Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer dataset type classification start end gene chr ref_allele tum_allele1 tum_allele2 context ACY1 95 hgsc.bcm.edu 36 3 51995533 51995534 + Frame_Shift_Ins INS - - TG novel Unknown TCGA-25-1317-01 TCGA-25-1317-10 - - . . . . Unknown Unknown Somatic Phase_IV Capture Unknown . . SOLID Baylor Frame_Shift_Ins INS 51995533 51995534 ACY1 3 - - TG 24 AMBRA1 55626 hgsc.bcm.edu 36 11 46396117 46396117 + Missense_Mutation SNP G G C novel Unknown TCGA-25-1317-01 TCGA-25-1317-10 G G . . . . Unknown Unknown Somatic Phase_IV Capture Unknown . . SOLID Baylor Missense_Mutation SNP 46396117 46396117 AMBRA1 11 G G C 33 ANKRD24 170961 hgsc.bcm.edu 36 19 4161079 4161079 + Frame_Shift_Del DEL C C - novel Unknown TCGA-25-1317-01 TCGA-25-1317-10 C C . . . . Unknown Unknown Somatic Phase_IV Capture Unknown . . SOLID Baylor Frame_Shift_Del DEL 4161079 4161079 ANKRD24 19 C C - 25 ASB12 142689 hgsc.bcm.edu 36 X 63361015 63361015 + Missense_Mutation SNP C C A novel Unknown TCGA-25-1317-01 TCGA-25-1317-10 C C . . . . Unknown Unknown Somatic Phase_IV Capture Unknown . . SOLID Baylor Missense_Mutation SNP 63361015 63361015 ASB12 23 C C A 24 ATP4A 495 hgsc.bcm.edu 36 19 40737908 40737908 + Missense_Mutation SNP C C T novel Unknown TCGA-25-1317-01 TCGA-25-1317-10 C C . . . . Unknown Unknown Somatic Phase_IV Capture Unknown . . SOLID Baylor Missense_Mutation SNP 40737908 40737908 ATP4A 19 C C T 22 C2CD3 26005 hgsc.bcm.edu 36 11 73467044 73467044 + Missense_Mutation SNP T T G novel Unknown TCGA-25-1317-01 TCGA-25-1317-10 T T . . . . Unknown Unknown Somatic Phase_IV Capture Unknown . . SOLID Baylor Missense_Mutation SNP 73467044 73467044 C2CD3 11 T T G 62 CAMK4 814 hgsc.bcm.edu 36 5 110847810 110847810 + Missense_Mutation SNP C C T novel Unknown TCGA-25-1317-01 TCGA-25-1317-10 C C C T C C Unknown Valid Somatic Phase_IV Capture 454_PCR_WGA . . SOLID Baylor Missense_Mutation SNP 110847810 110847810 CAMK4 5 C C T 25 CAPN12 147968 hgsc.bcm.edu 36 19 43926452 43926452 + Missense_Mutation SNP G G A novel Unknown TCGA-25-1317-01 TCGA-25-1317-10 G G . . . . Unknown Unknown Somatic Phase_IV Capture Unknown . . SOLID Baylor Missense_Mutation SNP 43926452 43926452 CAPN12 19 G G A 39 CDH24 64403 hgsc.bcm.edu 36 14 22588718 22588718 + Missense_Mutation SNP G G C novel Unknown TCGA-25-1317-01 TCGA-25-1317-10 G G . . . . Unknown Unknown Somatic Phase_IV Capture Unknown . . SOLID Baylor Missense_Mutation SNP 22588718 22588718 CDH24 14 G G C 41 CHD6 84181 hgsc.bcm.edu 36 20 39518018 39518018 + Missense_Mutation SNP T T C novel Unknown TCGA-25-1317-01 TCGA-25-1317-10 T T . . . . Unknown Unknown Somatic Phase_IV Capture Unknown . . SOLID Baylor Missense_Mutation SNP 39518018 39518018 CHD6 20 T T C 64 CHRNB1 1140 hgsc.bcm.edu 36 17 7299395 7299395 + Silent SNP G G A novel Unknown TCGA-25-1317-01 TCGA-25-1317-10 G G . . . . Unknown Unknown Somatic Phase_IV Capture Unknown . . SOLID Baylor Silent SNP 7299395 7299395 CHRNB1 17 G G A 39 DIP2A 23181 hgsc.bcm.edu 36 21 46786195 46786195 + Missense_Mutation SNP C C T novel Unknown TCGA-25-1317-01 TCGA-25-1317-10 C C . . . . Unknown Unknown Somatic Phase_IV Capture Unknown . . SOLID Baylor Missense_Mutation SNP 46786195 46786195 DIP2A 21 C C T 29 DPF3 8110 hgsc.bcm.edu 36 14 72289787 72289787 + Missense_Mutation SNP C C T novel Unknown TCGA-25-1317-01 TCGA-25-1317-10 C C . . . . Unknown Unknown Somatic Phase_IV Capture Unknown . . SOLID Baylor Missense_Mutation SNP 72289787 72289787 DPF3 14 C C T 27 DYNC2H1 79659 hgsc.bcm.edu 36 11 102563321 102563321 + Missense_Mutation SNP A A C novel Unknown TCGA-25-1317-01 TCGA-25-1317-10 A A . . . . Unknown Unknown Somatic Phase_IV Capture Unknown . . SOLID Baylor Missense_Mutation SNP 102563321 102563321 DYNC2H1 11 A A C 1 DYX1C1 161582 hgsc.bcm.edu 36 15 53510211 53510211 + Nonsense_Mutation SNP A A T novel Unknown TCGA-25-1317-01 TCGA-25-1317-10 A A . . . . Unknown Unknown Somatic Phase_IV Capture Unknown . . SOLID Baylor Nonsense_Mutation SNP 53510211 53510211 DYX1C1 15 A A T 5 E2F7 144455 hgsc.bcm.edu 36 12 75968547 75968547 + Missense_Mutation SNP T T G novel Unknown TCGA-25-1317-01 TCGA-25-1317-10 T T . . . . Unknown Unknown Somatic Phase_IV Capture Unknown . . SOLID Baylor Missense_Mutation SNP 75968547 75968547 E2F7 12 T T G 56 EXTL3 2137 hgsc.bcm.edu 36 8 28631636 28631636 + Missense_Mutation SNP C C A novel Unknown TCGA-25-1317-01 TCGA-25-1317-10 C C . . . . Unknown Unknown Somatic Phase_IV Capture Unknown . . SOLID Baylor Missense_Mutation SNP 28631636 28631636 EXTL3 8 C C A 22 FAM151B 167555 hgsc.bcm.edu 36 5 79851401 79851401 + Missense_Mutation SNP T T G novel Unknown TCGA-25-1317-01 TCGA-25-1317-10 T T . . . . Unknown Unknown Somatic Phase_IV Capture Unknown . . SOLID Baylor Missense_Mutation SNP 79851401 79851401 FAM151B 5 T T G 64 FMNL3 91010 hgsc.bcm.edu 36 12 48333864 48333864 + Missense_Mutation SNP C C T novel Unknown TCGA-25-1317-01 TCGA-25-1317-10 C C . . . . Unknown Unknown Somatic Phase_IV Capture Unknown . . SOLID Baylor Missense_Mutation SNP 48333864 48333864 FMNL3 12 C C T 19 GCN1L1 10985 hgsc.bcm.edu 36 12 119105831 119105831 + Missense_Mutation SNP A A C novel Unknown TCGA-25-1317-01 TCGA-25-1317-10 A A . . . . Unknown Unknown Somatic Phase_IV Capture Unknown . . SOLID Baylor Missense_Mutation SNP 119105831 119105831 GCN1L1 12 A A C 5 HHATL 57467 hgsc.bcm.edu 36 3 42709609 42709609 + Missense_Mutation SNP A A G novel Unknown TCGA-25-1317-01 TCGA-25-1317-10 A A . . . . Unknown Unknown Somatic Phase_IV Capture Unknown . . SOLID Baylor Missense_Mutation SNP 42709609 42709609 HHATL 3 A A G 4 HIST1H3G 8355 hgsc.bcm.edu 36 6 26379302 26379302 + Missense_Mutation SNP C C A novel Unknown TCGA-25-1317-01 TCGA-25-1317-10 C C . . . . Unknown Unknown Somatic Phase_IV Capture Unknown . . SOLID Baylor Missense_Mutation SNP 26379302 26379302 HIST1H3G 6 C C A 25 JMJD5 79831 hgsc.bcm.edu 36 16 27129006 27129006 + Missense_Mutation SNP G G T novel Unknown TCGA-25-1317-01 TCGA-25-1317-10 G G . . . . Unknown Unknown Somatic Phase_IV Capture Unknown . . SOLID Baylor Missense_Mutation SNP 27129006 27129006 JMJD5 16 G G T 42 KRTAP27-1 643812 hgsc.bcm.edu 36 21 30631311 30631311 + Missense_Mutation SNP G G A novel Unknown TCGA-25-1317-01 TCGA-25-1317-10 G G . . . . Unknown Unknown Somatic Phase_IV Capture Unknown . . SOLID Baylor Missense_Mutation SNP 30631311 30631311 KRTAP27-1 21 G G A 42 LIN9 286826 hgsc.bcm.edu 36 1 224563500 224563501 + In_Frame_Ins INS - - TGC novel Unknown TCGA-25-1317-01 TCGA-25-1317-10 - - . . . . Unknown Unknown Somatic Phase_IV Capture Unknown . . SOLID Baylor In_Frame_Ins INS 224563500 224563501 LIN9 1 - - TGC 38 MKX 283078 hgsc.bcm.edu 36 10 28004277 28004277 + Missense_Mutation SNP T T C novel Unknown TCGA-25-1317-01 TCGA-25-1317-10 T T . . . . Unknown Unknown Somatic Phase_IV Capture Unknown . . SOLID Baylor Missense_Mutation SNP 28004277 28004277 MKX 10 T T C 64 MOGAT1 116255 hgsc.bcm.edu 36 2 223261438 223261439 + Frame_Shift_Del DEL AA AA - novel Unknown TCGA-25-1317-01 TCGA-25-1317-10 AA AA . . . . Unknown Unknown Somatic Phase_IV Capture Unknown . . SOLID Baylor Frame_Shift_Del DEL 223261438 223261439 MOGAT1 2 AA AA - 5 MUC6 4588 hgsc.bcm.edu 36 11 1006041 1006042 + Frame_Shift_Ins INS - - C novel Unknown TCGA-25-1317-01 TCGA-25-1317-10 - - . . . . Unknown Unknown Somatic Phase_IV Capture Unknown . . SOLID Baylor Frame_Shift_Ins INS 1006041 1006042 MUC6 11 - - C 58 MYO7B 4648 hgsc.bcm.edu 36 2 128109807 128109807 + Missense_Mutation SNP G G A novel Unknown TCGA-25-1317-01 TCGA-25-1317-10 G G . . . . Unknown Unknown Somatic Phase_IV Capture Unknown . . SOLID Baylor Missense_Mutation SNP 128109807 128109807 MYO7B 2 G G A 39 NBEAL2 23218 hgsc.bcm.edu 36 3 47022703 47022703 + Missense_Mutation SNP G G T novel Unknown TCGA-25-1317-01 TCGA-25-1317-10 G G . . . . Unknown Unknown Somatic Phase_IV Capture Unknown . . SOLID Baylor Missense_Mutation SNP 47022703 47022703 NBEAL2 3 G G T 42 NMUR2 56923 hgsc.bcm.edu 36 5 151764321 151764321 + Missense_Mutation SNP T T A novel Unknown TCGA-25-1317-01 TCGA-25-1317-10 T T . . . . Unknown Unknown Somatic Phase_IV Capture Unknown . . SOLID Baylor Missense_Mutation SNP 151764321 151764321 NMUR2 5 T T A 55 ODZ2 57451 hgsc.bcm.edu 36 5 167622010 167622010 + Frame_Shift_Del DEL A A - novel Unknown TCGA-25-1317-01 TCGA-25-1317-10 A A . . . . Unknown Unknown Somatic Phase_IV Capture Unknown . . SOLID Baylor Frame_Shift_Del DEL 167622010 167622010 ODZ2 5 A A - 9 OR8B4 283162 hgsc.bcm.edu 36 11 123799338 123799338 + Missense_Mutation SNP C C A novel Unknown TCGA-25-1317-01 TCGA-25-1317-10 C C . . . . Unknown Unknown Somatic Phase_IV Capture Unknown . . SOLID Baylor Missense_Mutation SNP 123799338 123799338 OR8B4 11 C C A 19 PGAP1 80055 hgsc.bcm.edu 36 2 197445444 197445444 + Missense_Mutation SNP A A C novel Unknown TCGA-25-1317-01 TCGA-25-1317-10 A A . . . . Unknown Unknown Somatic Phase_IV Capture Unknown . . SOLID Baylor Missense_Mutation SNP 197445444 197445444 PGAP1 2 A A C 1 PITX2 5308 hgsc.bcm.edu 36 4 111773602 111773602 + Missense_Mutation SNP A A C novel Unknown TCGA-25-1317-01 TCGA-25-1317-10 A A . . . . Unknown Unknown Somatic Phase_IV Capture Unknown . . SOLID Baylor Missense_Mutation SNP 111773602 111773602 PITX2 4 A A C 8 PPP2R4 5524 hgsc.bcm.edu 36 9 130931116 130931116 + Missense_Mutation SNP C C T novel Unknown TCGA-25-1317-01 TCGA-25-1317-10 C C C T C C Unknown Valid Somatic Phase_IV Capture Sanger_PCR_WGA . . SOLID Baylor Missense_Mutation SNP 130931116 130931116 PPP2R4 9 C C T 19 PSMC4 5704 hgsc.bcm.edu 36 19 45177589 45177589 + Silent SNP G G A novel Unknown TCGA-25-1317-01 TCGA-25-1317-10 G G . . . . Unknown Unknown Somatic Phase_IV Capture Unknown . . SOLID Baylor Silent SNP 45177589 45177589 PSMC4 19 G G A 39 PTPRC 5788 hgsc.bcm.edu 36 1 196952466 196952470 + Frame_Shift_Del DEL ATCAA ATCAA - novel Unknown TCGA-25-1317-01 TCGA-25-1317-10 ATCAA ATCAA . . . . Unknown Unknown Somatic Phase_IV Capture Unknown . . SOLID Baylor Frame_Shift_Del DEL 196952466 196952470 PTPRC 1 ATCAA ATCAA - 12 PTPRD 5789 hgsc.bcm.edu 36 9 8461015 8461015 + Missense_Mutation SNP C C T novel Unknown TCGA-25-1317-01 TCGA-25-1317-10 C C C T C C Unknown Valid Somatic Phase_IV Capture 454_PCR_WGA . . SOLID Baylor Missense_Mutation SNP 8461015 8461015 PTPRD 9 C C T 32 SCG5 6447 hgsc.bcm.edu 36 15 30776074 30776074 + Missense_Mutation SNP T T C novel Unknown TCGA-25-1317-01 TCGA-25-1317-10 T T . . . . Unknown Unknown Somatic Phase_IV Capture Unknown . . SOLID Baylor Missense_Mutation SNP 30776074 30776074 SCG5 15 T T C 64 SIGLEC7 27036 hgsc.bcm.edu 36 19 56340935 56340935 + Silent SNP C C T novel Unknown TCGA-25-1317-01 TCGA-25-1317-10 C C . . . . Unknown Unknown Somatic Phase_IV Capture Unknown . . SOLID Baylor Silent SNP 56340935 56340935 SIGLEC7 19 C C T 32 SPATA21 374955 hgsc.bcm.edu 36 1 16608712 16608712 + Silent SNP G G A novel Unknown TCGA-25-1317-01 TCGA-25-1317-10 G G . . . . Unknown Unknown Somatic Phase_IV Capture Unknown . . SOLID Baylor Silent SNP 16608712 16608712 SPATA21 1 G G A 38 STAG3 10734 hgsc.bcm.edu 36 7 99617665 99617665 + Silent SNP T T C novel Unknown TCGA-25-1317-01 TCGA-25-1317-10 T T . . . . Unknown Unknown Somatic Phase_IV Capture Unknown . . SOLID Baylor Silent SNP 99617665 99617665 STAG3 7 T T C 60 TAF6L 10629 hgsc.bcm.edu 36 11 62299862 62299862 + Missense_Mutation SNP G G A novel Unknown TCGA-25-1317-01 TCGA-25-1317-10 G G . . . . Unknown Unknown Somatic Phase_IV Capture Unknown . . SOLID Baylor Missense_Mutation SNP 62299862 62299862 TAF6L 11 G G A 41 TBCD 6904 hgsc.bcm.edu 36 17 78483848 78483848 + Missense_Mutation SNP C C G novel Unknown TCGA-25-1317-01 TCGA-25-1317-10 C C . . . . Unknown Unknown Somatic Phase_IV Capture Unknown . . SOLID Baylor Missense_Mutation SNP 78483848 78483848 TBCD 17 C C G 28 TFAP4 7023 hgsc.bcm.edu 36 16 4252653 4252653 + Missense_Mutation SNP C C T novel Unknown TCGA-25-1317-01 TCGA-25-1317-10 C C . . . . Unknown Unknown Somatic Phase_IV Capture Unknown . . SOLID Baylor Missense_Mutation SNP 4252653 4252653 TFAP4 16 C C T 23 TP53 7157 hgsc.bcm.edu 36 17 7518273 7518273 + Missense_Mutation SNP C C A novel Unknown TCGA-25-1317-01 TCGA-25-1317-10 C C . . . . Unknown Unknown Somatic Phase_IV Capture Unknown . . SOLID Baylor Missense_Mutation SNP 7518273 7518273 TP53 17 C C A 23 TTK 7272 hgsc.bcm.edu 36 6 80808616 80808616 + Frame_Shift_Del DEL A A - novel Unknown TCGA-25-1317-01 TCGA-25-1317-10 A A . . . . Unknown Unknown Somatic Phase_IV Capture Unknown . . SOLID Baylor Frame_Shift_Del DEL 80808616 80808616 TTK 6 A A - 9 UTP14A 10813 hgsc.bcm.edu 36 X 128887752 128887752 + Missense_Mutation SNP T T A novel Unknown TCGA-25-1317-01 TCGA-25-1317-10 T T . . . . Unknown Unknown Somatic Phase_IV Capture Unknown . . SOLID Baylor Missense_Mutation SNP 128887752 128887752 UTP14A 23 T T A 59 VWF 7450 hgsc.bcm.edu 36 12 5947587 5947587 + Missense_Mutation SNP C C T novel Unknown TCGA-25-1317-01 TCGA-25-1317-10 C C . . . . Unknown Unknown Somatic Phase_IV Capture Unknown . . SOLID Baylor Missense_Mutation SNP 5947587 5947587 VWF 12 C C T 21 WNT16 51384 hgsc.bcm.edu 36 7 120759114 120759115 + Frame_Shift_Ins INS - - G novel Unknown TCGA-25-1317-01 TCGA-25-1317-10 - - . . . . Unknown Unknown Somatic Phase_IV Capture Unknown . . SOLID Baylor Frame_Shift_Ins INS 120759114 120759115 WNT16 7 - - G 55 ZFP106 64397 hgsc.bcm.edu 36 15 40521625 40521625 + Missense_Mutation SNP T T C novel Unknown TCGA-25-1317-01 TCGA-25-1317-10 T T . . . . Unknown Unknown Somatic Phase_IV Capture Unknown . . SOLID Baylor Missense_Mutation SNP 40521625 40521625 ZFP106 15 T T C 52 ZFP36L1 677 hgsc.bcm.edu 36 14 68329376 68329376 + Silent SNP G G A novel Unknown TCGA-25-1317-01 TCGA-25-1317-10 G G . . . . Unknown Unknown Somatic Phase_IV Capture Unknown . . SOLID Baylor Silent SNP 68329376 68329376 ZFP36L1 14 G G A 37 ZMYND8 23613 hgsc.bcm.edu 36 20 45338490 45338490 + Silent SNP G G A novel Unknown TCGA-25-1317-01 TCGA-25-1317-10 G G . . . . Unknown Unknown Somatic Phase_IV Capture Unknown . . SOLID Baylor Silent SNP 45338490 45338490 ZMYND8 20 G G A 47 ZNF571 51276 hgsc.bcm.edu 36 19 42747734 42747734 + Missense_Mutation SNP C C T novel Unknown TCGA-25-1317-01 TCGA-25-1317-10 C C . . . . Unknown Unknown Somatic Phase_IV Capture Unknown . . SOLID Baylor Missense_Mutation SNP 42747734 42747734 ZNF571 19 C C T 17