Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	dataset	type	classification	start	end	gene	chr	ref_allele	tum_allele1	tum_allele2	context
ABCC2	1244	hgsc.bcm.edu	36	10	101568631	101568631	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-36-1577-01	TCGA-36-1577-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	101568631	101568631	ABCC2	10	C	C	G	32
ABHD6	57406	hgsc.bcm.edu	36	3	58246189	58246189	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-36-1577-01	TCGA-36-1577-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	58246189	58246189	ABHD6	3	C	C	T	23
ACE	1636	hgsc.bcm.edu	36	17	58925479	58925479	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-36-1577-01	TCGA-36-1577-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	58925479	58925479	ACE	17	G	G	A	42
AMHR2	269	hgsc.bcm.edu	36	12	52105797	52105797	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-36-1577-01	TCGA-36-1577-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	52105797	52105797	AMHR2	12	G	G	C	44
ANO10	55129	hgsc.bcm.edu	36	3	43449204	43449204	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-36-1577-01	TCGA-36-1577-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	43449204	43449204	ANO10	3	T	T	C	56
APOB	338	hgsc.bcm.edu	36	2	21091467	21091467	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-36-1577-01	TCGA-36-1577-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	21091467	21091467	APOB	2	C	C	T	22
AQP3	360	hgsc.bcm.edu	36	9	33432355	33432356	+	Frame_Shift_Ins	INS	-	-	A	novel	Unknown	TCGA-36-1577-01	TCGA-36-1577-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Frame_Shift_Ins	INS	33432355	33432356	AQP3	9	-	-	A	22
ARID1B	57492	hgsc.bcm.edu	36	6	157569307	157569307	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-36-1577-01	TCGA-36-1577-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	157569307	157569307	ARID1B	6	A	A	G	3
ATP10A	57194	hgsc.bcm.edu	36	15	23476013	23476014	+	Frame_Shift_Ins	INS	-	-	AA	novel	Unknown	TCGA-36-1577-01	TCGA-36-1577-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Frame_Shift_Ins	INS	23476013	23476014	ATP10A	15	-	-	AA	48
C10orf12	26148	hgsc.bcm.edu	36	10	98733842	98733845	+	Frame_Shift_Del	DEL	CTGT	CTGT	-	novel	Unknown	TCGA-36-1577-01	TCGA-36-1577-10	CTGT	CTGT	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Frame_Shift_Del	DEL	98733842	98733845	C10orf12	10	CTGT	CTGT	-	24
C6orf27	80737	hgsc.bcm.edu	36	6	31841522	31841522	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-36-1577-01	TCGA-36-1577-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	31841522	31841522	C6orf27	6	C	C	T	23
C7orf31	136895	hgsc.bcm.edu	36	7	25148909	25148909	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-36-1577-01	TCGA-36-1577-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	25148909	25148909	C7orf31	7	G	G	C	35
CDC27	996	hgsc.bcm.edu	36	17	42602388	42602388	+	Frame_Shift_Del	DEL	T	T	-	novel	Unknown	TCGA-36-1577-01	TCGA-36-1577-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Frame_Shift_Del	DEL	42602388	42602388	CDC27	17	T	T	-	52
CENPJ	55835	hgsc.bcm.edu	36	13	24382157	24382157	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-36-1577-01	TCGA-36-1577-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	24382157	24382157	CENPJ	13	C	C	G	32
CHD4	1108	hgsc.bcm.edu	36	12	6574788	6574788	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-36-1577-01	TCGA-36-1577-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	6574788	6574788	CHD4	12	C	C	A	32
CHML	1122	hgsc.bcm.edu	36	1	239864151	239864151	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-36-1577-01	TCGA-36-1577-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	239864151	239864151	CHML	1	G	G	C	33
CHMP4A	29082	hgsc.bcm.edu	36	14	23752488	23752488	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-36-1577-01	TCGA-36-1577-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	23752488	23752488	CHMP4A	14	C	C	A	27
CSMD3	114788	hgsc.bcm.edu	36	8	113416804	113416804	+	Silent	SNP	A	A	C	novel	Unknown	TCGA-36-1577-01	TCGA-36-1577-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	113416804	113416804	CSMD3	8	A	A	C	3
CSRNP1	64651	hgsc.bcm.edu	36	3	39161586	39161586	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-36-1577-01	TCGA-36-1577-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	39161586	39161586	CSRNP1	3	G	G	T	33
CTHRC1	115908	hgsc.bcm.edu	36	8	104459599	104459599	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-36-1577-01	TCGA-36-1577-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	104459599	104459599	CTHRC1	8	G	G	C	35
DAAM1	23002	hgsc.bcm.edu	36	14	58867691	58867693	+	In_Frame_Del	DEL	TGC	TGC	-	novel	Unknown	TCGA-36-1577-01	TCGA-36-1577-10	TGC	TGC	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	In_Frame_Del	DEL	58867691	58867693	DAAM1	14	TGC	TGC	-	59
DAD1	1603	hgsc.bcm.edu	36	14	22113848	22113850	+	In_Frame_Del	DEL	CAA	CAA	-	novel	Unknown	TCGA-36-1577-01	TCGA-36-1577-10	CAA	CAA	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	In_Frame_Del	DEL	22113848	22113850	DAD1	14	CAA	CAA	-	21
DBI	1622	hgsc.bcm.edu	36	2	119842252	119842252	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-36-1577-01	TCGA-36-1577-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	119842252	119842252	DBI	2	G	G	T	46
DLX1	1745	hgsc.bcm.edu	36	2	172659800	172659800	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-36-1577-01	TCGA-36-1577-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	172659800	172659800	DLX1	2	G	G	A	39
DMXL1	1657	hgsc.bcm.edu	36	5	118530287	118530287	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-36-1577-01	TCGA-36-1577-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	118530287	118530287	DMXL1	5	A	A	T	3
EPM2A	7957	hgsc.bcm.edu	36	6	145998235	145998235	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-36-1577-01	TCGA-36-1577-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	145998235	145998235	EPM2A	6	A	A	C	4
EXTL3	2137	hgsc.bcm.edu	36	8	28630037	28630038	+	In_Frame_Ins	INS	-	-	CCATGT	novel	Unknown	TCGA-36-1577-01	TCGA-36-1577-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	In_Frame_Ins	INS	28630037	28630038	EXTL3	8	-	-	CCATGT	2
FRMD4A	55691	hgsc.bcm.edu	36	10	13752497	13752497	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-36-1577-01	TCGA-36-1577-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	13752497	13752497	FRMD4A	10	T	T	C	50
FURIN	5045	hgsc.bcm.edu	36	15	89225685	89225685	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-36-1577-01	TCGA-36-1577-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	89225685	89225685	FURIN	15	G	G	A	43
GADD45GIP1	90480	hgsc.bcm.edu	36	19	12926323	12926323	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-36-1577-01	TCGA-36-1577-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	12926323	12926323	GADD45GIP1	19	T	T	C	54
GADD45GIP1	90480	hgsc.bcm.edu	36	19	12926326	12926326	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-36-1577-01	TCGA-36-1577-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	12926326	12926326	GADD45GIP1	19	G	G	T	46
GLIS2	84662	hgsc.bcm.edu	36	16	4323357	4323358	+	Frame_Shift_Ins	INS	-	-	T	novel	Unknown	TCGA-36-1577-01	TCGA-36-1577-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Frame_Shift_Ins	INS	4323357	4323358	GLIS2	16	-	-	T	28
GOLIM4	27333	hgsc.bcm.edu	36	3	169233012	169233012	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-36-1577-01	TCGA-36-1577-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	169233012	169233012	GOLIM4	3	G	G	T	38
GRM5	2915	hgsc.bcm.edu	36	11	87939936	87939936	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-36-1577-01	TCGA-36-1577-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	87939936	87939936	GRM5	11	C	C	T	27
HDAC7	51564	hgsc.bcm.edu	36	12	46466668	46466668	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-36-1577-01	TCGA-36-1577-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	46466668	46466668	HDAC7	12	C	C	T	26
HUWE1	10075	hgsc.bcm.edu	36	X	53594646	53594646	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-36-1577-01	TCGA-36-1577-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	53594646	53594646	HUWE1	23	T	T	C	51
IGSF11	152404	hgsc.bcm.edu	36	3	120104449	120104449	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-36-1577-01	TCGA-36-1577-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	120104449	120104449	IGSF11	3	C	C	T	29
IRS4	8471	hgsc.bcm.edu	36	X	107863092	107863092	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-36-1577-01	TCGA-36-1577-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	107863092	107863092	IRS4	23	C	C	G	17
ITIH1	3697	hgsc.bcm.edu	36	3	52788513	52788513	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-36-1577-01	TCGA-36-1577-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	52788513	52788513	ITIH1	3	T	T	G	52
JOSD1	9929	hgsc.bcm.edu	36	22	37425923	37425923	+	Frame_Shift_Del	DEL	A	A	-	novel	Unknown	TCGA-36-1577-01	TCGA-36-1577-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Frame_Shift_Del	DEL	37425923	37425923	JOSD1	22	A	A	-	8
KATNB1	10300	hgsc.bcm.edu	36	16	56347816	56347816	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-36-1577-01	TCGA-36-1577-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	56347816	56347816	KATNB1	16	T	T	A	64
KIAA0427	9811	hgsc.bcm.edu	36	18	44541794	44541794	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-36-1577-01	TCGA-36-1577-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	44541794	44541794	KIAA0427	18	G	G	C	33
KLK10	5655	hgsc.bcm.edu	36	19	56211177	56211177	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-36-1577-01	TCGA-36-1577-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	56211177	56211177	KLK10	19	C	C	A	30
LARP1	23367	hgsc.bcm.edu	36	5	154162068	154162069	+	In_Frame_Ins	INS	-	-	GAT	novel	Unknown	TCGA-36-1577-01	TCGA-36-1577-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	In_Frame_Ins	INS	154162068	154162069	LARP1	5	-	-	GAT	47
LCAT	3931	hgsc.bcm.edu	36	16	66531673	66531673	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-36-1577-01	TCGA-36-1577-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	66531673	66531673	LCAT	16	G	G	C	46
LRBA	987	hgsc.bcm.edu	36	4	151423206	151423206	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-36-1577-01	TCGA-36-1577-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	151423206	151423206	LRBA	4	C	C	T	24
LRP10	26020	hgsc.bcm.edu	36	14	22414216	22414216	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-36-1577-01	TCGA-36-1577-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	22414216	22414216	LRP10	14	G	G	A	43
LRP2	4036	hgsc.bcm.edu	36	2	169770382	169770382	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-36-1577-01	TCGA-36-1577-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	169770382	169770382	LRP2	2	C	C	G	21
LRRTM1	347730	hgsc.bcm.edu	36	2	80383587	80383587	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-36-1577-01	TCGA-36-1577-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	80383587	80383587	LRRTM1	2	T	T	C	60
MAGEA8	4107	hgsc.bcm.edu	36	X	148774495	148774495	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-36-1577-01	TCGA-36-1577-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	148774495	148774495	MAGEA8	23	C	C	A	27
MAN2C1	4123	hgsc.bcm.edu	36	15	73443428	73443428	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-36-1577-01	TCGA-36-1577-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	73443428	73443428	MAN2C1	15	G	G	C	44
MAP3K3	4215	hgsc.bcm.edu	36	17	59122227	59122227	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-36-1577-01	TCGA-36-1577-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	59122227	59122227	MAP3K3	17	C	C	A	28
MYH4	4622	hgsc.bcm.edu	36	17	10291142	10291142	+	Silent	SNP	T	T	A	novel	Unknown	TCGA-36-1577-01	TCGA-36-1577-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	10291142	10291142	MYH4	17	T	T	A	51
MYH8	4626	hgsc.bcm.edu	36	17	10258011	10258011	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-36-1577-01	TCGA-36-1577-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	10258011	10258011	MYH8	17	C	C	A	25
NEFH	4744	hgsc.bcm.edu	36	22	28215437	28215438	+	Frame_Shift_Ins	INS	-	-	G	novel	Unknown	TCGA-36-1577-01	TCGA-36-1577-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Frame_Shift_Ins	INS	28215437	28215438	NEFH	22	-	-	G	3
NOVA1	4857	hgsc.bcm.edu	36	14	25987867	25987867	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-36-1577-01	TCGA-36-1577-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	25987867	25987867	NOVA1	14	A	A	G	10
NR1H3	10062	hgsc.bcm.edu	36	11	47238769	47238769	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-36-1577-01	TCGA-36-1577-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	47238769	47238769	NR1H3	11	C	C	A	31
OR10H2	26538	hgsc.bcm.edu	36	19	15700642	15700642	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-36-1577-01	TCGA-36-1577-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	15700642	15700642	OR10H2	19	C	C	A	21
OXSR1	9943	hgsc.bcm.edu	36	3	38240307	38240307	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-36-1577-01	TCGA-36-1577-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	38240307	38240307	OXSR1	3	G	G	T	44
PCDH20	64881	hgsc.bcm.edu	36	13	60884665	60884665	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-36-1577-01	TCGA-36-1577-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	60884665	60884665	PCDH20	13	A	A	C	6
PDK3	5165	hgsc.bcm.edu	36	X	24433318	24433318	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-36-1577-01	TCGA-36-1577-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	24433318	24433318	PDK3	23	G	G	A	40
PKHD1	5314	hgsc.bcm.edu	36	6	52005908	52005908	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-36-1577-01	TCGA-36-1577-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	52005908	52005908	PKHD1	6	G	G	T	46
PKN3	29941	hgsc.bcm.edu	36	9	130521889	130521889	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-36-1577-01	TCGA-36-1577-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	130521889	130521889	PKN3	9	G	G	T	43
PLVAP	83483	hgsc.bcm.edu	36	19	17348777	17348777	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-36-1577-01	TCGA-36-1577-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	17348777	17348777	PLVAP	19	G	G	A	38
PLXNA1	5361	hgsc.bcm.edu	36	3	128229523	128229523	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-36-1577-01	TCGA-36-1577-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	128229523	128229523	PLXNA1	3	G	G	C	33
PRC1	9055	hgsc.bcm.edu	36	15	89313802	89313802	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-36-1577-01	TCGA-36-1577-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	89313802	89313802	PRC1	15	C	C	A	30
PRKD1	5587	hgsc.bcm.edu	36	14	29177749	29177749	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-36-1577-01	TCGA-36-1577-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	29177749	29177749	PRKD1	14	G	G	A	39
PRKD2	25865	hgsc.bcm.edu	36	19	51888994	51888994	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-36-1577-01	TCGA-36-1577-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	51888994	51888994	PRKD2	19	G	G	A	38
PROM2	150696	hgsc.bcm.edu	36	2	95308477	95308480	+	Frame_Shift_Del	DEL	GCCC	GCCC	-	novel	Unknown	TCGA-36-1577-01	TCGA-36-1577-10	GCCC	GCCC	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Frame_Shift_Del	DEL	95308477	95308480	PROM2	2	GCCC	GCCC	-	42
RIF1	55183	hgsc.bcm.edu	36	2	152033312	152033312	+	Splice_Site_SNP	SNP	G	G	C	novel	Unknown	TCGA-36-1577-01	TCGA-36-1577-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Splice_Site_SNP	SNP	152033312	152033312	RIF1	2	G	G	C	36
RIMBP2	23504	hgsc.bcm.edu	36	12	129463119	129463119	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-36-1577-01	TCGA-36-1577-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	129463119	129463119	RIMBP2	12	A	A	G	16
SCN1A	6323	hgsc.bcm.edu	36	2	166611528	166611528	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-36-1577-01	TCGA-36-1577-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Nonsense_Mutation	SNP	166611528	166611528	SCN1A	2	G	G	A	45
SDHA	6389	hgsc.bcm.edu	36	5	309484	309485	+	Frame_Shift_Del	DEL	TT	TT	-	novel	Unknown	TCGA-36-1577-01	TCGA-36-1577-10	TT	TT	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Frame_Shift_Del	DEL	309484	309485	SDHA	5	TT	TT	-	56
SGSM2	9905	hgsc.bcm.edu	36	17	2213626	2213627	+	Frame_Shift_Del	DEL	CA	CA	-	novel	Unknown	TCGA-36-1577-01	TCGA-36-1577-10	CA	CA	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Frame_Shift_Del	DEL	2213626	2213627	SGSM2	17	CA	CA	-	21
SLC17A7	57030	hgsc.bcm.edu	36	19	54631788	54631788	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-36-1577-01	TCGA-36-1577-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	54631788	54631788	SLC17A7	19	G	G	T	43
SMARCA1	6594	hgsc.bcm.edu	36	X	128458460	128458460	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-36-1577-01	TCGA-36-1577-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	128458460	128458460	SMARCA1	23	C	C	T	19
SORBS3	10174	hgsc.bcm.edu	36	8	22470232	22470232	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-36-1577-01	TCGA-36-1577-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	22470232	22470232	SORBS3	8	A	A	G	12
ST7L	54879	hgsc.bcm.edu	36	1	112886185	112886185	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-36-1577-01	TCGA-36-1577-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	112886185	112886185	ST7L	1	G	G	C	47
STAT3	6774	hgsc.bcm.edu	36	17	37743038	37743038	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-36-1577-01	TCGA-36-1577-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	37743038	37743038	STAT3	17	C	C	A	26
SULF2	55959	hgsc.bcm.edu	36	20	45727427	45727427	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-36-1577-01	TCGA-36-1577-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	45727427	45727427	SULF2	20	G	G	C	48
TCP11	6954	hgsc.bcm.edu	36	6	35196187	35196187	+	Silent	SNP	A	A	T	novel	Unknown	TCGA-36-1577-01	TCGA-36-1577-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	35196187	35196187	TCP11	6	A	A	T	7
TEX10	54881	hgsc.bcm.edu	36	9	102122463	102122463	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-36-1577-01	TCGA-36-1577-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	102122463	102122463	TEX10	9	G	G	C	37
TMOD2	29767	hgsc.bcm.edu	36	15	49846027	49846027	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-36-1577-01	TCGA-36-1577-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	49846027	49846027	TMOD2	15	G	G	C	41
TP53	7157	hgsc.bcm.edu	36	17	7518901	7518901	+	Splice_Site_SNP	SNP	C	C	A	novel	Unknown	TCGA-36-1577-01	TCGA-36-1577-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Splice_Site_SNP	SNP	7518901	7518901	TP53	17	C	C	A	18
TRIM41	90933	hgsc.bcm.edu	36	5	180594268	180594268	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-36-1577-01	TCGA-36-1577-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	180594268	180594268	TRIM41	5	A	A	C	5
TSPYL1	7259	hgsc.bcm.edu	36	6	116706778	116706778	+	Nonsense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-36-1577-01	TCGA-36-1577-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Nonsense_Mutation	SNP	116706778	116706778	TSPYL1	6	G	G	C	48
TXNDC12	51060	hgsc.bcm.edu	36	1	52259248	52259248	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-36-1577-01	TCGA-36-1577-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	52259248	52259248	TXNDC12	1	T	T	A	55
TXNL1	9352	hgsc.bcm.edu	36	18	52456581	52456581	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-36-1577-01	TCGA-36-1577-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	52456581	52456581	TXNL1	18	G	G	C	44
UBE4A	9354	hgsc.bcm.edu	36	11	117766648	117766651	+	Frame_Shift_Del	DEL	ACAG	ACAG	-	novel	Unknown	TCGA-36-1577-01	TCGA-36-1577-10	ACAG	ACAG	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Frame_Shift_Del	DEL	117766648	117766651	UBE4A	11	ACAG	ACAG	-	6
VAT1	10493	hgsc.bcm.edu	36	17	38424193	38424193	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-36-1577-01	TCGA-36-1577-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	38424193	38424193	VAT1	17	G	G	T	41
VLDLR	7436	hgsc.bcm.edu	36	9	2631485	2631485	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-36-1577-01	TCGA-36-1577-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	2631485	2631485	VLDLR	9	A	A	C	12
ZNF235	9310	hgsc.bcm.edu	36	19	49483319	49483319	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-36-1577-01	TCGA-36-1577-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	49483319	49483319	ZNF235	19	T	T	G	54
ZNF556	80032	hgsc.bcm.edu	36	19	2829120	2829120	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-36-1577-01	TCGA-36-1577-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	2829120	2829120	ZNF556	19	T	T	G	51