Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	dataset	type	classification	start	end	gene	chr	ref_allele	tum_allele1	tum_allele2	context
ATP8B3	148229	hgsc.bcm.edu	36	19	1734118	1734118	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-25-1324-01	TCGA-25-1324-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	1734118	1734118	ATP8B3	19	C	C	A	23
ATP8B4	79895	hgsc.bcm.edu	36	15	48010714	48010714	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-25-1324-01	TCGA-25-1324-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	48010714	48010714	ATP8B4	15	G	G	A	43
BIRC6	57448	hgsc.bcm.edu	36	2	32546564	32546564	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-1324-01	TCGA-25-1324-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA	.	.	SOLID	Baylor	Nonsense_Mutation	SNP	32546564	32546564	BIRC6	2	G	G	A	43
C7orf53	286006	hgsc.bcm.edu	36	7	111914312	111914312	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-1324-01	TCGA-25-1324-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	111914312	111914312	C7orf53	7	G	G	A	42
C9orf96	169436	hgsc.bcm.edu	36	9	135255456	135255456	+	Frame_Shift_Del	DEL	G	G	-	novel	Unknown	TCGA-25-1324-01	TCGA-25-1324-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Frame_Shift_Del	DEL	135255456	135255456	C9orf96	9	G	G	-	46
CAD	790	hgsc.bcm.edu	36	2	27312788	27312788	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-1324-01	TCGA-25-1324-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	27312788	27312788	CAD	2	C	C	T	23
DPP4	1803	hgsc.bcm.edu	36	2	162560109	162560109	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-25-1324-01	TCGA-25-1324-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	162560109	162560109	DPP4	2	C	C	A	32
EBF4	57593	hgsc.bcm.edu	36	20	2634893	2634893	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-1324-01	TCGA-25-1324-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	2634893	2634893	EBF4	20	G	G	A	37
FAAH	2166	hgsc.bcm.edu	36	1	46644311	46644311	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-25-1324-01	TCGA-25-1324-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	46644311	46644311	FAAH	1	A	A	T	3
GABRA6	2559	hgsc.bcm.edu	36	5	161061315	161061315	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-25-1324-01	TCGA-25-1324-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	161061315	161061315	GABRA6	5	T	T	C	50
GK2	2712	hgsc.bcm.edu	36	4	80547003	80547003	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-25-1324-01	TCGA-25-1324-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	80547003	80547003	GK2	4	G	G	T	34
GPR162	27239	hgsc.bcm.edu	36	12	6804977	6804977	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-1324-01	TCGA-25-1324-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	6804977	6804977	GPR162	12	G	G	A	46
GPR50	9248	hgsc.bcm.edu	36	X	150100216	150100227	+	In_Frame_Del	DEL	CACCACTGGCCA	CACCACTGGCCA	-	novel	Unknown	TCGA-25-1324-01	TCGA-25-1324-10	CACCACTGGCCA	CACCACTGGCCA	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	In_Frame_Del	DEL	150100216	150100227	GPR50	23	CACCACTGGCCA	CACCACTGGCCA	-	21
GREB1	9687	hgsc.bcm.edu	36	2	11695321	11695321	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-1324-01	TCGA-25-1324-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	11695321	11695321	GREB1	2	C	C	T	23
GRTP1	79774	hgsc.bcm.edu	36	13	113057664	113057664	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-25-1324-01	TCGA-25-1324-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	113057664	113057664	GRTP1	13	G	G	A	47
KCNA5	3741	hgsc.bcm.edu	36	12	5024994	5024995	+	Frame_Shift_Del	DEL	GC	GC	-	novel	Unknown	TCGA-25-1324-01	TCGA-25-1324-10	GC	GC	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Frame_Shift_Del	DEL	5024994	5024995	KCNA5	12	GC	GC	-	42
KIAA1529	57653	hgsc.bcm.edu	36	9	99111666	99111666	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-25-1324-01	TCGA-25-1324-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	99111666	99111666	KIAA1529	9	C	C	A	26
KIR2DL4	3805	hgsc.bcm.edu	36	19	60006956	60006956	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-25-1324-01	TCGA-25-1324-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	60006956	60006956	KIR2DL4	19	T	T	A	56
KIR3DL3	115653	hgsc.bcm.edu	36	19	59931054	59931054	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-1324-01	TCGA-25-1324-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	59931054	59931054	KIR3DL3	19	C	C	T	27
KNTC1	9735	hgsc.bcm.edu	36	12	121623725	121623726	+	Frame_Shift_Del	DEL	AA	AA	-	novel	Unknown	TCGA-25-1324-01	TCGA-25-1324-10	AA	AA	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Frame_Shift_Del	DEL	121623725	121623726	KNTC1	12	AA	AA	-	13
MFSD11	79157	hgsc.bcm.edu	36	17	72275062	72275062	+	Splice_Site_SNP	SNP	G	G	C	novel	Unknown	TCGA-25-1324-01	TCGA-25-1324-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Splice_Site_SNP	SNP	72275062	72275062	MFSD11	17	G	G	C	33
MGA	23269	hgsc.bcm.edu	36	15	39839925	39839925	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-1324-01	TCGA-25-1324-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA	.	.	SOLID	Baylor	Missense_Mutation	SNP	39839925	39839925	MGA	15	G	G	A	39
MORC3	23515	hgsc.bcm.edu	36	21	36666647	36666647	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-1324-01	TCGA-25-1324-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	36666647	36666647	MORC3	21	G	G	A	48
MTMR3	8897	hgsc.bcm.edu	36	22	28746336	28746338	+	In_Frame_Del	DEL	GTC	GTC	-	novel	Unknown	TCGA-25-1324-01	TCGA-25-1324-10	GTC	GTC	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	In_Frame_Del	DEL	28746336	28746338	MTMR3	22	GTC	GTC	-	44
MTTP	4547	hgsc.bcm.edu	36	4	100759232	100759232	+	Nonsense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-25-1324-01	TCGA-25-1324-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Nonsense_Mutation	SNP	100759232	100759232	MTTP	4	G	G	T	41
MYH8	4626	hgsc.bcm.edu	36	17	10240755	10240755	+	Silent	SNP	T	T	A	novel	Unknown	TCGA-25-1324-01	TCGA-25-1324-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	10240755	10240755	MYH8	17	T	T	A	49
PCDH20	64881	hgsc.bcm.edu	36	13	60885447	60885447	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-25-1324-01	TCGA-25-1324-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	60885447	60885447	PCDH20	13	C	C	A	32
PDGFRB	5159	hgsc.bcm.edu	36	5	149492605	149492605	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-25-1324-01	TCGA-25-1324-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	149492605	149492605	PDGFRB	5	T	T	G	57
PLA2G4F	255189	hgsc.bcm.edu	36	15	40229603	40229603	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-25-1324-01	TCGA-25-1324-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	40229603	40229603	PLA2G4F	15	A	A	G	6
PROCR	10544	hgsc.bcm.edu	36	20	33228254	33228254	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-25-1324-01	TCGA-25-1324-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	33228254	33228254	PROCR	20	T	T	C	59
PTPRE	5791	hgsc.bcm.edu	36	10	129761617	129761617	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-25-1324-01	TCGA-25-1324-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	129761617	129761617	PTPRE	10	C	C	T	31
RELN	5649	hgsc.bcm.edu	36	7	102911424	102911424	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-1324-01	TCGA-25-1324-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA	.	.	SOLID	Baylor	Missense_Mutation	SNP	102911424	102911424	RELN	7	C	C	T	19
RILP	83547	hgsc.bcm.edu	36	17	1498504	1498504	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-25-1324-01	TCGA-25-1324-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	1498504	1498504	RILP	17	C	C	G	24
RP1L1	94137	hgsc.bcm.edu	36	8	10501886	10501886	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-25-1324-01	TCGA-25-1324-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	10501886	10501886	RP1L1	8	G	G	C	36
RPA1	6117	hgsc.bcm.edu	36	17	1733866	1733866	+	Frame_Shift_Del	DEL	G	G	-	novel	Unknown	TCGA-25-1324-01	TCGA-25-1324-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Frame_Shift_Del	DEL	1733866	1733866	RPA1	17	G	G	-	33
SERPINA6	866	hgsc.bcm.edu	36	14	93850271	93850271	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-25-1324-01	TCGA-25-1324-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	93850271	93850271	SERPINA6	14	C	C	G	21
SLC25A46	91137	hgsc.bcm.edu	36	5	110125059	110125059	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-25-1324-01	TCGA-25-1324-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	110125059	110125059	SLC25A46	5	C	C	A	28
SVIL	6840	hgsc.bcm.edu	36	10	29862378	29862378	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-25-1324-01	TCGA-25-1324-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	29862378	29862378	SVIL	10	T	T	G	64
TAF6	6878	hgsc.bcm.edu	36	7	99547550	99547550	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-25-1324-01	TCGA-25-1324-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	99547550	99547550	TAF6	7	C	C	A	25
TFCP2L1	29842	hgsc.bcm.edu	36	2	121755283	121755283	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-1324-01	TCGA-25-1324-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	121755283	121755283	TFCP2L1	2	C	C	T	30
TP53	7157	hgsc.bcm.edu	36	17	7519280	7519280	+	Splice_Site_SNP	SNP	C	C	T	novel	Unknown	TCGA-25-1324-01	TCGA-25-1324-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA	.	.	SOLID	Baylor	Splice_Site_SNP	SNP	7519280	7519280	TP53	17	C	C	T	20
UBE2M	9040	hgsc.bcm.edu	36	19	63759885	63759885	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-1324-01	TCGA-25-1324-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	63759885	63759885	UBE2M	19	C	C	T	19
WDR63	126820	hgsc.bcm.edu	36	1	85336824	85336824	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-25-1324-01	TCGA-25-1324-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	85336824	85336824	WDR63	1	G	G	C	33
ZBTB7C	201501	hgsc.bcm.edu	36	18	43821394	43821394	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-1324-01	TCGA-25-1324-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	43821394	43821394	ZBTB7C	18	C	C	T	23
ZC3H3	23144	hgsc.bcm.edu	36	8	144661192	144661192	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-1324-01	TCGA-25-1324-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	144661192	144661192	ZC3H3	8	G	G	A	38
ZC3H7B	23264	hgsc.bcm.edu	36	22	40065092	40065092	+	Nonsense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-25-1324-01	TCGA-25-1324-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Nonsense_Mutation	SNP	40065092	40065092	ZC3H7B	22	C	C	G	29
ZCWPW1	55063	hgsc.bcm.edu	36	7	99852628	99852628	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-25-1324-01	TCGA-25-1324-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA	.	.	SOLID	Baylor	Missense_Mutation	SNP	99852628	99852628	ZCWPW1	7	T	T	G	52
ZFHX4	79776	hgsc.bcm.edu	36	8	77780767	77780767	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-25-1324-01	TCGA-25-1324-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	77780767	77780767	ZFHX4	8	G	G	T	44
ZNF295	49854	hgsc.bcm.edu	36	21	42284620	42284620	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-25-1324-01	TCGA-25-1324-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	42284620	42284620	ZNF295	21	T	T	G	54