Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer dataset type classification start end gene chr ref_allele tum_allele1 tum_allele2 context ARHGEF10L 55160 broad.mit.edu 36 1 17886718 17886718 + Missense_Mutation SNP G G A novel Unknown TCGA-25-1321-01 TCGA-25-1321-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 17886718 17886718 ARHGEF10L 1 G G A 39 ZNF648 127665 broad.mit.edu 36 1 180293674 180293674 + Missense_Mutation SNP T T C novel Unknown TCGA-25-1321-01 TCGA-25-1321-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 180293674 180293674 ZNF648 1 T T C 60 ASB13 79754 broad.mit.edu 36 10 5723803 5723803 + Silent SNP C C A novel Unknown TCGA-25-1321-01 TCGA-25-1321-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 5723803 5723803 ASB13 10 C C A 30 TCERG1L 256536 broad.mit.edu 36 10 132996519 132996519 + Silent SNP C C T novel Unknown TCGA-25-1321-01 TCGA-25-1321-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 132996519 132996519 TCERG1L 10 C C T 23 B4GALNT4 338707 broad.mit.edu 36 11 366331 366331 + Missense_Mutation SNP T T A novel Unknown TCGA-25-1321-01 TCGA-25-1321-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 366331 366331 B4GALNT4 11 T T A 62 OR10A4 283297 broad.mit.edu 36 11 6854698 6854698 + Missense_Mutation SNP A A T novel Unknown TCGA-25-1321-01 TCGA-25-1321-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 6854698 6854698 OR10A4 11 A A T 12 OR4A15 81328 broad.mit.edu 36 11 54892040 54892040 + Missense_Mutation SNP C C A novel Unknown TCGA-25-1321-01 TCGA-25-1321-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 54892040 54892040 OR4A15 11 C C A 17 OR4S2 219431 broad.mit.edu 36 11 55175361 55175361 + Missense_Mutation SNP C C T novel Unknown TCGA-25-1321-01 TCGA-25-1321-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 55175361 55175361 OR4S2 11 C C T 23 TIRAP 114609 broad.mit.edu 36 11 125668158 125668158 + Missense_Mutation SNP G G A novel Unknown TCGA-25-1321-01 TCGA-25-1321-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 125668158 125668158 TIRAP 11 G G A 40 TRHDE 29953 broad.mit.edu 36 12 71179671 71179671 + Missense_Mutation SNP G G A novel Unknown TCGA-25-1321-01 TCGA-25-1321-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 71179671 71179671 TRHDE 12 G G A 38 LPAR6 10161 broad.mit.edu 36 13 47884114 47884114 + Silent SNP T T G novel Unknown TCGA-25-1321-01 TCGA-25-1321-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 47884114 47884114 LPAR6 13 T T G 59 TGM1 7051 broad.mit.edu 36 14 23793822 23793822 + Missense_Mutation SNP A A G novel Unknown TCGA-25-1321-01 TCGA-25-1321-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 23793822 23793822 TGM1 14 A A G 3 SPTB 6710 broad.mit.edu 36 14 64330975 64330975 + Silent SNP G G C novel Unknown TCGA-25-1321-01 TCGA-25-1321-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 64330975 64330975 SPTB 14 G G C 47 ZFYVE26 23503 broad.mit.edu 36 14 67334190 67334190 + Missense_Mutation SNP G G A novel Unknown TCGA-25-1321-01 TCGA-25-1321-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 67334190 67334190 ZFYVE26 14 G G A 40 SEMA4B 10509 broad.mit.edu 36 15 88561767 88561767 + Missense_Mutation SNP G G A novel Unknown TCGA-25-1321-01 TCGA-25-1321-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 88561767 88561767 SEMA4B 15 G G A 40 SYNM 23336 broad.mit.edu 36 15 97487291 97487291 + Silent SNP G G A novel Unknown TCGA-25-1321-01 TCGA-25-1321-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 97487291 97487291 SYNM 15 G G A 39 CNTNAP4 85445 broad.mit.edu 36 16 75126959 75126959 + Silent SNP A A G novel Unknown TCGA-25-1321-01 TCGA-25-1321-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 75126959 75126959 CNTNAP4 16 A A G 10 C17orf68 80169 broad.mit.edu 36 17 8080294 8080294 + Missense_Mutation SNP C C T novel Unknown TCGA-25-1321-01 TCGA-25-1321-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 8080294 8080294 C17orf68 17 C C T 27 CHMP1B 57132 broad.mit.edu 36 18 11841695 11841695 + Missense_Mutation SNP C C T novel Unknown TCGA-25-1321-01 TCGA-25-1321-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 11841695 11841695 CHMP1B 18 C C T 27 ZNF101 94039 broad.mit.edu 36 19 19652053 19652053 + Missense_Mutation SNP G G A novel Unknown TCGA-25-1321-01 TCGA-25-1321-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 19652053 19652053 ZNF101 19 G G A 39 CCT4 10575 broad.mit.edu 36 2 61952835 61952835 + Missense_Mutation SNP C C A novel Unknown TCGA-25-1321-01 TCGA-25-1321-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 61952835 61952835 CCT4 2 C C A 24 IL1RL1 9173 broad.mit.edu 36 2 102325147 102325147 + Missense_Mutation SNP G G A novel Unknown TCGA-25-1321-01 TCGA-25-1321-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 102325147 102325147 IL1RL1 2 G G A 39 MAP2 4133 broad.mit.edu 36 2 210267400 210267400 + Missense_Mutation SNP A A G novel Unknown TCGA-25-1321-01 TCGA-25-1321-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 210267400 210267400 MAP2 2 A A G 11 LIPI 149998 broad.mit.edu 36 21 14483549 14483549 + Missense_Mutation SNP A A G novel Unknown TCGA-25-1321-01 TCGA-25-1321-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 14483549 14483549 LIPI 21 A A G 4 STAG1 10274 broad.mit.edu 36 3 137805986 137805986 + Missense_Mutation SNP C C T novel Unknown TCGA-25-1321-01 TCGA-25-1321-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 137805986 137805986 STAG1 3 C C T 31 APOD 347 broad.mit.edu 36 3 196777212 196777212 + Missense_Mutation SNP G G T novel Unknown TCGA-25-1321-01 TCGA-25-1321-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 196777212 196777212 APOD 3 G G T 36 NAA15 80155 broad.mit.edu 36 4 140500442 140500442 + Nonsense_Mutation SNP C C G novel Unknown TCGA-25-1321-01 TCGA-25-1321-10 Unknown Unknown Unknown x x --- x Broad Nonsense_Mutation SNP 140500442 140500442 NAA15 4 C C G 17 TBC1D9 23158 broad.mit.edu 36 4 141774620 141774620 + Missense_Mutation SNP C C T novel Unknown TCGA-25-1321-01 TCGA-25-1321-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 141774620 141774620 TBC1D9 4 C C T 27 ADAMTS16 170690 broad.mit.edu 36 5 5371299 5371299 + Missense_Mutation SNP C C T novel Unknown TCGA-25-1321-01 TCGA-25-1321-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 5371299 5371299 ADAMTS16 5 C C T 28 MEF2C 4208 broad.mit.edu 36 5 88063386 88063386 + Silent SNP G G T novel Unknown TCGA-25-1321-01 TCGA-25-1321-10 G T G G Unknown Valid Somatic x x Sequenom_PCR_WGA x Broad Silent SNP 88063386 88063386 MEF2C 5 G G T 43 FAM81B 153643 broad.mit.edu 36 5 94811667 94811667 + Missense_Mutation SNP G G A novel Unknown TCGA-25-1321-01 TCGA-25-1321-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 94811667 94811667 FAM81B 5 G G A 47 PCDHB5 26167 broad.mit.edu 36 5 140495855 140495855 + Missense_Mutation SNP G G C novel Unknown TCGA-25-1321-01 TCGA-25-1321-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 140495855 140495855 PCDHB5 5 G G C 42 AIM1 202 broad.mit.edu 36 6 107074569 107074569 + Missense_Mutation SNP A A C novel Unknown TCGA-25-1321-01 TCGA-25-1321-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 107074569 107074569 AIM1 6 A A C 1 PPP1R3A 5506 broad.mit.edu 36 7 113309380 113309380 + Missense_Mutation SNP C C A novel Unknown TCGA-25-1321-01 TCGA-25-1321-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 113309380 113309380 PPP1R3A 7 C C A 32 LPL 4023 broad.mit.edu 36 8 19856136 19856136 + Missense_Mutation SNP G G C novel Unknown TCGA-25-1321-01 TCGA-25-1321-10 G C G G Unknown Valid Somatic x x Sequenom_PCR_WGA x Broad Missense_Mutation SNP 19856136 19856136 LPL 8 G G C 41 ZFAND1 79752 broad.mit.edu 36 8 82788800 82788800 + Nonsense_Mutation SNP G G A novel Unknown TCGA-25-1321-01 TCGA-25-1321-10 Unknown Unknown Unknown x x --- x Broad Nonsense_Mutation SNP 82788800 82788800 ZFAND1 8 G G A 40 TOPORS 10210 broad.mit.edu 36 9 32532101 32532101 + Nonsense_Mutation SNP C C A novel Unknown TCGA-25-1321-01 TCGA-25-1321-10 C A C C Unknown Valid Somatic x x Sequenom_PCR_WGA x Broad Nonsense_Mutation SNP 32532101 32532101 TOPORS 9 C C A 31 TCEAL6 158931 broad.mit.edu 36 X 101282848 101282848 + Missense_Mutation SNP C C T novel Unknown TCGA-25-1321-01 TCGA-25-1321-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 101282848 101282848 TCEAL6 23 C C T 27 KIAA1210 57481 broad.mit.edu 36 X 118105348 118105348 + Silent SNP C C T novel Unknown TCGA-25-1321-01 TCGA-25-1321-10 C T C C Unknown Valid Somatic x x Sequenom_PCR_WGA x Broad Silent SNP 118105348 118105348 KIAA1210 23 C C T 28 TP53 7157 broad.mit.edu 36 17 7517846 7517846 + Missense_Mutation SNP G G A novel Unknown TCGA-25-1321-01 TCGA-25-1321-10 Unknown Unknown Unknown Phase_I Capture --- Illumina GAIIx Broad Missense_Mutation SNP 7517846 7517846 TP53 17 G G A 38 SFRP5 6425 broad.mit.edu 36 10 99517249 99517275 + Nonstop_Mutation DEL GAGGAGTGCCCTTCAGTGGGGCTCTGC - GAGGAGTGCCCTTCAGTGGGGCTCTGC novel Unknown TCGA-25-1321-01 TCGA-25-1321-10 Unknown Unknown Unknown Phase_I Capture --- Illumina GAIIx Broad Nonstop_Mutation DEL 99517249 99517275 SFRP5 10 GAGGAGTGCCCTTCAGTGGGGCTCTGC - GAGGAGTGCCCTTCAGTGGGGCTCTGC 41 RAB11FIP1 80223 broad.mit.edu 36 8 37876007 37876008 + Frame_Shift_Ins INS - C - novel Unknown TCGA-25-1321-01 TCGA-25-1321-10 Unknown Unknown Unknown Phase_I Capture --- Illumina GAIIx Broad Frame_Shift_Ins INS 37876007 37876008 RAB11FIP1 8 - C - 46