Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer dataset type classification start end gene chr ref_allele tum_allele1 tum_allele2 context AJAP1 55966 broad.mit.edu 36 1 4671908 4671908 + Missense_Mutation SNP G G A novel Unknown TCGA-25-2409-01 TCGA-25-2409-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 4671908 4671908 AJAP1 1 G G A 38 PGD 5226 broad.mit.edu 36 1 10400053 10400053 + Missense_Mutation SNP C C G novel Unknown TCGA-25-2409-01 TCGA-25-2409-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 10400053 10400053 PGD 1 C C G 29 MAPK8IP1 9479 broad.mit.edu 36 11 45882247 45882247 + Missense_Mutation SNP A A G novel Unknown TCGA-25-2409-01 TCGA-25-2409-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 45882247 45882247 MAPK8IP1 11 A A G 16 MBD6 114785 broad.mit.edu 36 12 56206062 56206062 + Silent SNP C C G novel Unknown TCGA-25-2409-01 TCGA-25-2409-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 56206062 56206062 MBD6 12 C C G 22 OR4N2 390429 broad.mit.edu 36 14 19365760 19365760 + Missense_Mutation SNP C C T novel Unknown TCGA-25-2409-01 TCGA-25-2409-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 19365760 19365760 OR4N2 14 C C T 25 MYH7 4625 broad.mit.edu 36 14 22965067 22965067 + Missense_Mutation SNP C C T novel Unknown TCGA-25-2409-01 TCGA-25-2409-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 22965067 22965067 MYH7 14 C C T 27 LRFN5 145581 broad.mit.edu 36 14 41425761 41425761 + Missense_Mutation SNP T T A novel Unknown TCGA-25-2409-01 TCGA-25-2409-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 41425761 41425761 LRFN5 14 T T A 52 DNAJA3 9093 broad.mit.edu 36 16 4431521 4431521 + Missense_Mutation SNP G G A novel Unknown TCGA-25-2409-01 TCGA-25-2409-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 4431521 4431521 DNAJA3 16 G G A 37 TP53 7157 broad.mit.edu 36 17 7518264 7518264 + Missense_Mutation SNP G G A novel Unknown TCGA-25-2409-01 TCGA-25-2409-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 7518264 7518264 TP53 17 G G A 39 ARHGEF18 23370 broad.mit.edu 36 19 7412889 7412889 + Silent SNP C C T novel Unknown TCGA-25-2409-01 TCGA-25-2409-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 7412889 7412889 ARHGEF18 19 C C T 19 ZNF324B 388569 broad.mit.edu 36 19 63657489 63657489 + Silent SNP C C T novel Unknown TCGA-25-2409-01 TCGA-25-2409-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 63657489 63657489 ZNF324B 19 C C T 22 TPO 7173 broad.mit.edu 36 2 1467407 1467407 + Silent SNP C C T novel Unknown TCGA-25-2409-01 TCGA-25-2409-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 1467407 1467407 TPO 2 C C T 30 SDC1 6382 broad.mit.edu 36 2 20267222 20267222 + Missense_Mutation SNP G G A novel Unknown TCGA-25-2409-01 TCGA-25-2409-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 20267222 20267222 SDC1 2 G G A 47 PTCD3 55037 broad.mit.edu 36 2 86205641 86205641 + Silent SNP C C T novel Unknown TCGA-25-2409-01 TCGA-25-2409-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 86205641 86205641 PTCD3 2 C C T 19 SGOL2 151246 broad.mit.edu 36 2 201145883 201145883 + Missense_Mutation SNP C C G novel Unknown TCGA-25-2409-01 TCGA-25-2409-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 201145883 201145883 SGOL2 2 C C G 17 IQCA1 79781 broad.mit.edu 36 2 237060261 237060261 + Missense_Mutation SNP G G A novel Unknown TCGA-25-2409-01 TCGA-25-2409-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 237060261 237060261 IQCA1 2 G G A 40 SH3D19 152503 broad.mit.edu 36 4 152268306 152268306 + Missense_Mutation SNP T T G novel Unknown TCGA-25-2409-01 TCGA-25-2409-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 152268306 152268306 SH3D19 4 T T G 56 THBS2 7058 broad.mit.edu 36 6 169392752 169392752 + Splice_Site_SNP SNP C C T novel Unknown TCGA-25-2409-01 TCGA-25-2409-10 Unknown Unknown Unknown x x --- x Broad Splice_Site_SNP SNP 169392752 169392752 THBS2 6 C C T 18 GPR141 353345 broad.mit.edu 36 7 37747434 37747434 + Missense_Mutation SNP G G A novel Unknown TCGA-25-2409-01 TCGA-25-2409-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 37747434 37747434 GPR141 7 G G A 40 PCM1 5108 broad.mit.edu 36 8 17916392 17916392 + Silent SNP T T C novel Unknown TCGA-25-2409-01 TCGA-25-2409-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 17916392 17916392 PCM1 8 T T C 55 C8orf58 541565 broad.mit.edu 36 8 22514410 22514410 + Silent SNP C C A novel Unknown TCGA-25-2409-01 TCGA-25-2409-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 22514410 22514410 C8orf58 8 C C A 23 VPS13B 157680 broad.mit.edu 36 8 100935634 100935634 + Missense_Mutation SNP A A G novel Unknown TCGA-25-2409-01 TCGA-25-2409-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 100935634 100935634 VPS13B 8 A A G 16 DEPDC6 64798 broad.mit.edu 36 8 120955374 120955374 + Missense_Mutation SNP C C G novel Unknown TCGA-25-2409-01 TCGA-25-2409-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 120955374 120955374 DEPDC6 8 C C G 18 S1PR3 1903 broad.mit.edu 36 9 90806353 90806353 + Missense_Mutation SNP A A G novel Unknown TCGA-25-2409-01 TCGA-25-2409-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 90806353 90806353 S1PR3 9 A A G 4 HABP4 22927 broad.mit.edu 36 9 98260549 98260549 + Missense_Mutation SNP G G A novel Unknown TCGA-25-2409-01 TCGA-25-2409-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 98260549 98260549 HABP4 9 G G A 46 OR1L1 26737 broad.mit.edu 36 9 124464064 124464064 + Silent SNP G G A novel Unknown TCGA-25-2409-01 TCGA-25-2409-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 124464064 124464064 OR1L1 9 G G A 45 ENG 2022 broad.mit.edu 36 9 129627395 129627395 + Missense_Mutation SNP A A G novel Unknown TCGA-25-2409-01 TCGA-25-2409-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 129627395 129627395 ENG 9 A A G 11 APOB 338 broad.mit.edu 36 2 21079460 21079484 + Frame_Shift_Del DEL CTCAGCATTGTTCTGCAGATTTCTT - CTCAGCATTGTTCTGCAGATTTCTT novel Unknown TCGA-25-2409-01 TCGA-25-2409-10 Unknown Unknown Unknown Phase_I Capture --- Illumina GAIIx Broad Frame_Shift_Del DEL 21079460 21079484 APOB 2 CTCAGCATTGTTCTGCAGATTTCTT - CTCAGCATTGTTCTGCAGATTTCTT 20