Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	dataset	type	classification	start	end	gene	chr	ref_allele	tum_allele1	tum_allele2	context
CDH26	60437	hgsc.bcm.edu	36	20	58021179	58021179	+	Frame_Shift_Del	DEL	A	A	-	novel	Unknown	TCGA-57-1583-01	TCGA-57-1583-11	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Frame_Shift_Del	DEL	58021179	58021179	CDH26	20	A	A	-	13
COL14A1	7373	hgsc.bcm.edu	36	8	121291214	121291214	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-57-1583-01	TCGA-57-1583-11	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	121291214	121291214	COL14A1	8	G	G	A	40
GPATCH8	23131	hgsc.bcm.edu	36	17	39831700	39831700	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-57-1583-01	TCGA-57-1583-11	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	39831700	39831700	GPATCH8	17	T	T	C	63
GPC2	221914	hgsc.bcm.edu	36	7	99611136	99611136	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-57-1583-01	TCGA-57-1583-11	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	99611136	99611136	GPC2	7	G	G	A	35
KIAA1529	57653	hgsc.bcm.edu	36	9	99119271	99119271	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-57-1583-01	TCGA-57-1583-11	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Nonsense_Mutation	SNP	99119271	99119271	KIAA1529	9	G	G	A	47
LEMD3	23592	hgsc.bcm.edu	36	12	63850524	63850525	+	Frame_Shift_Ins	INS	-	-	C	novel	Unknown	TCGA-57-1583-01	TCGA-57-1584-11A-01W-0615-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Frame_Shift_Ins	INS	63850524	63850525	LEMD3	12	-	-	C	54
MEGF10	84466	hgsc.bcm.edu	36	5	126783741	126783741	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-57-1583-01	TCGA-57-1583-11	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	126783741	126783741	MEGF10	5	C	C	T	19
PRPF31	26121	hgsc.bcm.edu	36	19	59323308	59323308	+	Frame_Shift_Del	DEL	C	C	-	novel	Unknown	TCGA-57-1583-01	TCGA-57-1583-11	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Frame_Shift_Del	DEL	59323308	59323308	PRPF31	19	C	C	-	25
SELE	6401	hgsc.bcm.edu	36	1	167967650	167967650	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-57-1583-01	TCGA-57-1583-11	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	167967650	167967650	SELE	1	T	T	C	52
ST3GAL2	6483	hgsc.bcm.edu	36	16	68973235	68973235	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-57-1583-01	TCGA-57-1583-11	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	68973235	68973235	ST3GAL2	16	C	C	T	23
TP53	7157	hgsc.bcm.edu	36	17	7518319	7518320	+	Frame_Shift_Del	DEL	AC	AC	-	novel	Unknown	TCGA-57-1583-01	TCGA-57-1583-11	AC	AC	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Frame_Shift_Del	DEL	7518319	7518320	TP53	17	AC	AC	-	14
WNT11	7481	hgsc.bcm.edu	36	11	75575791	75575791	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-57-1583-01	TCGA-57-1583-11	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	75575791	75575791	WNT11	11	C	C	T	17