Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	dataset	type	classification	start	end	gene	chr	ref_allele	tum_allele1	tum_allele2	context
ANO3	63982	hgsc.bcm.edu	36	11	26617345	26617345	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-36-1568-01	TCGA-36-1568-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	26617345	26617345	ANO3	11	T	T	A	56
APLF	200558	hgsc.bcm.edu	36	2	68658523	68658523	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-36-1568-01	TCGA-36-1568-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	68658523	68658523	APLF	2	C	C	A	28
APOB	338	hgsc.bcm.edu	36	2	21084401	21084401	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-36-1568-01	TCGA-36-1568-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	21084401	21084401	APOB	2	G	G	A	45
APTX	54840	hgsc.bcm.edu	36	9	32978112	32978118	+	Frame_Shift_Del	DEL	TCTGCTT	TCTGCTT	-	novel	Unknown	TCGA-36-1568-01	TCGA-36-1568-10	TCTGCTT	TCTGCTT	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Frame_Shift_Del	DEL	32978112	32978118	APTX	9	TCTGCTT	TCTGCTT	-	54
ARFGEF1	10565	hgsc.bcm.edu	36	8	68286377	68286377	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-36-1568-01	TCGA-36-1568-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	68286377	68286377	ARFGEF1	8	T	T	C	49
CARD6	84674	hgsc.bcm.edu	36	5	40889849	40889849	+	Silent	SNP	A	A	T	novel	Unknown	TCGA-36-1568-01	TCGA-36-1568-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	40889849	40889849	CARD6	5	A	A	T	13
CCDC141	285025	hgsc.bcm.edu	36	2	179410073	179410073	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-36-1568-01	TCGA-36-1568-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	179410073	179410073	CCDC141	2	C	C	A	24
COL22A1	169044	hgsc.bcm.edu	36	8	139772290	139772290	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-36-1568-01	TCGA-36-1568-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	139772290	139772290	COL22A1	8	C	C	T	23
COL6A3	1293	hgsc.bcm.edu	36	2	237950405	237950405	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-36-1568-01	TCGA-36-1568-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	237950405	237950405	COL6A3	2	A	A	C	6
CPXCR1	53336	hgsc.bcm.edu	36	X	87895687	87895687	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-36-1568-01	TCGA-36-1568-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	87895687	87895687	CPXCR1	23	C	C	T	23
CRISPLD1	83690	hgsc.bcm.edu	36	8	76087259	76087259	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-36-1568-01	TCGA-36-1568-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	76087259	76087259	CRISPLD1	8	T	T	A	55
CSRNP3	80034	hgsc.bcm.edu	36	2	166243961	166243961	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-36-1568-01	TCGA-36-1568-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	166243961	166243961	CSRNP3	2	G	G	C	48
CUX1	1523	hgsc.bcm.edu	36	7	101630092	101630092	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-36-1568-01	TCGA-36-1568-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	101630092	101630092	CUX1	7	G	G	T	37
CYFIP1	23191	hgsc.bcm.edu	36	15	20479891	20479891	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-36-1568-01	TCGA-36-1568-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	20479891	20479891	CYFIP1	15	G	G	C	33
DMTF1	9988	hgsc.bcm.edu	36	7	86638306	86638306	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-36-1568-01	TCGA-36-1568-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	86638306	86638306	DMTF1	7	G	G	A	45
EIF4A2	1974	hgsc.bcm.edu	36	3	187984101	187984101	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-36-1568-01	TCGA-36-1568-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	187984101	187984101	EIF4A2	3	G	G	T	44
EXOC2	55770	hgsc.bcm.edu	36	6	582784	582802	+	Frame_Shift_Del	DEL	CCGGTCACAAGGGGGGGTT	CCGGTCACAAGGGGGGGTT	-	novel	Unknown	TCGA-36-1568-01	TCGA-36-1568-10	CCGGTCACAAGGGGGGGTT	CCGGTCACAAGGGGGGGTT	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Frame_Shift_Del	DEL	582784	582802	EXOC2	6	CCGGTCACAAGGGGGGGTT	CCGGTCACAAGGGGGGGTT	-	26
FAM129A	116496	hgsc.bcm.edu	36	1	183059456	183059456	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-36-1568-01	TCGA-36-1568-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	183059456	183059456	FAM129A	1	T	T	G	55
FAM71B	153745	hgsc.bcm.edu	36	5	156522348	156522348	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-36-1568-01	TCGA-36-1568-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	156522348	156522348	FAM71B	5	G	G	A	48
GAB2	9846	hgsc.bcm.edu	36	11	77615537	77615537	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-36-1568-01	TCGA-36-1568-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	77615537	77615537	GAB2	11	G	G	A	47
GPR113	165082	hgsc.bcm.edu	36	2	26387453	26387453	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-36-1568-01	TCGA-36-1568-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	26387453	26387453	GPR113	2	G	G	A	33
HFE2	148738	hgsc.bcm.edu	36	1	144127758	144127758	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-36-1568-01	TCGA-36-1568-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	144127758	144127758	HFE2	1	A	A	G	12
JAK2	3717	hgsc.bcm.edu	36	9	5062586	5062586	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-36-1568-01	TCGA-36-1568-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	5062586	5062586	JAK2	9	T	T	C	56
LAIR2	3904	hgsc.bcm.edu	36	19	59711144	59711144	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-36-1568-01	TCGA-36-1568-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	59711144	59711144	LAIR2	19	T	T	C	50
MAK16	84549	hgsc.bcm.edu	36	8	33472621	33472621	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-36-1568-01	TCGA-36-1568-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	33472621	33472621	MAK16	8	C	C	T	28
MOXD1	26002	hgsc.bcm.edu	36	6	132660118	132660118	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-36-1568-01	TCGA-36-1568-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	132660118	132660118	MOXD1	6	A	A	G	16
MYCN	4613	hgsc.bcm.edu	36	2	15999859	15999859	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-36-1568-01	TCGA-36-1568-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	15999859	15999859	MYCN	2	C	C	G	22
MYH11	4629	hgsc.bcm.edu	36	16	15777486	15777486	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-36-1568-01	TCGA-36-1568-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	15777486	15777486	MYH11	16	G	G	C	48
NCKAP1L	3071	hgsc.bcm.edu	36	12	53179515	53179515	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-36-1568-01	TCGA-36-1568-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	53179515	53179515	NCKAP1L	12	C	C	T	19
PCSK1	5122	hgsc.bcm.edu	36	5	95787360	95787360	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-36-1568-01	TCGA-36-1568-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	95787360	95787360	PCSK1	5	C	C	G	32
PTCHD1	139411	hgsc.bcm.edu	36	X	23307779	23307779	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-36-1568-01	TCGA-36-1568-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	23307779	23307779	PTCHD1	23	C	C	A	31
RBPJ	3516	hgsc.bcm.edu	36	4	26041436	26041436	+	Silent	SNP	C	C	T	rs1064380	Unknown	TCGA-36-1568-01	TCGA-36-1568-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	26041436	26041436	RBPJ	4	C	C	T	31
RNASEL	6041	hgsc.bcm.edu	36	1	180822439	180822439	+	Frame_Shift_Del	DEL	C	C	-	novel	Unknown	TCGA-36-1568-01	TCGA-36-1568-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Frame_Shift_Del	DEL	180822439	180822439	RNASEL	1	C	C	-	28
RNF213	57674	hgsc.bcm.edu	36	17	75934929	75934929	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-36-1568-01	TCGA-36-1568-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	75934929	75934929	RNF213	17	G	G	A	47
SEMA4A	64218	hgsc.bcm.edu	36	1	154397905	154397905	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-36-1568-01	TCGA-36-1568-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	154397905	154397905	SEMA4A	1	C	C	T	21
SNX8	29886	hgsc.bcm.edu	36	7	2278112	2278112	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-36-1568-01	TCGA-36-1568-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	2278112	2278112	SNX8	7	C	C	A	26
SPOP	8405	hgsc.bcm.edu	36	17	45039703	45039703	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-36-1568-01	TCGA-36-1568-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Nonsense_Mutation	SNP	45039703	45039703	SPOP	17	C	C	A	29
ST18	9705	hgsc.bcm.edu	36	8	53188438	53188438	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-36-1568-01	TCGA-36-1568-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	53188438	53188438	ST18	8	T	T	A	54
TEX11	56159	hgsc.bcm.edu	36	X	69861895	69861895	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-36-1568-01	TCGA-36-1568-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	69861895	69861895	TEX11	23	A	A	G	1
TLR8	51311	hgsc.bcm.edu	36	X	12848977	12848977	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-36-1568-01	TCGA-36-1568-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	12848977	12848977	TLR8	23	T	T	A	54
TP53	7157	hgsc.bcm.edu	36	17	7518273	7518273	+	Missense_Mutation	SNP	C	C	T	rs28934575	Unknown	TCGA-36-1568-01	TCGA-36-1568-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	7518273	7518273	TP53	17	C	C	T	23
UNG	7374	hgsc.bcm.edu	36	12	108020600	108020600	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-36-1568-01	TCGA-36-1568-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	108020600	108020600	UNG	12	T	T	C	54
ZC3H13	23091	hgsc.bcm.edu	36	13	45517620	45517620	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-36-1568-01	TCGA-36-1568-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	45517620	45517620	ZC3H13	13	G	G	A	45