Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer dataset type classification start end gene chr ref_allele tum_allele1 tum_allele2 context PTPRF 5792 broad.mit.edu 36 1 43847746 43847746 + Nonsense_Mutation SNP C C G novel Unknown TCGA-25-2404-01 TCGA-25-2404-10 Unknown Unknown Unknown x x --- x Broad Nonsense_Mutation SNP 43847746 43847746 PTPRF 1 C C G 18 SYT11 23208 broad.mit.edu 36 1 154104980 154104980 + Missense_Mutation SNP C C A novel Unknown TCGA-25-2404-01 TCGA-25-2404-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 154104980 154104980 SYT11 1 C C A 18 ARHGAP30 257106 broad.mit.edu 36 1 159290802 159290802 + Missense_Mutation SNP C C A novel Unknown TCGA-25-2404-01 TCGA-25-2404-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 159290802 159290802 ARHGAP30 1 C C A 19 NEBL 10529 broad.mit.edu 36 10 21174197 21174197 + Missense_Mutation SNP C C T novel Unknown TCGA-25-2404-01 TCGA-25-2404-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 21174197 21174197 NEBL 10 C C T 24 SVIL 6840 broad.mit.edu 36 10 29861015 29861015 + Missense_Mutation SNP G G A novel Unknown TCGA-25-2404-01 TCGA-25-2404-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 29861015 29861015 SVIL 10 G G A 33 IFIT2 3433 broad.mit.edu 36 10 91056285 91056285 + Missense_Mutation SNP C C G novel Unknown TCGA-25-2404-01 TCGA-25-2404-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 91056285 91056285 IFIT2 10 C C G 32 TRPM5 29850 broad.mit.edu 36 11 2389306 2389306 + Silent SNP G G A novel Unknown TCGA-25-2404-01 TCGA-25-2404-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 2389306 2389306 TRPM5 11 G G A 33 OR51B6 390058 broad.mit.edu 36 11 5329645 5329645 + Missense_Mutation SNP G G A novel Unknown TCGA-25-2404-01 TCGA-25-2404-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 5329645 5329645 OR51B6 11 G G A 44 OAS2 4939 broad.mit.edu 36 12 111927340 111927340 + Missense_Mutation SNP C C A novel Unknown TCGA-25-2404-01 TCGA-25-2404-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 111927340 111927340 OAS2 12 C C A 28 TM6SF1 53346 broad.mit.edu 36 15 81596364 81596364 + Missense_Mutation SNP C C T novel Unknown TCGA-25-2404-01 TCGA-25-2404-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 81596364 81596364 TM6SF1 15 C C T 26 ZP2 7783 broad.mit.edu 36 16 21130366 21130366 + Missense_Mutation SNP C C A novel Unknown TCGA-25-2404-01 TCGA-25-2404-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 21130366 21130366 ZP2 16 C C A 26 TP53 7157 broad.mit.edu 36 17 7518933 7518933 + Missense_Mutation SNP T T C novel Unknown TCGA-25-2404-01 TCGA-25-2404-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 7518933 7518933 TP53 17 T T C 51 SLC16A3 9123 broad.mit.edu 36 17 77788974 77788974 + Missense_Mutation SNP G G C novel Unknown TCGA-25-2404-01 TCGA-25-2404-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 77788974 77788974 SLC16A3 17 G G C 40 MBP 4155 broad.mit.edu 36 18 72858147 72858147 + Missense_Mutation SNP G G A novel Unknown TCGA-25-2404-01 TCGA-25-2404-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 72858147 72858147 MBP 18 G G A 38 NLRP12 91662 broad.mit.edu 36 19 58993342 58993342 + Missense_Mutation SNP A A T novel Unknown TCGA-25-2404-01 TCGA-25-2404-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 58993342 58993342 NLRP12 19 A A T 7 ALMS1 7840 broad.mit.edu 36 2 73530813 73530813 + Silent SNP A A G novel Unknown TCGA-25-2404-01 TCGA-25-2404-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 73530813 73530813 ALMS1 2 A A G 3 SLC4A10 57282 broad.mit.edu 36 2 162515553 162515553 + Missense_Mutation SNP G G A novel Unknown TCGA-25-2404-01 TCGA-25-2404-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 162515553 162515553 SLC4A10 2 G G A 47 TTN 7273 broad.mit.edu 36 2 179218999 179218999 + Missense_Mutation SNP G G A novel Unknown TCGA-25-2404-01 TCGA-25-2404-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 179218999 179218999 TTN 2 G G A 35 SCG2 7857 broad.mit.edu 36 2 224170895 224170895 + Silent SNP C C T novel Unknown TCGA-25-2404-01 TCGA-25-2404-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 224170895 224170895 SCG2 2 C C T 19 YWHAB 7529 broad.mit.edu 36 20 42966059 42966059 + Missense_Mutation SNP C C G novel Unknown TCGA-25-2404-01 TCGA-25-2404-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 42966059 42966059 YWHAB 20 C C G 17 PPDPF 79144 broad.mit.edu 36 20 61623317 61623317 + Missense_Mutation SNP G G T novel Unknown TCGA-25-2404-01 TCGA-25-2404-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 61623317 61623317 PPDPF 20 G G T 43 IQCF3 401067 broad.mit.edu 36 3 51839526 51839526 + Missense_Mutation SNP G G A novel Unknown TCGA-25-2404-01 TCGA-25-2404-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 51839526 51839526 IQCF3 3 G G A 40 SNTN 132203 broad.mit.edu 36 3 63624748 63624748 + Silent SNP C C A novel Unknown TCGA-25-2404-01 TCGA-25-2404-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 63624748 63624748 SNTN 3 C C A 32 GABRR3 200959 broad.mit.edu 36 3 99214060 99214060 + Silent SNP G G A novel Unknown TCGA-25-2404-01 TCGA-25-2404-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 99214060 99214060 GABRR3 3 G G A 40 AMBN 258 broad.mit.edu 36 4 71497332 71497332 + Missense_Mutation SNP G G A novel Unknown TCGA-25-2404-01 TCGA-25-2404-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 71497332 71497332 AMBN 4 G G A 43 AGXT2L1 64850 broad.mit.edu 36 4 109888619 109888619 + Missense_Mutation SNP C C A novel Unknown TCGA-25-2404-01 TCGA-25-2404-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 109888619 109888619 AGXT2L1 4 C C A 30 NDST1 3340 broad.mit.edu 36 5 149895493 149895493 + Silent SNP G G A novel Unknown TCGA-25-2404-01 TCGA-25-2404-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 149895493 149895493 NDST1 5 G G A 38 KIF4B 285643 broad.mit.edu 36 5 154375434 154375434 + Missense_Mutation SNP C C G novel Unknown TCGA-25-2404-01 TCGA-25-2404-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 154375434 154375434 KIF4B 5 C C G 29 SYNGAP1 8831 broad.mit.edu 36 6 33519423 33519423 + Missense_Mutation SNP T T C novel Unknown TCGA-25-2404-01 TCGA-25-2404-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 33519423 33519423 SYNGAP1 6 T T C 52 KCTD20 222658 broad.mit.edu 36 6 36557492 36557492 + Silent SNP A A T novel Unknown TCGA-25-2404-01 TCGA-25-2404-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 36557492 36557492 KCTD20 6 A A T 5 ZNF318 24149 broad.mit.edu 36 6 43433287 43433287 + Missense_Mutation SNP C C T novel Unknown TCGA-25-2404-01 TCGA-25-2404-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 43433287 43433287 ZNF318 6 C C T 23 FAM83B 222584 broad.mit.edu 36 6 54914497 54914497 + Silent SNP T T G novel Unknown TCGA-25-2404-01 TCGA-25-2404-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 54914497 54914497 FAM83B 6 T T G 62 COL12A1 1303 broad.mit.edu 36 6 75890707 75890707 + Silent SNP T T C novel Unknown TCGA-25-2404-01 TCGA-25-2404-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 75890707 75890707 COL12A1 6 T T C 60 MICALL2 79778 broad.mit.edu 36 7 1454828 1454828 + Missense_Mutation SNP C C G novel Unknown TCGA-25-2404-01 TCGA-25-2404-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 1454828 1454828 MICALL2 7 C C G 29 WIPI2 26100 broad.mit.edu 36 7 5205797 5205797 + Missense_Mutation SNP G G C novel Unknown TCGA-25-2404-01 TCGA-25-2404-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 5205797 5205797 WIPI2 7 G G C 41 OGDH 4967 broad.mit.edu 36 7 44704337 44704337 + Missense_Mutation SNP C C A novel Unknown TCGA-25-2404-01 TCGA-25-2404-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 44704337 44704337 OGDH 7 C C A 23 UNC5D 137970 broad.mit.edu 36 8 35736450 35736450 + Missense_Mutation SNP G G T novel Unknown TCGA-25-2404-01 TCGA-25-2404-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 35736450 35736450 UNC5D 8 G G T 43 CHMP4C 92421 broad.mit.edu 36 8 82830160 82830160 + Missense_Mutation SNP G G A novel Unknown TCGA-25-2404-01 TCGA-25-2404-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 82830160 82830160 CHMP4C 8 G G A 43 VPS13B 157680 broad.mit.edu 36 8 100901489 100901489 + Missense_Mutation SNP T T A novel Unknown TCGA-25-2404-01 TCGA-25-2404-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 100901489 100901489 VPS13B 8 T T A 60 C9orf167 54863 broad.mit.edu 36 9 139292970 139292970 + Missense_Mutation SNP G G A novel Unknown TCGA-25-2404-01 TCGA-25-2404-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 139292970 139292970 C9orf167 9 G G A 38 CACNA1B 774 broad.mit.edu 36 9 140074012 140074012 + Missense_Mutation SNP T T A novel Unknown TCGA-25-2404-01 TCGA-25-2404-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 140074012 140074012 CACNA1B 9 T T A 57 CXorf38 159013 broad.mit.edu 36 X 40381332 40381332 + Missense_Mutation SNP C C G novel Unknown TCGA-25-2404-01 TCGA-25-2404-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 40381332 40381332 CXorf38 23 C C G 32 ZMYM3 9203 broad.mit.edu 36 X 70382597 70382597 + Nonsense_Mutation SNP G G T novel Unknown TCGA-25-2404-01 TCGA-25-2404-10 Unknown Unknown Unknown x x --- x Broad Nonsense_Mutation SNP 70382597 70382597 ZMYM3 23 G G T 42 POU3F4 5456 broad.mit.edu 36 X 82650625 82650625 + Missense_Mutation SNP G G T novel Unknown TCGA-25-2404-01 TCGA-25-2404-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 82650625 82650625 POU3F4 23 G G T 42 NAA10 8260 broad.mit.edu 36 X 152848718 152848718 + Missense_Mutation SNP G G T novel Unknown TCGA-25-2404-01 TCGA-25-2404-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 152848718 152848718 NAA10 23 G G T 48