type classification start end gene chr ref_allele tum_allele1 tum_allele2 context VPS13D 55187 broad.mit.edu 36 1 12480139 12480139 + Splice_Site_SNP SNP A A G novel Unknown TCGA-24-2267-01 TCGA-24-2267-11 Unknown Unknown Unknown x x --- x Broad Splice_Site_SNP SNP 12480139 12480139 VPS13D 1 A A G 15 ACTL8 81569 broad.mit.edu 36 1 18024900 18024900 + Nonsense_Mutation SNP C C T novel Unknown TCGA-24-2267-01 TCGA-24-2267-11 Unknown Unknown Unknown x x --- x Broad Nonsense_Mutation SNP 18024900 18024900 ACTL8 1 C C T 25 ZMYM6 9204 broad.mit.edu 36 1 35253011 35253011 + Silent SNP T T C novel Unknown TCGA-24-2267-01 TCGA-24-2267-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 35253011 35253011 ZMYM6 1 T T C 52 LHX8 431707 broad.mit.edu 36 1 75395266 75395266 + Missense_Mutation SNP C C A novel Unknown TCGA-24-2267-01 TCGA-24-2267-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 75395266 75395266 LHX8 1 C C A 21 HSD3B2 3284 broad.mit.edu 36 1 119766472 119766472 + Silent SNP T T C novel Unknown TCGA-24-2267-01 TCGA-24-2267-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 119766472 119766472 HSD3B2 1 T T C 63 LINGO4 339398 broad.mit.edu 36 1 150040530 150040530 + Silent SNP T T C novel Unknown TCGA-24-2267-01 TCGA-24-2267-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 150040530 150040530 LINGO4 1 T T C 55 IVL 3713 broad.mit.edu 36 1 151149425 151149425 + Silent SNP G G A rs11205136 byCluster;by2Hit2Allele TCGA-24-2267-01 TCGA-24-2267-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 151149425 151149425 IVL 1 G G A 39 KIAA1614 57710 broad.mit.edu 36 1 179153627 179153627 + Missense_Mutation SNP G G T novel Unknown TCGA-24-2267-01 TCGA-24-2267-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 179153627 179153627 KIAA1614 1 G G T 48 C1orf25 81627 broad.mit.edu 36 1 183379689 183379689 + Missense_Mutation SNP A A G novel Unknown TCGA-24-2267-01 TCGA-24-2267-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 183379689 183379689 C1orf25 1 A A G 15 CUL2 8453 broad.mit.edu 36 10 35389826 35389826 + Missense_Mutation SNP T T C novel Unknown TCGA-24-2267-01 TCGA-24-2267-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 35389826 35389826 CUL2 10 T T C 49 FAM13C 220965 broad.mit.edu 36 10 60753766 60753766 + Missense_Mutation SNP C C T novel Unknown TCGA-24-2267-01 TCGA-24-2267-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 60753766 60753766 FAM13C 10 C C T 31 MYOF 26509 broad.mit.edu 36 10 95113795 95113795 + Silent SNP G G A novel Unknown TCGA-24-2267-01 TCGA-24-2267-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 95113795 95113795 MYOF 10 G G A 48 PLCE1 51196 broad.mit.edu 36 10 95781564 95781564 + Silent SNP C C T novel Unknown TCGA-24-2267-01 TCGA-24-2267-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 95781564 95781564 PLCE1 10 C C T 17 CC2D2B 387707 broad.mit.edu 36 10 97781668 97781668 + Missense_Mutation SNP A A C novel Unknown TCGA-24-2267-01 TCGA-24-2267-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 97781668 97781668 CC2D2B 10 A A C 4 DNTT 1791 broad.mit.edu 36 10 98054410 98054410 + Missense_Mutation SNP G G T novel Unknown TCGA-24-2267-01 TCGA-24-2267-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 98054410 98054410 DNTT 10 G G T 42 UBQLN3 50613 broad.mit.edu 36 11 5486049 5486049 + Missense_Mutation SNP G G A novel Unknown TCGA-24-2267-01 TCGA-24-2267-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 5486049 5486049 UBQLN3 11 G G A 48 DCHS1 8642 broad.mit.edu 36 11 6617809 6617809 + Missense_Mutation SNP A A T novel Unknown TCGA-24-2267-01 TCGA-24-2267-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 6617809 6617809 DCHS1 11 A A T 15 OR5B2 390190 broad.mit.edu 36 11 57947077 57947077 + Missense_Mutation SNP C C A novel Unknown TCGA-24-2267-01 TCGA-24-2267-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 57947077 57947077 OR5B2 11 C C A 24 NRXN2 9379 broad.mit.edu 36 11 64172824 64172824 + Missense_Mutation SNP C C T novel Unknown TCGA-24-2267-01 TCGA-24-2267-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 64172824 64172824 NRXN2 11 C C T 31 GSTP1 2950 broad.mit.edu 36 11 67110474 67110474 + Silent SNP G G T novel Unknown TCGA-24-2267-01 TCGA-24-2267-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 67110474 67110474 GSTP1 11 G G T 45 KCNE3 10008 broad.mit.edu 36 11 73845994 73845994 + Missense_Mutation SNP C C A rs17221833 Unknown TCGA-24-2267-01 TCGA-24-2267-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 73845994 73845994 KCNE3 11 C C A 19 ALKBH8 91801 broad.mit.edu 36 11 106908244 106908244 + Missense_Mutation SNP C C G novel Unknown TCGA-24-2267-01 TCGA-24-2267-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 106908244 106908244 ALKBH8 11 C C G 30 KIRREL3 84623 broad.mit.edu 36 11 125811947 125811947 + Silent SNP G G A novel Unknown TCGA-24-2267-01 TCGA-24-2267-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 125811947 125811947 KIRREL3 11 G G A 39 LRRC23 10233 broad.mit.edu 36 12 6885137 6885137 + Missense_Mutation SNP G G C novel Unknown TCGA-24-2267-01 TCGA-24-2267-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 6885137 6885137 LRRC23 12 G G C 33 GUCY2C 2984 broad.mit.edu 36 12 14740583 14740583 + Missense_Mutation SNP T T C novel Unknown TCGA-24-2267-01 TCGA-24-2267-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 14740583 14740583 GUCY2C 12 T T C 53 SOX5 6660 broad.mit.edu 36 12 23940208 23940208 + Missense_Mutation SNP G G C novel Unknown TCGA-24-2267-01 TCGA-24-2267-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 23940208 23940208 SOX5 12 G G C 47 OR6C1 390321 broad.mit.edu 36 12 54001088 54001088 + Silent SNP T T G novel Unknown TCGA-24-2267-01 TCGA-24-2267-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 54001088 54001088 OR6C1 12 T T G 56 ARL11 115761 broad.mit.edu 36 13 49102630 49102630 + Missense_Mutation SNP G G T novel Unknown TCGA-24-2267-01 TCGA-24-2267-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 49102630 49102630 ARL11 13 G G T 44 MYO16 23026 broad.mit.edu 36 13 108502774 108502774 + Missense_Mutation SNP A A G novel Unknown TCGA-24-2267-01 TCGA-24-2267-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 108502774 108502774 MYO16 13 A A G 10 PAPLN 89932 broad.mit.edu 36 14 72800793 72800793 + Missense_Mutation SNP A A G novel Unknown TCGA-24-2267-01 TCGA-24-2267-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 72800793 72800793 PAPLN 14 A A G 8 SERPINA9 327657 broad.mit.edu 36 14 93999249 93999249 + Missense_Mutation SNP C C A novel Unknown TCGA-24-2267-01 TCGA-24-2267-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 93999249 93999249 SERPINA9 14 C C A 29 ATP10A 57194 broad.mit.edu 36 15 23477097 23477097 + Missense_Mutation SNP C C A novel Unknown TCGA-24-2267-01 TCGA-24-2267-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 23477097 23477097 ATP10A 15 C C A 27 MAP1A 4130 broad.mit.edu 36 15 41601496 41601496 + Missense_Mutation SNP G G A novel Unknown TCGA-24-2267-01 TCGA-24-2267-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 41601496 41601496 MAP1A 15 G G A 40 FAM63B 54629 broad.mit.edu 36 15 56851602 56851602 + Missense_Mutation SNP G G A novel Unknown TCGA-24-2267-01 TCGA-24-2267-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 56851602 56851602 FAM63B 15 G G A 41 UNC45A 55898 broad.mit.edu 36 15 89286832 89286832 + Silent SNP C C T novel Unknown TCGA-24-2267-01 TCGA-24-2267-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 89286832 89286832 UNC45A 15 C C T 29 TBL3 10607 broad.mit.edu 36 16 1964217 1964217 + Missense_Mutation SNP C C T novel Unknown TCGA-24-2267-01 TCGA-24-2267-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 1964217 1964217 TBL3 16 C C T 25 MEFV 4210 broad.mit.edu 36 16 3233272 3233272 + Missense_Mutation SNP T T G novel Unknown TCGA-24-2267-01 TCGA-24-2267-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 3233272 3233272 MEFV 16 T T G 59 NLRC3 197358 broad.mit.edu 36 16 3538756 3538756 + Splice_Site_SNP SNP T T C novel Unknown TCGA-24-2267-01 TCGA-24-2267-11 Unknown Unknown Unknown x x --- x Broad Splice_Site_SNP SNP 3538756 3538756 NLRC3 16 T T C 53 MYH11 4629 broad.mit.edu 36 16 15783761 15783761 + Silent SNP G G A novel Unknown TCGA-24-2267-01 TCGA-24-2267-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 15783761 15783761 MYH11 16 G G A 40 ABCC11 85320 broad.mit.edu 36 16 46785294 46785294 + Silent SNP C C T novel Unknown TCGA-24-2267-01 TCGA-24-2267-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 46785294 46785294 ABCC11 16 C C T 23 TRPV3 162514 broad.mit.edu 36 17 3374353 3374353 + Silent SNP G G A novel Unknown TCGA-24-2267-01 TCGA-24-2267-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 3374353 3374353 TRPV3 17 G G A 48 SLC2A4 6517 broad.mit.edu 36 17 7128314 7128314 + Missense_Mutation SNP G G C novel Unknown TCGA-24-2267-01 TCGA-24-2267-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 7128314 7128314 SLC2A4 17 G G C 43 DNAH9 1770 broad.mit.edu 36 17 11545237 11545237 + Missense_Mutation SNP C C A novel Unknown TCGA-24-2267-01 TCGA-24-2267-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 11545237 11545237 DNAH9 17 C C A 20 MYOCD 93649 broad.mit.edu 36 17 12580341 12580341 + Missense_Mutation SNP C C T novel Unknown TCGA-24-2267-01 TCGA-24-2267-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 12580341 12580341 MYOCD 17 C C T 29 NLE1 54475 broad.mit.edu 36 17 30484579 30484579 + Missense_Mutation SNP C C A novel Unknown TCGA-24-2267-01 TCGA-24-2267-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 30484579 30484579 NLE1 17 C C A 18 ARL4D 379 broad.mit.edu 36 17 38832676 38832676 + Missense_Mutation SNP C C G novel Unknown TCGA-24-2267-01 TCGA-24-2267-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 38832676 38832676 ARL4D 17 C C G 22 STXBP4 252983 broad.mit.edu 36 17 50418585 50418585 + Missense_Mutation SNP T T G novel Unknown TCGA-24-2267-01 TCGA-24-2267-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 50418585 50418585 STXBP4 17 T T G 49 TUBD1 51174 broad.mit.edu 36 17 55292559 55292559 + Missense_Mutation SNP A A G novel Unknown TCGA-24-2267-01 TCGA-24-2267-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 55292559 55292559 TUBD1 17 A A G 4 TSPAN10 83882 broad.mit.edu 36 17 77225421 77225421 + Missense_Mutation SNP G G T novel Unknown TCGA-24-2267-01 TCGA-24-2267-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 77225421 77225421 TSPAN10 17 G G T 48 TGIF1 7050 broad.mit.edu 36 18 3446474 3446474 + Missense_Mutation SNP G G T novel Unknown TCGA-24-2267-01 TCGA-24-2267-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 3446474 3446474 TGIF1 18 G G T 48 DSC1 1823 broad.mit.edu 36 18 26968040 26968040 + Missense_Mutation SNP G G A novel Unknown TCGA-24-2267-01 TCGA-24-2267-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 26968040 26968040 DSC1 18 G G A 33 INSR 3643 broad.mit.edu 36 19 7218483 7218483 + Missense_Mutation SNP G G T novel Unknown TCGA-24-2267-01 TCGA-24-2267-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 7218483 7218483 INSR 19 G G T 48 RAB3D 9545 broad.mit.edu 36 19 11307127 11307127 + Silent SNP G G A novel Unknown TCGA-24-2267-01 TCGA-24-2267-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 11307127 11307127 RAB3D 19 G G A 44 SLC35E1 79939 broad.mit.edu 36 19 16538361 16538361 + Silent SNP G G A novel Unknown TCGA-24-2267-01 TCGA-24-2267-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 16538361 16538361 SLC35E1 19 G G A 41 KPTN 11133 broad.mit.edu 36 19 52675858 52675858 + Silent SNP G G A novel Unknown TCGA-24-2267-01 TCGA-24-2267-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 52675858 52675858 KPTN 19 G G A 33 CLEC11A 6320 broad.mit.edu 36 19 55920406 55920406 + Missense_Mutation SNP A A C novel Unknown TCGA-24-2267-01 TCGA-24-2267-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 55920406 55920406 CLEC11A 19 A A C 8 NBAS 51594 broad.mit.edu 36 2 15247963 15247963 + Missense_Mutation SNP T T A novel Unknown TCGA-24-2267-01 TCGA-24-2267-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 15247963 15247963 NBAS 2 T T A 51 APOB 338 broad.mit.edu 36 2 21083983 21083983 + Missense_Mutation SNP G G T novel Unknown TCGA-24-2267-01 TCGA-24-2267-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 21083983 21083983 APOB 2 G G T 46 OTOF 9381 broad.mit.edu 36 2 26540401 26540401 + Missense_Mutation SNP G G A novel Unknown TCGA-24-2267-01 TCGA-24-2267-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 26540401 26540401 OTOF 2 G G A 39 CIB4 130106 broad.mit.edu 36 2 26671623 26671623 + Missense_Mutation SNP C C T novel Unknown TCGA-24-2267-01 TCGA-24-2267-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 26671623 26671623 CIB4 2 C C T 17 ALK 238 broad.mit.edu 36 2 29996838 29996838 + Missense_Mutation SNP G G T novel Unknown TCGA-24-2267-01 TCGA-24-2267-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 29996838 29996838 ALK 2 G G T 41 FANCL 55120 broad.mit.edu 36 2 58240432 58240432 + Missense_Mutation SNP G G A novel Unknown TCGA-24-2267-01 TCGA-24-2267-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 58240432 58240432 FANCL 2 G G A 44 PUS10 150962 broad.mit.edu 36 2 61089571 61089571 + Missense_Mutation SNP T T G novel Unknown TCGA-24-2267-01 TCGA-24-2267-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 61089571 61089571 PUS10 2 T T G 64 SCTR 6344 broad.mit.edu 36 2 119947568 119947568 + Missense_Mutation SNP C C A novel Unknown TCGA-24-2267-01 TCGA-24-2267-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 119947568 119947568 SCTR 2 C C A 18 IFIH1 64135 broad.mit.edu 36 2 162852935 162852935 + Missense_Mutation SNP T T C rs35207787 Unknown TCGA-24-2267-01 TCGA-24-2267-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 162852935 162852935 IFIH1 2 T T C 62 COBLL1 22837 broad.mit.edu 36 2 165259032 165259032 + Missense_Mutation SNP G G C novel Unknown TCGA-24-2267-01 TCGA-24-2267-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 165259032 165259032 COBLL1 2 G G C 33 HNRNPA3 220988 broad.mit.edu 36 2 177790721 177790721 + Missense_Mutation SNP G G T novel Unknown TCGA-24-2267-01 TCGA-24-2267-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 177790721 177790721 HNRNPA3 2 G G T 42 ZNF142 7701 broad.mit.edu 36 2 219217803 219217803 + Silent SNP C C G novel Unknown TCGA-24-2267-01 TCGA-24-2267-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 219217803 219217803 ZNF142 2 C C G 29 UGT1A3 54659 broad.mit.edu 36 2 234303353 234303353 + Missense_Mutation SNP G G C novel Unknown TCGA-24-2267-01 TCGA-24-2267-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 234303353 234303353 UGT1A3 2 G G C 48 ACSS1 84532 broad.mit.edu 36 20 24959592 24959592 + Missense_Mutation SNP T T A novel Unknown TCGA-24-2267-01 TCGA-24-2267-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 24959592 24959592 ACSS1 20 T T A 62 ASPHD2 57168 broad.mit.edu 36 22 25159725 25159725 + Silent SNP C C T novel Unknown TCGA-24-2267-01 TCGA-24-2267-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 25159725 25159725 ASPHD2 22 C C T 23 TBC1D10A 83874 broad.mit.edu 36 22 29030527 29030527 + Missense_Mutation SNP T T C novel Unknown TCGA-24-2267-01 TCGA-24-2267-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 29030527 29030527 TBC1D10A 22 T T C 59 PISD 23761 broad.mit.edu 36 22 30345655 30345655 + Silent SNP A A G novel Unknown TCGA-24-2267-01 TCGA-24-2267-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 30345655 30345655 PISD 22 A A G 4 TCF20 6942 broad.mit.edu 36 22 40939690 40939690 + Silent SNP G G C novel Unknown TCGA-24-2267-01 TCGA-24-2267-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 40939690 40939690 TCF20 22 G G C 34 SBF1 6305 broad.mit.edu 36 22 49249688 49249688 + Missense_Mutation SNP C C G novel Unknown TCGA-24-2267-01 TCGA-24-2267-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 49249688 49249688 SBF1 22 C C G 23 MITF 4286 broad.mit.edu 36 3 70096797 70096797 + Missense_Mutation SNP A A C novel Unknown TCGA-24-2267-01 TCGA-24-2267-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 70096797 70096797 MITF 3 A A C 2 C3orf37 56941 broad.mit.edu 36 3 130506330 130506330 + Missense_Mutation SNP C C G novel Unknown TCGA-24-2267-01 TCGA-24-2267-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 130506330 130506330 C3orf37 3 C C G 24 CHST2 9435 broad.mit.edu 36 3 144323520 144323520 + Missense_Mutation SNP C C T novel Unknown TCGA-24-2267-01 TCGA-24-2267-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 144323520 144323520 CHST2 3 C C T 28 VPS8 23355 broad.mit.edu 36 3 186068536 186068536 + Missense_Mutation SNP A A G novel Unknown TCGA-24-2267-01 TCGA-24-2267-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 186068536 186068536 VPS8 3 A A G 11 TEC 7006 broad.mit.edu 36 4 47835491 47835491 + Missense_Mutation SNP G G A novel Unknown TCGA-24-2267-01 TCGA-24-2267-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 47835491 47835491 TEC 4 G G A 39 KIT 3815 broad.mit.edu 36 4 55299430 55299430 + Missense_Mutation SNP G G A novel Unknown TCGA-24-2267-01 TCGA-24-2267-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 55299430 55299430 KIT 4 G G A 39 GK2 2712 broad.mit.edu 36 4 80547531 80547531 + Missense_Mutation SNP C C A novel Unknown TCGA-24-2267-01 TCGA-24-2267-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 80547531 80547531 GK2 4 C C A 25 TNFAIP8 25816 broad.mit.edu 36 5 118756677 118756677 + Missense_Mutation SNP A A C novel Unknown TCGA-24-2267-01 TCGA-24-2267-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 118756677 118756677 TNFAIP8 5 A A C 11 C5orf48 389320 broad.mit.edu 36 5 125999734 125999734 + Missense_Mutation SNP C C G novel Unknown TCGA-24-2267-01 TCGA-24-2267-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 125999734 125999734 C5orf48 5 C C G 22 PCDHB2 56133 broad.mit.edu 36 5 140456591 140456591 + Missense_Mutation SNP C C T novel Unknown TCGA-24-2267-01 TCGA-24-2267-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 140456591 140456591 PCDHB2 5 C C T 27 PCDHB7 56129 broad.mit.edu 36 5 140533502 140533502 + Missense_Mutation SNP T T C novel Unknown TCGA-24-2267-01 TCGA-24-2267-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 140533502 140533502 PCDHB7 5 T T C 56 ZNF318 24149 broad.mit.edu 36 6 43414883 43414883 + Missense_Mutation SNP C C T novel Unknown TCGA-24-2267-01 TCGA-24-2267-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 43414883 43414883 ZNF318 6 C C T 32 GSTA2 2939 broad.mit.edu 36 6 52729051 52729051 + Missense_Mutation SNP T T A novel Unknown TCGA-24-2267-01 TCGA-24-2267-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 52729051 52729051 GSTA2 6 T T A 49 GARS 2617 broad.mit.edu 36 7 30622130 30622130 + Missense_Mutation SNP G G T novel Unknown TCGA-24-2267-01 TCGA-24-2267-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 30622130 30622130 GARS 7 G G T 48 PPP1R9A 55607 broad.mit.edu 36 7 94665648 94665648 + Missense_Mutation SNP G G C novel Unknown TCGA-24-2267-01 TCGA-24-2267-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 94665648 94665648 PPP1R9A 7 G G C 45 ZNF655 79027 broad.mit.edu 36 7 99008893 99008893 + Missense_Mutation SNP A A G novel Unknown TCGA-24-2267-01 TCGA-24-2267-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 99008893 99008893 ZNF655 7 A A G 9 RINT1 60561 broad.mit.edu 36 7 104974656 104974656 + Silent SNP T T G novel Unknown TCGA-24-2267-01 TCGA-24-2267-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 104974656 104974656 RINT1 7 T T G 53 NDUFB2 4708 broad.mit.edu 36 7 140051180 140051180 + Missense_Mutation SNP A A G novel Unknown TCGA-24-2267-01 TCGA-24-2267-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 140051180 140051180 NDUFB2 7 A A G 16 OR2F2 135948 broad.mit.edu 36 7 143263352 143263352 + Missense_Mutation SNP T T A novel Unknown TCGA-24-2267-01 TCGA-24-2267-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 143263352 143263352 OR2F2 7 T T A 56 ZNF425 155054 broad.mit.edu 36 7 148432494 148432494 + Missense_Mutation SNP T T G novel Unknown TCGA-24-2267-01 TCGA-24-2267-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 148432494 148432494 ZNF425 7 T T G 64 PAXIP1 22976 broad.mit.edu 36 7 154391719 154391719 + Missense_Mutation SNP A A C novel Unknown TCGA-24-2267-01 TCGA-24-2267-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 154391719 154391719 PAXIP1 7 A A C 12 SNAI2 6591 broad.mit.edu 36 8 49995233 49995233 + Missense_Mutation SNP T T C novel Unknown TCGA-24-2267-01 TCGA-24-2267-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 49995233 49995233 SNAI2 8 T T C 63 TMEM68 137695 broad.mit.edu 36 8 56831423 56831423 + Missense_Mutation SNP T T C novel Unknown TCGA-24-2267-01 TCGA-24-2267-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 56831423 56831423 TMEM68 8 T T C 61 IMPAD1 54928 broad.mit.edu 36 8 58041306 58041306 + Missense_Mutation SNP G G C novel Unknown TCGA-24-2267-01 TCGA-24-2267-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 58041306 58041306 IMPAD1 8 G G C 34 MPDZ 8777 broad.mit.edu 36 9 13178816 13178816 + Silent SNP C C A novel Unknown TCGA-24-2267-01 TCGA-24-2267-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 13178816 13178816 MPDZ 9 C C A 30 ADAMTSL1 92949 broad.mit.edu 36 9 18494910 18494910 + Silent SNP C C T novel Unknown TCGA-24-2267-01 TCGA-24-2267-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 18494910 18494910 ADAMTSL1 9 C C T 27 KIAA1797 54914 broad.mit.edu 36 9 20730325 20730325 + Silent SNP T T C novel Unknown TCGA-24-2267-01 TCGA-24-2267-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 20730325 20730325 KIAA1797 9 T T C 57 IFNA4 3441 broad.mit.edu 36 9 21177176 21177176 + Silent SNP G G A novel Unknown TCGA-24-2267-01 TCGA-24-2267-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 21177176 21177176 IFNA4 9 G G A 35 COL15A1 1306 broad.mit.edu 36 9 100868987 100868987 + Silent SNP G G T novel Unknown TCGA-24-2267-01 TCGA-24-2267-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 100868987 100868987 COL15A1 9 G G T 46 RNF20 56254 broad.mit.edu 36 9 103346886 103346886 + Silent SNP G G A novel Unknown TCGA-24-2267-01 TCGA-24-2267-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 103346886 103346886 RNF20 9 G G A 35 CEP110 11064 broad.mit.edu 36 9 122917289 122917289 + Missense_Mutation SNP A A C novel Unknown TCGA-24-2267-01 TCGA-24-2267-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 122917289 122917289 CEP110 9 A A C 5 PIR 8544 broad.mit.edu 36 X 15407826 15407826 + Missense_Mutation SNP T T C novel Unknown TCGA-24-2267-01 TCGA-24-2267-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 15407826 15407826 PIR 23 T T C 61 DMD 1756 broad.mit.edu 36 X 31075420 31075420 + Missense_Mutation SNP G G T novel Unknown TCGA-24-2267-01 TCGA-24-2267-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 31075420 31075420 DMD 23 G G T 34 XAGE5 170627 broad.mit.edu 36 X 52860880 52860880 + Nonsense_Mutation SNP C C A novel Unknown TCGA-24-2267-01 TCGA-24-2267-11 Unknown Unknown Unknown x x --- x Broad Nonsense_Mutation SNP 52860880 52860880 XAGE5 23 C C A 29 NKAP 79576 broad.mit.edu 36 X 118961340 118961340 + Missense_Mutation SNP G G A novel Unknown TCGA-24-2267-01 TCGA-24-2267-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 118961340 118961340 NKAP 23 G G A 38 STAG2 10735 broad.mit.edu 36 X 123027771 123027771 + Missense_Mutation SNP A A T novel Unknown TCGA-24-2267-01 TCGA-24-2267-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 123027771 123027771 STAG2 23 A A T 9 ODZ1 10178 broad.mit.edu 36 X 123603388 123603388 + Missense_Mutation SNP T T A novel Unknown TCGA-24-2267-01 TCGA-24-2267-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 123603388 123603388 ODZ1 23 T T A 60 GPR112 139378 broad.mit.edu 36 X 135313105 135313105 + Missense_Mutation SNP T T G novel Unknown TCGA-24-2267-01 TCGA-24-2267-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 135313105 135313105 GPR112 23 T T G 59 ATP11C 286410 broad.mit.edu 36 X 138729162 138729162 + Splice_Site_SNP SNP C C T novel Unknown TCGA-24-2267-01 TCGA-24-2267-11 Unknown Unknown Unknown x x --- x Broad Splice_Site_SNP SNP 138729162 138729162 ATP11C 23 C C T 18 G6PD 2539 broad.mit.edu 36 X 153414085 153414085 + Missense_Mutation SNP C C A novel Unknown TCGA-24-2267-01 TCGA-24-2267-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 153414085 153414085 G6PD 23 C C A 27 TP53 7157 broad.mit.edu 36 17 7517813 7517813 + Frame_Shift_Del DEL T - T novel Unknown TCGA-24-2267-01 TCGA-24-2267-11 Unknown Unknown Unknown Phase_I Capture --- Illumina GAIIx Broad Frame_Shift_Del DEL 7517813 7517813 TP53 17 T - T 59