Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	dataset	type	classification	start	end	gene	chr	ref_allele	tum_allele1	tum_allele2	context
ANO6	196527	hgsc.bcm.edu	36	12	44030730	44030730	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-25-1623-01	TCGA-25-1623-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	44030730	44030730	ANO6	12	G	G	C	33
CAPN5	726	hgsc.bcm.edu	36	11	76501392	76501392	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-25-1623-01	TCGA-25-1623-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	76501392	76501392	CAPN5	11	T	T	C	50
CARD14	79092	hgsc.bcm.edu	36	17	75790639	75790639	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-1623-01	TCGA-25-1623-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	75790639	75790639	CARD14	17	C	C	T	23
CYP4Z1	199974	hgsc.bcm.edu	36	1	47305806	47305806	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-25-1623-01	TCGA-25-1623-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	47305806	47305806	CYP4Z1	1	C	C	A	30
EZH1	2145	hgsc.bcm.edu	36	17	38108439	38108439	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-25-1623-01	TCGA-25-1623-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	38108439	38108439	EZH1	17	T	T	A	54
KALRN	8997	hgsc.bcm.edu	36	3	125600325	125600325	+	Nonsense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-1623-01	TCGA-25-1623-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Nonsense_Mutation	SNP	125600325	125600325	KALRN	3	C	C	T	25
KDM6A	7403	hgsc.bcm.edu	36	X	44807704	44807704	+	Nonsense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-1623-01	TCGA-25-1623-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Nonsense_Mutation	SNP	44807704	44807704	KDM6A	23	C	C	T	21
NR1H4	9971	hgsc.bcm.edu	36	12	99454957	99454957	+	Splice_Site_SNP	SNP	G	G	A	novel	Unknown	TCGA-25-1623-01	TCGA-25-1623-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Splice_Site_SNP	SNP	99454957	99454957	NR1H4	12	G	G	A	44
OR10H1	26539	hgsc.bcm.edu	36	19	15779380	15779380	+	Silent	SNP	C	C	T	rs28426969	Unknown	TCGA-25-1623-01	TCGA-25-1623-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	15779380	15779380	OR10H1	19	C	C	T	30
POLB	5423	hgsc.bcm.edu	36	8	42325742	42325742	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-1623-01	TCGA-25-1623-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	42325742	42325742	POLB	8	G	G	A	47
POU5F1	5460	hgsc.bcm.edu	36	6	31240988	31240988	+	Missense_Mutation	SNP	C	C	G	rs60346131	Unknown	TCGA-25-1623-01	TCGA-25-1623-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	31240988	31240988	POU5F1	6	C	C	G	31
PRDM2	7799	hgsc.bcm.edu	36	1	13978981	13978982	+	In_Frame_Ins	INS	-	-	CTC	rs2308040	Unknown	TCGA-25-1623-01	TCGA-25-1623-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	In_Frame_Ins	INS	13978981	13978982	PRDM2	1	-	-	CTC	2
PSD3	23362	hgsc.bcm.edu	36	8	18706348	18706348	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-25-1623-01	TCGA-25-1623-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	18706348	18706348	PSD3	8	A	A	G	1
SLC13A1	6561	hgsc.bcm.edu	36	7	122574465	122574465	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-1623-01	TCGA-25-1623-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	122574465	122574465	SLC13A1	7	C	C	T	25
TMEM37	140738	hgsc.bcm.edu	36	2	119911121	119911121	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-25-1623-01	TCGA-25-1623-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	119911121	119911121	TMEM37	2	A	A	C	10
TP53	7157	hgsc.bcm.edu	36	17	7517819	7517819	+	Missense_Mutation	SNP	G	G	A	rs28934574	Unknown	TCGA-25-1623-01	TCGA-25-1623-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	7517819	7517819	TP53	17	G	G	A	39
UBR4	23352	hgsc.bcm.edu	36	1	19314688	19314688	+	Silent	SNP	A	A	C	novel	Unknown	TCGA-25-1623-01	TCGA-25-1623-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	19314688	19314688	UBR4	1	A	A	C	9
VANGL2	57216	hgsc.bcm.edu	36	1	158656913	158656913	+	Missense_Mutation	SNP	G	G	A	rs61744131	Unknown	TCGA-25-1623-01	TCGA-25-1623-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	158656913	158656913	VANGL2	1	G	G	A	40
ZNF267	10308	hgsc.bcm.edu	36	16	31834456	31834456	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-25-1623-01	TCGA-25-1623-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	31834456	31834456	ZNF267	16	A	A	G	1