Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	dataset	type	classification	start	end	gene	chr	ref_allele	tum_allele1	tum_allele2	context
BLK	640	hgsc.bcm.edu	36	8	11452930	11452930	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-1627-01	TCGA-25-1627-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	11452930	11452930	BLK	8	C	C	T	22
BMP1	649	hgsc.bcm.edu	36	8	22120354	22120354	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-1627-01	TCGA-25-1627-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	22120354	22120354	BMP1	8	C	C	T	18
CD274	29126	hgsc.bcm.edu	36	9	5452907	5452907	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-25-1627-01	TCGA-25-1627-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	5452907	5452907	CD274	9	G	G	T	35
CNTNAP2	26047	hgsc.bcm.edu	36	7	147743507	147743507	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-1627-01	TCGA-25-1627-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	147743507	147743507	CNTNAP2	7	C	C	T	23
COL22A1	169044	hgsc.bcm.edu	36	8	139705180	139705180	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-25-1627-01	TCGA-25-1627-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	139705180	139705180	COL22A1	8	T	T	C	64
DDB1	1642	hgsc.bcm.edu	36	11	60838245	60838245	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-25-1627-01	TCGA-25-1627-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	60838245	60838245	DDB1	11	C	C	G	30
DMD	1756	hgsc.bcm.edu	36	X	31407088	31407088	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-25-1627-01	TCGA-25-1627-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	31407088	31407088	DMD	23	C	C	T	32
DNAH5	1767	hgsc.bcm.edu	36	5	13883837	13883837	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-25-1627-01	TCGA-25-1627-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	13883837	13883837	DNAH5	5	G	G	T	42
EWSR1	2130	hgsc.bcm.edu	36	22	28013064	28013064	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-25-1627-01	TCGA-25-1627-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	28013064	28013064	EWSR1	22	G	G	T	41
FAM5B	57795	hgsc.bcm.edu	36	1	175509332	175509332	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-25-1627-01	TCGA-25-1627-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	175509332	175509332	FAM5B	1	A	A	G	11
HLX	3142	hgsc.bcm.edu	36	1	219124398	219124398	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-1627-01	TCGA-25-1627-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	219124398	219124398	HLX	1	G	G	A	40
IDE	3416	hgsc.bcm.edu	36	10	94259867	94259867	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-25-1627-01	TCGA-25-1627-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	94259867	94259867	IDE	10	T	T	G	64
KAT2B	8850	hgsc.bcm.edu	36	3	20111785	20111785	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-1627-01	TCGA-25-1627-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	20111785	20111785	KAT2B	3	G	G	A	48
MAN2B1	4125	hgsc.bcm.edu	36	19	12636781	12636781	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-25-1627-01	TCGA-25-1627-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	12636781	12636781	MAN2B1	19	T	T	C	52
MURC	347273	hgsc.bcm.edu	36	9	102388359	102388359	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-25-1627-01	TCGA-25-1627-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	102388359	102388359	MURC	9	C	C	G	27
OFCC1	266553	hgsc.bcm.edu	36	6	10008585	10008586	+	In_Frame_Ins	INS	-	-	GAG	novel	Unknown	TCGA-25-1627-01	TCGA-25-1628-10A-01W-0615-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	In_Frame_Ins	INS	10008585	10008586	OFCC1	6	-	-	GAG	55
PCSK7	9159	hgsc.bcm.edu	36	11	116583912	116583912	+	Silent	SNP	A	A	C	rs596314	Unknown	TCGA-25-1627-01	TCGA-25-1627-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	116583912	116583912	PCSK7	11	A	A	C	5
PDE1A	5136	hgsc.bcm.edu	36	2	183095267	183095267	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-25-1627-01	TCGA-25-1627-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	183095267	183095267	PDE1A	2	A	A	G	6
PDE3A	5139	hgsc.bcm.edu	36	12	20679213	20679213	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-25-1627-01	TCGA-25-1627-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	20679213	20679213	PDE3A	12	G	G	C	34
PIK3R4	30849	hgsc.bcm.edu	36	3	131946116	131946116	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-25-1627-01	TCGA-25-1627-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	131946116	131946116	PIK3R4	3	C	C	G	32
PLCH1	23007	hgsc.bcm.edu	36	3	156715336	156715336	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-25-1627-01	TCGA-25-1627-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	156715336	156715336	PLCH1	3	G	G	T	33
PRKCB	5579	hgsc.bcm.edu	36	16	23907388	23907388	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-25-1627-01	TCGA-25-1627-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	23907388	23907388	PRKCB	16	C	C	T	27
TMPRSS15	5651	hgsc.bcm.edu	36	21	18623405	18623405	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-1627-01	TCGA-25-1627-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	18623405	18623405	TMPRSS15	21	C	C	T	31
RAD54L	8438	hgsc.bcm.edu	36	1	46488323	46488323	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-1627-01	TCGA-25-1627-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	46488323	46488323	RAD54L	1	G	G	A	39
SCN2A	6326	hgsc.bcm.edu	36	2	165907051	165907051	+	Splice_Site_SNP	SNP	G	G	A	novel	Unknown	TCGA-25-1627-01	TCGA-25-1627-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Splice_Site_SNP	SNP	165907051	165907051	SCN2A	2	G	G	A	35
SEMA4A	64218	hgsc.bcm.edu	36	1	154397868	154397868	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-25-1627-01	TCGA-25-1627-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	154397868	154397868	SEMA4A	1	C	C	T	19
SMC2	10592	hgsc.bcm.edu	36	9	105915480	105915480	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-25-1627-01	TCGA-25-1627-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	105915480	105915480	SMC2	9	G	G	A	33
TET1	80312	hgsc.bcm.edu	36	10	70002755	70002755	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-25-1627-01	TCGA-25-1627-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	70002755	70002755	TET1	10	G	G	C	47
TMPO	7112	hgsc.bcm.edu	36	12	97465572	97465572	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-25-1627-01	TCGA-25-1627-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	97465572	97465572	TMPO	12	T	T	C	51
TP53	7157	hgsc.bcm.edu	36	17	7518915	7518915	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-25-1627-01	TCGA-25-1627-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	7518915	7518915	TP53	17	T	T	C	49
TRIM58	25893	hgsc.bcm.edu	36	1	246106056	246106056	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-25-1627-01	TCGA-25-1627-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	246106056	246106056	TRIM58	1	C	C	A	21
TTF2	8458	hgsc.bcm.edu	36	1	117436944	117436944	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-25-1627-01	TCGA-25-1627-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	117436944	117436944	TTF2	1	G	G	C	45