Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer dataset type classification start end gene chr ref_allele tum_allele1 tum_allele2 context SPRR3 6707 broad.mit.edu 36 1 151242154 151242154 + Missense_Mutation SNP C C G novel Unknown TCGA-59-2350-01 TCGA-59-2350-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 151242154 151242154 SPRR3 1 C C G 22 PLXNA2 5362 broad.mit.edu 36 1 206283066 206283066 + Missense_Mutation SNP G G A novel Unknown TCGA-59-2350-01 TCGA-59-2350-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 206283066 206283066 PLXNA2 1 G G A 39 USH2A 7399 broad.mit.edu 36 1 214323453 214323453 + Missense_Mutation SNP C C T novel Unknown TCGA-59-2350-01 TCGA-59-2350-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 214323453 214323453 USH2A 1 C C T 19 C10orf137 26098 broad.mit.edu 36 10 127414265 127414265 + Silent SNP A A G novel Unknown TCGA-59-2350-01 TCGA-59-2350-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 127414265 127414265 C10orf137 10 A A G 3 MICALCL 84953 broad.mit.edu 36 11 12271730 12271730 + Missense_Mutation SNP G G T novel Unknown TCGA-59-2350-01 TCGA-59-2350-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 12271730 12271730 MICALCL 11 G G T 36 MICALCL 84953 broad.mit.edu 36 11 12272940 12272940 + Silent SNP T T C novel Unknown TCGA-59-2350-01 TCGA-59-2350-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 12272940 12272940 MICALCL 11 T T C 54 OR8K3 219473 broad.mit.edu 36 11 55843218 55843218 + Missense_Mutation SNP T T G novel Unknown TCGA-59-2350-01 TCGA-59-2350-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 55843218 55843218 OR8K3 11 T T G 63 ME3 10873 broad.mit.edu 36 11 85830125 85830125 + Silent SNP G G A novel Unknown TCGA-59-2350-01 TCGA-59-2350-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 85830125 85830125 ME3 11 G G A 37 ARHGEF12 23365 broad.mit.edu 36 11 119827526 119827526 + Missense_Mutation SNP C C T novel Unknown TCGA-59-2350-01 TCGA-59-2350-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 119827526 119827526 ARHGEF12 11 C C T 27 MYF5 4617 broad.mit.edu 36 12 79635167 79635167 + Missense_Mutation SNP G G T novel Unknown TCGA-59-2350-01 TCGA-59-2350-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 79635167 79635167 MYF5 12 G G T 44 LIG4 3981 broad.mit.edu 36 13 107659829 107659829 + Missense_Mutation SNP C C A novel Unknown TCGA-59-2350-01 TCGA-59-2350-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 107659829 107659829 LIG4 13 C C A 30 TCF25 22980 broad.mit.edu 36 16 88505005 88505005 + Missense_Mutation SNP A A C novel Unknown TCGA-59-2350-01 TCGA-59-2350-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 88505005 88505005 TCF25 16 A A C 9 GEMIN4 50628 broad.mit.edu 36 17 597333 597333 + Missense_Mutation SNP C C A novel Unknown TCGA-59-2350-01 TCGA-59-2350-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 597333 597333 GEMIN4 17 C C A 22 TP53 7157 broad.mit.edu 36 17 7518915 7518915 + Missense_Mutation SNP T T C novel Unknown TCGA-59-2350-01 TCGA-59-2350-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 7518915 7518915 TP53 17 T T C 49 CYP4F12 66002 broad.mit.edu 36 19 15655418 15655418 + Missense_Mutation SNP C C T novel Unknown TCGA-59-2350-01 TCGA-59-2350-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 15655418 15655418 CYP4F12 19 C C T 27 OR10H1 26539 broad.mit.edu 36 19 15779448 15779448 + Missense_Mutation SNP C C T novel Unknown TCGA-59-2350-01 TCGA-59-2350-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 15779448 15779448 OR10H1 19 C C T 19 PSG1 5669 broad.mit.edu 36 19 48067793 48067793 + Silent SNP G G T novel Unknown TCGA-59-2350-01 TCGA-59-2350-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 48067793 48067793 PSG1 19 G G T 47 POLD1 5424 broad.mit.edu 36 19 55610877 55610877 + Silent SNP C C T novel Unknown TCGA-59-2350-01 TCGA-59-2350-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 55610877 55610877 POLD1 19 C C T 23 KLF11 8462 broad.mit.edu 36 2 10103874 10103874 + Missense_Mutation SNP A A T novel Unknown TCGA-59-2350-01 TCGA-59-2350-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 10103874 10103874 KLF11 2 A A T 3 POLR1A 25885 broad.mit.edu 36 2 86108586 86108586 + Silent SNP G G A novel Unknown TCGA-59-2350-01 TCGA-59-2350-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 86108586 86108586 POLR1A 2 G G A 36 POTED 317754 broad.mit.edu 36 21 13922643 13922643 + Missense_Mutation SNP A A G novel Unknown TCGA-59-2350-01 TCGA-59-2350-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 13922643 13922643 POTED 21 A A G 11 OTOL1 131149 broad.mit.edu 36 3 162703943 162703943 + Missense_Mutation SNP T T C novel Unknown TCGA-59-2350-01 TCGA-59-2350-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 162703943 162703943 OTOL1 3 T T C 58 POLK 51426 broad.mit.edu 36 5 74884060 74884060 + Missense_Mutation SNP G G T novel Unknown TCGA-59-2350-01 TCGA-59-2350-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 74884060 74884060 POLK 5 G G T 33 REEP5 7905 broad.mit.edu 36 5 112266101 112266101 + Missense_Mutation SNP C C T novel Unknown TCGA-59-2350-01 TCGA-59-2350-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 112266101 112266101 REEP5 5 C C T 32 TGFBI 7045 broad.mit.edu 36 5 135417556 135417556 + Silent SNP A A C novel Unknown TCGA-59-2350-01 TCGA-59-2350-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 135417556 135417556 TGFBI 5 A A C 7 DST 667 broad.mit.edu 36 6 56505186 56505186 + Missense_Mutation SNP C C G novel Unknown TCGA-59-2350-01 TCGA-59-2350-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 56505186 56505186 DST 6 C C G 32 EEPD1 80820 broad.mit.edu 36 7 36161160 36161160 + Silent SNP G G T novel Unknown TCGA-59-2350-01 TCGA-59-2350-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 36161160 36161160 EEPD1 7 G G T 38 SPDYE5 442590 broad.mit.edu 36 7 74962437 74962437 + Missense_Mutation SNP T T C novel Unknown TCGA-59-2350-01 TCGA-59-2350-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 74962437 74962437 SPDYE5 7 T T C 51 C9orf150 286343 broad.mit.edu 36 9 12765880 12765880 + Missense_Mutation SNP T T G novel Unknown TCGA-59-2350-01 TCGA-59-2350-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 12765880 12765880 C9orf150 9 T T G 55 ZCCHC6 79670 broad.mit.edu 36 9 88113952 88113952 + Missense_Mutation SNP C C T novel Unknown TCGA-59-2350-01 TCGA-59-2350-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 88113952 88113952 ZCCHC6 9 C C T 29 CTSL1 1514 broad.mit.edu 36 9 89533497 89533497 + Missense_Mutation SNP G G A novel Unknown TCGA-59-2350-01 TCGA-59-2350-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 89533497 89533497 CTSL1 9 G G A 41 DSE 29940 broad.mit.edu 36 6 116863562 116863566 + Frame_Shift_Del DEL CTTTC - CTTTC novel Unknown TCGA-59-2350-01 TCGA-59-2350-11 Unknown Unknown Unknown Phase_I Capture --- Illumina GAIIx Broad Frame_Shift_Del DEL 116863562 116863566 DSE 6 CTTTC - CTTTC 32 TBP 6908 broad.mit.edu 36 6 170712938 170712939 + In_Frame_Ins INS - CAG - novel Unknown TCGA-59-2350-01 TCGA-59-2350-11 Unknown Unknown Unknown Phase_I Capture --- Illumina GAIIx Broad In_Frame_Ins INS 170712938 170712939 TBP 6 - CAG - 2