Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	dataset	type	classification	start	end	gene	chr	ref_allele	tum_allele1	tum_allele2	context
NPHP4	261734	broad.mit.edu	36	1	5859763	5859763	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-1326-01	TCGA-25-1326-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	5859763	5859763	NPHP4	1	C	C	T	22
EPB41	2035	broad.mit.edu	36	1	29264184	29264184	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-25-1326-01	TCGA-25-1326-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	29264184	29264184	EPB41	1	G	G	C	47
NKAIN1	79570	broad.mit.edu	36	1	31427293	31427293	+	Splice_Site_SNP	SNP	C	C	G	novel	Unknown	TCGA-25-1326-01	TCGA-25-1326-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Splice_Site_SNP	SNP	31427293	31427293	NKAIN1	1	C	C	G	19
PCSK9	255738	broad.mit.edu	36	1	55284884	55284884	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-25-1326-01	TCGA-25-1326-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	55284884	55284884	PCSK9	1	G	G	T	39
MAGI3	260425	broad.mit.edu	36	1	113993436	113993436	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-25-1326-01	TCGA-25-1326-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	113993436	113993436	MAGI3	1	G	G	C	42
CHD1L	9557	broad.mit.edu	36	1	145218467	145218467	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-25-1326-01	TCGA-25-1326-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	145218467	145218467	CHD1L	1	A	A	T	11
SV2A	9900	broad.mit.edu	36	1	148147672	148147672	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-1326-01	TCGA-25-1326-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	148147672	148147672	SV2A	1	G	G	A	38
CGN	57530	broad.mit.edu	36	1	149763795	149763795	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-25-1326-01	TCGA-25-1326-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	149763795	149763795	CGN	1	C	C	A	20
ASH1L	55870	broad.mit.edu	36	1	153715605	153715605	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-25-1326-01	TCGA-25-1326-10			A	G	A	A	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	Broad	Missense_Mutation	SNP	153715605	153715605	ASH1L	1	A	A	G	1
DAP3	7818	broad.mit.edu	36	1	153965498	153965498	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-25-1326-01	TCGA-25-1326-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	153965498	153965498	DAP3	1	C	C	T	25
SLC25A44	9673	broad.mit.edu	36	1	154446693	154446693	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-25-1326-01	TCGA-25-1326-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	154446693	154446693	SLC25A44	1	G	G	C	34
LGR6	59352	broad.mit.edu	36	1	200550592	200550592	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-25-1326-01	TCGA-25-1326-10			A	G	A	A	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	Broad	Missense_Mutation	SNP	200550592	200550592	LGR6	1	A	A	G	10
LGTN	1939	broad.mit.edu	36	1	204839560	204839560	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-25-1326-01	TCGA-25-1326-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	204839560	204839560	LGTN	1	G	G	T	41
MARK1	4139	broad.mit.edu	36	1	218875427	218875427	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-25-1326-01	TCGA-25-1326-10			C	G	C	C	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	Broad	Silent	SNP	218875427	218875427	MARK1	1	C	C	G	22
GALNT2	2590	broad.mit.edu	36	1	228405525	228405525	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-25-1326-01	TCGA-25-1326-10			C	T	C	C	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	Broad	Silent	SNP	228405525	228405525	GALNT2	1	C	C	T	20
SLC35F3	148641	broad.mit.edu	36	1	232518986	232518986	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-25-1326-01	TCGA-25-1326-10			C	A	C	C	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	Broad	Missense_Mutation	SNP	232518986	232518986	SLC35F3	1	C	C	A	24
GATA3	2625	broad.mit.edu	36	10	8140628	8140628	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-1326-01	TCGA-25-1326-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	8140628	8140628	GATA3	10	C	C	T	30
EPC1	80314	broad.mit.edu	36	10	32600731	32600731	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-25-1326-01	TCGA-25-1326-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	32600731	32600731	EPC1	10	T	T	G	59
ARHGAP22	58504	broad.mit.edu	36	10	49324538	49324538	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-25-1326-01	TCGA-25-1326-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	49324538	49324538	ARHGAP22	10	C	C	G	30
ADK	132	broad.mit.edu	36	10	75654357	75654357	+	Splice_Site_SNP	SNP	T	T	G	novel	Unknown	TCGA-25-1326-01	TCGA-25-1326-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Splice_Site_SNP	SNP	75654357	75654357	ADK	10	T	T	G	57
SORCS3	22986	broad.mit.edu	36	10	106665682	106665682	+	Splice_Site_SNP	SNP	T	T	C	novel	Unknown	TCGA-25-1326-01	TCGA-25-1326-10			T	C	T	T	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	Broad	Splice_Site_SNP	SNP	106665682	106665682	SORCS3	10	T	T	C	57
NR1H3	10062	broad.mit.edu	36	11	47239545	47239545	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-1326-01	TCGA-25-1326-10			G	A	G	G	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	Broad	Missense_Mutation	SNP	47239545	47239545	NR1H3	11	G	G	A	39
PLAC1L	219990	broad.mit.edu	36	11	59571087	59571087	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-25-1326-01	TCGA-25-1326-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	59571087	59571087	PLAC1L	11	T	T	A	60
OR8D1	283159	broad.mit.edu	36	11	123685294	123685294	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-25-1326-01	TCGA-25-1326-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	123685294	123685294	OR8D1	11	G	G	C	44
PHC1	1911	broad.mit.edu	36	12	8974644	8974644	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-1326-01	TCGA-25-1326-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	8974644	8974644	PHC1	12	C	C	T	17
ABCC9	10060	broad.mit.edu	36	12	21903817	21903817	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-25-1326-01	TCGA-25-1326-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	21903817	21903817	ABCC9	12	C	C	T	27
LRRK2	120892	broad.mit.edu	36	12	39002201	39002201	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-25-1326-01	TCGA-25-1326-10			C	A	C	C	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	Broad	Missense_Mutation	SNP	39002201	39002201	LRRK2	12	C	C	A	17
HOXC6	3223	broad.mit.edu	36	12	52708799	52708799	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-25-1326-01	TCGA-25-1326-10			C	A	C	C	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	Broad	Missense_Mutation	SNP	52708799	52708799	HOXC6	12	C	C	A	30
ESYT1	23344	broad.mit.edu	36	12	54817624	54817624	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-25-1326-01	TCGA-25-1326-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	54817624	54817624	ESYT1	12	G	G	A	35
NAV3	89795	broad.mit.edu	36	12	77040179	77040179	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-25-1326-01	TCGA-25-1326-10			A	T	A	A	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	Broad	Missense_Mutation	SNP	77040179	77040179	NAV3	12	A	A	T	14
ELK3	2004	broad.mit.edu	36	12	95164977	95164977	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-25-1326-01	TCGA-25-1326-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	95164977	95164977	ELK3	12	C	C	T	25
CDK17	5128	broad.mit.edu	36	12	95207165	95207165	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-25-1326-01	TCGA-25-1326-10			C	G	C	C	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	Broad	Missense_Mutation	SNP	95207165	95207165	CDK17	12	C	C	G	32
SBNO1	55206	broad.mit.edu	36	12	122361599	122361599	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-25-1326-01	TCGA-25-1326-10			A	G	A	A	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	Broad	Missense_Mutation	SNP	122361599	122361599	SBNO1	12	A	A	G	7
CENPJ	55835	broad.mit.edu	36	13	24384797	24384797	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-25-1326-01	TCGA-25-1326-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	24384797	24384797	CENPJ	13	T	T	A	64
C13orf23	80209	broad.mit.edu	36	13	38498450	38498450	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-25-1326-01	TCGA-25-1326-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	38498450	38498450	C13orf23	13	G	G	C	47
STK24	8428	broad.mit.edu	36	13	97913946	97913946	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-25-1326-01	TCGA-25-1326-10			G	C	G	G	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	Broad	Missense_Mutation	SNP	97913946	97913946	STK24	13	G	G	C	38
MDGA2	161357	broad.mit.edu	36	14	46412452	46412452	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-25-1326-01	TCGA-25-1326-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	46412452	46412452	MDGA2	14	G	G	T	43
SYNE2	23224	broad.mit.edu	36	14	63612455	63612455	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-25-1326-01	TCGA-25-1326-10			G	C	G	G	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	Broad	Missense_Mutation	SNP	63612455	63612455	SYNE2	14	G	G	C	45
CCNDBP1	23582	broad.mit.edu	36	15	41265350	41265350	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-25-1326-01	TCGA-25-1326-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	41265350	41265350	CCNDBP1	15	G	G	A	33
FBN1	2200	broad.mit.edu	36	15	46605669	46605669	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-25-1326-01	TCGA-25-1326-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	46605669	46605669	FBN1	15	C	C	G	25
MYO5C	55930	broad.mit.edu	36	15	50304578	50304578	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-25-1326-01	TCGA-25-1326-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	50304578	50304578	MYO5C	15	T	T	G	56
ARIH1	25820	broad.mit.edu	36	15	70634759	70634759	+	Splice_Site_SNP	SNP	G	G	A	novel	Unknown	TCGA-25-1326-01	TCGA-25-1326-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Splice_Site_SNP	SNP	70634759	70634759	ARIH1	15	G	G	A	44
CD276	80381	broad.mit.edu	36	15	71782444	71782444	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-25-1326-01	TCGA-25-1326-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	71782444	71782444	CD276	15	A	A	G	7
ZNF710	374655	broad.mit.edu	36	15	88418450	88418450	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-25-1326-01	TCGA-25-1326-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	88418450	88418450	ZNF710	15	G	G	T	36
SRCAP	10847	broad.mit.edu	36	16	30639136	30639136	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-25-1326-01	TCGA-25-1326-10			C	G	C	C	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	Broad	Silent	SNP	30639136	30639136	SRCAP	16	C	C	G	29
NLRC5	84166	broad.mit.edu	36	16	55669187	55669187	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-25-1326-01	TCGA-25-1326-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	55669187	55669187	NLRC5	16	G	G	T	40
AARS	16	broad.mit.edu	36	16	68844146	68844146	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-25-1326-01	TCGA-25-1326-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	68844146	68844146	AARS	16	G	G	C	42
ZNF232	7775	broad.mit.edu	36	17	4950517	4950517	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-25-1326-01	TCGA-25-1326-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Nonsense_Mutation	SNP	4950517	4950517	ZNF232	17	C	C	A	32
C17orf87	388325	broad.mit.edu	36	17	5054892	5054892	+	Silent	SNP	T	T	G	novel	Unknown	TCGA-25-1326-01	TCGA-25-1326-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	5054892	5054892	C17orf87	17	T	T	G	63
TP53	7157	broad.mit.edu	36	17	7517807	7517807	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-1326-01	TCGA-25-1326-10			C	T	C	C	Unknown	Valid	Somatic	x	x	454_PCR_WGA			x	Broad	Missense_Mutation	SNP	7517807	7517807	TP53	17	C	C	T	30
C17orf63	55731	broad.mit.edu	36	17	24109750	24109750	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-25-1326-01	TCGA-25-1326-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	24109750	24109750	C17orf63	17	G	G	C	44
EVI2B	2124	broad.mit.edu	36	17	26656305	26656305	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-1326-01	TCGA-25-1326-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	26656305	26656305	EVI2B	17	G	G	A	45
KRT28	162605	broad.mit.edu	36	17	36203673	36203673	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-25-1326-01	TCGA-25-1326-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	36203673	36203673	KRT28	17	A	A	G	11
DNAJC7	7266	broad.mit.edu	36	17	37395049	37395049	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-25-1326-01	TCGA-25-1326-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	37395049	37395049	DNAJC7	17	G	G	C	33
CNTNAP1	8506	broad.mit.edu	36	17	38094471	38094471	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-25-1326-01	TCGA-25-1326-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	38094471	38094471	CNTNAP1	17	T	T	C	62
ABCA5	23461	broad.mit.edu	36	17	64778399	64778399	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-25-1326-01	TCGA-25-1326-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	64778399	64778399	ABCA5	17	G	G	T	45
TRIM47	91107	broad.mit.edu	36	17	71383647	71383647	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-25-1326-01	TCGA-25-1326-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	71383647	71383647	TRIM47	17	G	G	A	38
HGS	9146	broad.mit.edu	36	17	77272462	77272462	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-25-1326-01	TCGA-25-1326-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	77272462	77272462	HGS	17	A	A	T	7
MYOM1	8736	broad.mit.edu	36	18	3116832	3116832	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-1326-01	TCGA-25-1326-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	3116832	3116832	MYOM1	18	C	C	T	30
ST8SIA5	29906	broad.mit.edu	36	18	42522804	42522804	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-25-1326-01	TCGA-25-1326-10			G	T	G	G	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	Broad	Missense_Mutation	SNP	42522804	42522804	ST8SIA5	18	G	G	T	34
MALT1	10892	broad.mit.edu	36	18	54541318	54541318	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-25-1326-01	TCGA-25-1326-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	54541318	54541318	MALT1	18	C	C	T	29
GALR1	2587	broad.mit.edu	36	18	73109662	73109662	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-25-1326-01	TCGA-25-1326-10			A	G	A	A	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	Broad	Missense_Mutation	SNP	73109662	73109662	GALR1	18	A	A	G	6
ADNP2	22850	broad.mit.edu	36	18	75997592	75997592	+	Missense_Mutation	SNP	T	T	C	rs11553022	byHapMap	TCGA-25-1326-01	TCGA-25-1326-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	75997592	75997592	ADNP2	18	T	T	C	49
S1PR5	53637	broad.mit.edu	36	19	10485568	10485568	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-1326-01	TCGA-25-1326-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	10485568	10485568	S1PR5	19	C	C	T	30
TSPAN16	26526	broad.mit.edu	36	19	11269889	11269889	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-25-1326-01	TCGA-25-1326-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	11269889	11269889	TSPAN16	19	C	C	T	31
BEST2	54831	broad.mit.edu	36	19	12727268	12727268	+	Nonsense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-1326-01	TCGA-25-1326-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Nonsense_Mutation	SNP	12727268	12727268	BEST2	19	C	C	T	25
ZNF14	7561	broad.mit.edu	36	19	19685901	19685901	+	Silent	SNP	T	T	G	novel	Unknown	TCGA-25-1326-01	TCGA-25-1326-10			T	G	T	T	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	Broad	Silent	SNP	19685901	19685901	ZNF14	19	T	T	G	56
PRKD2	25865	broad.mit.edu	36	19	51876831	51876831	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-25-1326-01	TCGA-25-1326-10			C	G	C	C	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	Broad	Missense_Mutation	SNP	51876831	51876831	PRKD2	19	C	C	G	29
DHX34	9704	broad.mit.edu	36	19	52548574	52548574	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-25-1326-01	TCGA-25-1326-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	52548574	52548574	DHX34	19	T	T	G	63
PTPRH	5794	broad.mit.edu	36	19	60408738	60408738	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-25-1326-01	TCGA-25-1326-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	60408738	60408738	PTPRH	19	A	A	G	11
TPO	7173	broad.mit.edu	36	2	1397218	1397218	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-25-1326-01	TCGA-25-1326-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	1397218	1397218	TPO	2	C	C	G	28
EMILIN1	11117	broad.mit.edu	36	2	27160227	27160227	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-25-1326-01	TCGA-25-1326-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	27160227	27160227	EMILIN1	2	C	C	A	28
SLC5A7	60482	broad.mit.edu	36	2	107993138	107993138	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-1326-01	TCGA-25-1326-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	107993138	107993138	SLC5A7	2	G	G	A	40
YSK4	80122	broad.mit.edu	36	2	135455238	135455238	+	Nonsense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-25-1326-01	TCGA-25-1326-10			A	T	A	A	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	Broad	Nonsense_Mutation	SNP	135455238	135455238	YSK4	2	A	A	T	6
NEB	4703	broad.mit.edu	36	2	152207370	152207370	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-25-1326-01	TCGA-25-1326-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	152207370	152207370	NEB	2	G	G	T	45
TTN	7273	broad.mit.edu	36	2	179137488	179137488	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-25-1326-01	TCGA-25-1326-10			A	G	A	A	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	Broad	Missense_Mutation	SNP	179137488	179137488	TTN	2	A	A	G	4
NCKAP1	10787	broad.mit.edu	36	2	183498760	183498760	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-25-1326-01	TCGA-25-1326-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	183498760	183498760	NCKAP1	2	T	T	C	50
HECW2	57520	broad.mit.edu	36	2	196892764	196892764	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-25-1326-01	TCGA-25-1326-10			C	G	C	C	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	Broad	Missense_Mutation	SNP	196892764	196892764	HECW2	2	C	C	G	24
ACCN4	55515	broad.mit.edu	36	2	220111012	220111012	+	Nonstop_Mutation	SNP	G	G	T	novel	Unknown	TCGA-25-1326-01	TCGA-25-1326-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Nonstop_Mutation	SNP	220111012	220111012	ACCN4	2	G	G	T	35
CAPN10	11132	broad.mit.edu	36	2	241177488	241177488	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-25-1326-01	TCGA-25-1326-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	241177488	241177488	CAPN10	2	A	A	C	3
FARP2	9855	broad.mit.edu	36	2	242051477	242051477	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-25-1326-01	TCGA-25-1326-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	242051477	242051477	FARP2	2	C	C	T	28
PLCB4	5332	broad.mit.edu	36	20	9388287	9388287	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-25-1326-01	TCGA-25-1326-10			A	G	A	A	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	Broad	Silent	SNP	9388287	9388287	PLCB4	20	A	A	G	3
SPAG4	6676	broad.mit.edu	36	20	33668553	33668553	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-25-1326-01	TCGA-25-1326-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	33668553	33668553	SPAG4	20	C	C	G	23
KIAA1755	85449	broad.mit.edu	36	20	36303610	36303610	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-1326-01	TCGA-25-1326-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	36303610	36303610	KIAA1755	20	C	C	T	30
GNAS	2778	broad.mit.edu	36	20	56918234	56918234	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-25-1326-01	TCGA-25-1326-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	56918234	56918234	GNAS	20	C	C	G	29
PIWIL3	440822	broad.mit.edu	36	22	23445513	23445513	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-25-1326-01	TCGA-25-1326-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	23445513	23445513	PIWIL3	22	G	G	C	34
LIMK2	3985	broad.mit.edu	36	22	29992052	29992052	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-25-1326-01	TCGA-25-1326-10			C	G	C	C	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	Broad	Missense_Mutation	SNP	29992052	29992052	LIMK2	22	C	C	G	32
MKL1	57591	broad.mit.edu	36	22	39157379	39157379	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-25-1326-01	TCGA-25-1326-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	39157379	39157379	MKL1	22	G	G	C	34
C3orf45	132228	broad.mit.edu	36	3	50299592	50299592	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-25-1326-01	TCGA-25-1326-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	50299592	50299592	C3orf45	3	C	C	G	26
PTPRG	5793	broad.mit.edu	36	3	62164218	62164218	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-1326-01	TCGA-25-1326-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	62164218	62164218	PTPRG	3	C	C	T	21
C3orf64	285203	broad.mit.edu	36	3	69140344	69140344	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-1326-01	TCGA-25-1326-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	69140344	69140344	C3orf64	3	C	C	T	25
GPR27	2850	broad.mit.edu	36	3	71886766	71886766	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-25-1326-01	TCGA-25-1326-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	71886766	71886766	GPR27	3	C	C	T	32
CLDND1	56650	broad.mit.edu	36	3	99718361	99718361	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-25-1326-01	TCGA-25-1326-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	99718361	99718361	CLDND1	3	G	G	C	41
FAM194A	131831	broad.mit.edu	36	3	151860491	151860491	+	Nonsense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-25-1326-01	TCGA-25-1326-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Nonsense_Mutation	SNP	151860491	151860491	FAM194A	3	T	T	A	64
SPATA16	83893	broad.mit.edu	36	3	174249497	174249497	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-25-1326-01	TCGA-25-1326-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	174249497	174249497	SPATA16	3	T	T	C	58
KNG1	3827	broad.mit.edu	36	3	187942128	187942128	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-1326-01	TCGA-25-1326-10			C	T	C	C	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	Broad	Missense_Mutation	SNP	187942128	187942128	KNG1	3	C	C	T	27
DLG1	1739	broad.mit.edu	36	3	198327346	198327346	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-25-1326-01	TCGA-25-1326-10			G	C	G	G	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	Broad	Missense_Mutation	SNP	198327346	198327346	DLG1	3	G	G	C	35
CD38	952	broad.mit.edu	36	4	15427354	15427354	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-25-1326-01	TCGA-25-1326-10			G	C	G	G	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	Broad	Missense_Mutation	SNP	15427354	15427354	CD38	4	G	G	C	46
DCUN1D4	23142	broad.mit.edu	36	4	52435203	52435203	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-25-1326-01	TCGA-25-1326-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	52435203	52435203	DCUN1D4	4	G	G	C	39
CEP72	55722	broad.mit.edu	36	5	692308	692308	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-25-1326-01	TCGA-25-1326-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Nonsense_Mutation	SNP	692308	692308	CEP72	5	C	C	A	25
DDX4	54514	broad.mit.edu	36	5	55070580	55070580	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-25-1326-01	TCGA-25-1326-10			A	C	A	A	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	Broad	Missense_Mutation	SNP	55070580	55070580	DDX4	5	A	A	C	2
FNIP1	96459	broad.mit.edu	36	5	131160476	131160476	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-1326-01	TCGA-25-1326-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	131160476	131160476	FNIP1	5	C	C	T	24
PCDHA9	9752	broad.mit.edu	36	5	140208677	140208677	+	Missense_Mutation	SNP	A	A	G	rs364101	byCluster;byFrequency;bySubmitter;byHapMap	TCGA-25-1326-01	TCGA-25-1326-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	140208677	140208677	PCDHA9	5	A	A	G	3
KCNMB1	3779	broad.mit.edu	36	5	169744940	169744940	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-25-1326-01	TCGA-25-1326-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	169744940	169744940	KCNMB1	5	G	G	C	35
JARID2	3720	broad.mit.edu	36	6	15620422	15620422	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-25-1326-01	TCGA-25-1326-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	15620422	15620422	JARID2	6	C	C	A	30
HIST1H1A	3024	broad.mit.edu	36	6	26125435	26125435	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-25-1326-01	TCGA-25-1326-10			G	C	G	G	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	Broad	Missense_Mutation	SNP	26125435	26125435	HIST1H1A	6	G	G	C	41
HIST1H1E	3008	broad.mit.edu	36	6	26265248	26265248	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-25-1326-01	TCGA-25-1326-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	26265248	26265248	HIST1H1E	6	G	G	A	33
UHRF1BP1	54887	broad.mit.edu	36	6	34934094	34934094	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-25-1326-01	TCGA-25-1326-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	34934094	34934094	UHRF1BP1	6	G	G	C	46
PTCRA	171558	broad.mit.edu	36	6	42998839	42998839	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-25-1326-01	TCGA-25-1326-10			T	A	T	T	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	Broad	Missense_Mutation	SNP	42998839	42998839	PTCRA	6	T	T	A	60
CAPN11	11131	broad.mit.edu	36	6	44253067	44253067	+	Nonsense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-1326-01	TCGA-25-1326-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Nonsense_Mutation	SNP	44253067	44253067	CAPN11	6	C	C	T	25
TTK	7272	broad.mit.edu	36	6	80801839	80801839	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-25-1326-01	TCGA-25-1326-10			C	G	C	C	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	Broad	Missense_Mutation	SNP	80801839	80801839	TTK	6	C	C	G	17
DOPEY1	23033	broad.mit.edu	36	6	83904483	83904483	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-25-1326-01	TCGA-25-1326-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	83904483	83904483	DOPEY1	6	T	T	C	57
FRK	2444	broad.mit.edu	36	6	116431764	116431764	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-25-1326-01	TCGA-25-1326-10			A	T	A	A	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	Broad	Missense_Mutation	SNP	116431764	116431764	FRK	6	A	A	T	6
THEMIS	387357	broad.mit.edu	36	6	128192473	128192473	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-25-1326-01	TCGA-25-1326-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	128192473	128192473	THEMIS	6	G	G	C	33
ARG1	383	broad.mit.edu	36	6	131939508	131939508	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-25-1326-01	TCGA-25-1326-10			G	T	G	G	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	Broad	Missense_Mutation	SNP	131939508	131939508	ARG1	6	G	G	T	44
TAAR6	319100	broad.mit.edu	36	6	132933337	132933337	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-25-1326-01	TCGA-25-1326-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	132933337	132933337	TAAR6	6	C	C	A	25
FNDC1	84624	broad.mit.edu	36	6	159574023	159574023	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-25-1326-01	TCGA-25-1326-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	159574023	159574023	FNDC1	6	G	G	T	35
TNRC18B	84629	broad.mit.edu	36	7	5376660	5376660	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-25-1326-01	TCGA-25-1326-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	5376660	5376660	TNRC18B	7	C	C	G	30
PTCD1	26024	broad.mit.edu	36	7	98859514	98859514	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-25-1326-01	TCGA-25-1326-10			C	T	C	C	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	Broad	Silent	SNP	98859514	98859514	PTCD1	7	C	C	T	20
ZKSCAN5	23660	broad.mit.edu	36	7	98961610	98961610	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-25-1326-01	TCGA-25-1326-10			G	C	G	G	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	Broad	Missense_Mutation	SNP	98961610	98961610	ZKSCAN5	7	G	G	C	34
MUC17	140453	broad.mit.edu	36	7	100467963	100467963	+	Silent	SNP	A	A	T	novel	Unknown	TCGA-25-1326-01	TCGA-25-1326-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	100467963	100467963	MUC17	7	A	A	T	5
SRPK2	6733	broad.mit.edu	36	7	104595103	104595103	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-25-1326-01	TCGA-25-1326-10			G	A	G	G	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	Broad	Silent	SNP	104595103	104595103	SRPK2	7	G	G	A	41
ZNF746	155061	broad.mit.edu	36	7	148803306	148803306	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-25-1326-01	TCGA-25-1326-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	148803306	148803306	ZNF746	7	C	C	G	31
SSPO	23145	broad.mit.edu	36	7	149106036	149106036	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-25-1326-01	TCGA-25-1326-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	149106036	149106036	SSPO	7	G	G	A	47
VCPIP1	80124	broad.mit.edu	36	8	67740310	67740310	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-25-1326-01	TCGA-25-1326-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	67740310	67740310	VCPIP1	8	C	C	G	17
ARFGEF1	10565	broad.mit.edu	36	8	68301929	68301929	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-1326-01	TCGA-25-1326-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	68301929	68301929	ARFGEF1	8	C	C	T	17
FAM164A	51101	broad.mit.edu	36	8	79773254	79773254	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-1326-01	TCGA-25-1326-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	79773254	79773254	FAM164A	8	C	C	T	20
PKHD1L1	93035	broad.mit.edu	36	8	110604171	110604171	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-25-1326-01	TCGA-25-1326-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	110604171	110604171	PKHD1L1	8	G	G	C	35
FAM84B	157638	broad.mit.edu	36	8	127637931	127637931	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-25-1326-01	TCGA-25-1326-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	127637931	127637931	FAM84B	8	G	G	T	43
SCRIB	23513	broad.mit.edu	36	8	144967875	144967875	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-25-1326-01	TCGA-25-1326-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	144967875	144967875	SCRIB	8	A	A	C	8
PARP10	84875	broad.mit.edu	36	8	145130869	145130869	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-25-1326-01	TCGA-25-1326-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	145130869	145130869	PARP10	8	A	A	C	6
NFKBIL2	4796	broad.mit.edu	36	8	145632078	145632078	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-1326-01	TCGA-25-1326-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	145632078	145632078	NFKBIL2	8	C	C	T	27
RMI1	80010	broad.mit.edu	36	9	85806843	85806844	+	Nonsense_Mutation	DNP	TG	TG	AT	novel	Unknown	TCGA-25-1326-01	TCGA-25-1326-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Nonsense_Mutation	DNP	85806843	85806844	RMI1	9	TG	TG	AT	59
CENPP	401541	broad.mit.edu	36	9	94134349	94134349	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-25-1326-01	TCGA-25-1326-10			C	A	C	C	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	Broad	Missense_Mutation	SNP	94134349	94134349	CENPP	9	C	C	A	17
PTCH1	5727	broad.mit.edu	36	9	97258384	97258384	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-25-1326-01	TCGA-25-1326-10			C	A	C	C	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	Broad	Missense_Mutation	SNP	97258384	97258384	PTCH1	9	C	C	A	25
GALNT12	79695	broad.mit.edu	36	9	100625444	100625444	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-25-1326-01	TCGA-25-1326-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	100625444	100625444	GALNT12	9	C	C	G	24
INVS	27130	broad.mit.edu	36	9	102075166	102075167	+	Missense_Mutation	DNP	GA	GA	TT	novel	Unknown	TCGA-25-1326-01	TCGA-25-1326-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	DNP	102075166	102075167	INVS	9	GA	GA	TT	33
CTNNAL1	8727	broad.mit.edu	36	9	110779092	110779092	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-25-1326-01	TCGA-25-1326-10			T	G	T	T	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	Broad	Missense_Mutation	SNP	110779092	110779092	CTNNAL1	9	T	T	G	55
OR1K1	392392	broad.mit.edu	36	9	124602616	124602616	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-1326-01	TCGA-25-1326-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	124602616	124602616	OR1K1	9	C	C	T	22
C9orf106	414318	broad.mit.edu	36	9	131124423	131124423	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-25-1326-01	TCGA-25-1326-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	131124423	131124423	C9orf106	9	C	C	T	29
PRDM12	59335	broad.mit.edu	36	9	132531972	132531972	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-25-1326-01	TCGA-25-1326-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	132531972	132531972	PRDM12	9	T	T	G	59
CAMSAP1	157922	broad.mit.edu	36	9	137843003	137843003	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-25-1326-01	TCGA-25-1326-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	137843003	137843003	CAMSAP1	9	C	C	A	25
WWC3	55841	broad.mit.edu	36	X	10045308	10045308	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-25-1326-01	TCGA-25-1326-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	10045308	10045308	WWC3	23	C	C	G	23
HDX	139324	broad.mit.edu	36	X	83610663	83610663	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-25-1326-01	TCGA-25-1326-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	83610663	83610663	HDX	23	T	T	C	61
SLITRK2	84631	broad.mit.edu	36	X	144713171	144713171	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-25-1326-01	TCGA-25-1326-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	144713171	144713171	SLITRK2	23	A	A	C	3