Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer dataset type classification start end gene chr ref_allele tum_allele1 tum_allele2 context SETDB1 9869 broad.mit.edu 36 1 149190067 149190067 + Missense_Mutation SNP T T C novel Unknown TCGA-61-1919-01 TCGA-61-1919-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 149190067 149190067 SETDB1 1 T T C 52 OR2B11 127623 broad.mit.edu 36 1 245681128 245681128 + Silent SNP A A T novel Unknown TCGA-61-1919-01 TCGA-61-1919-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 245681128 245681128 OR2B11 1 A A T 1 KCNK18 338567 broad.mit.edu 36 10 118950726 118950726 + Missense_Mutation SNP G G T novel Unknown TCGA-61-1919-01 TCGA-61-1919-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 118950726 118950726 KCNK18 10 G G T 35 AP2A2 161 broad.mit.edu 36 11 984220 984220 + Missense_Mutation SNP C C G novel Unknown TCGA-61-1919-01 TCGA-61-1919-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 984220 984220 AP2A2 11 C C G 24 PAX6 5080 broad.mit.edu 36 11 31772162 31772162 + Silent SNP T T C novel Unknown TCGA-61-1919-01 TCGA-61-1919-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 31772162 31772162 PAX6 11 T T C 62 TRAF6 7189 broad.mit.edu 36 11 36468092 36468092 + Missense_Mutation SNP C C T novel Unknown TCGA-61-1919-01 TCGA-61-1919-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 36468092 36468092 TRAF6 11 C C T 28 AHNAK 79026 broad.mit.edu 36 11 62045707 62045707 + Missense_Mutation SNP T T C novel Unknown TCGA-61-1919-01 TCGA-61-1919-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 62045707 62045707 AHNAK 11 T T C 64 NRXN2 9379 broad.mit.edu 36 11 64209946 64209946 + Silent SNP G G A novel Unknown TCGA-61-1919-01 TCGA-61-1919-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 64209946 64209946 NRXN2 11 G G A 40 WSCD2 9671 broad.mit.edu 36 12 107166130 107166130 + Silent SNP C C T novel Unknown TCGA-61-1919-01 TCGA-61-1919-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 107166130 107166130 WSCD2 12 C C T 31 TUBA3C 7278 broad.mit.edu 36 13 18649364 18649364 + Silent SNP C C T novel Unknown TCGA-61-1919-01 TCGA-61-1919-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 18649364 18649364 TUBA3C 13 C C T 23 OR11G2 390439 broad.mit.edu 36 14 19735929 19735929 + Missense_Mutation SNP G G A novel Unknown TCGA-61-1919-01 TCGA-61-1919-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 19735929 19735929 OR11G2 14 G G A 40 TEP1 7011 broad.mit.edu 36 14 19939105 19939105 + Missense_Mutation SNP C C T novel Unknown TCGA-61-1919-01 TCGA-61-1919-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 19939105 19939105 TEP1 14 C C T 27 ERO1L 30001 broad.mit.edu 36 14 52189733 52189733 + Nonsense_Mutation SNP G G A novel Unknown TCGA-61-1919-01 TCGA-61-1919-11 Unknown Unknown Unknown x x --- x Broad Nonsense_Mutation SNP 52189733 52189733 ERO1L 14 G G A 38 TP53 7157 broad.mit.edu 36 17 7518990 7518990 + Missense_Mutation SNP A A G novel Unknown TCGA-61-1919-01 TCGA-61-1919-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 7518990 7518990 TP53 17 A A G 12 AP2B1 163 broad.mit.edu 36 17 30993078 30993078 + Missense_Mutation SNP G G A novel Unknown TCGA-61-1919-01 TCGA-61-1919-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 30993078 30993078 AP2B1 17 G G A 36 ZNF407 55628 broad.mit.edu 36 18 70475759 70475759 + Missense_Mutation SNP G G A novel Unknown TCGA-61-1919-01 TCGA-61-1919-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 70475759 70475759 ZNF407 18 G G A 40 SLC25A23 79085 broad.mit.edu 36 19 6407446 6407446 + Missense_Mutation SNP G G C novel Unknown TCGA-61-1919-01 TCGA-61-1919-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 6407446 6407446 SLC25A23 19 G G C 33 ZC3H4 23211 broad.mit.edu 36 19 52285109 52285109 + Missense_Mutation SNP G G C novel Unknown TCGA-61-1919-01 TCGA-61-1919-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 52285109 52285109 ZC3H4 19 G G C 34 EHD3 30845 broad.mit.edu 36 2 31337004 31337004 + Missense_Mutation SNP C C A novel Unknown TCGA-61-1919-01 TCGA-61-1919-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 31337004 31337004 EHD3 2 C C A 18 TTN 7273 broad.mit.edu 36 2 179225077 179225077 + Missense_Mutation SNP G G C novel Unknown TCGA-61-1919-01 TCGA-61-1919-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 179225077 179225077 TTN 2 G G C 41 RFPL2 10739 broad.mit.edu 36 22 30916896 30916896 + Missense_Mutation SNP C C T novel Unknown TCGA-61-1919-01 TCGA-61-1919-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 30916896 30916896 RFPL2 22 C C T 19 TRIOBP 11078 broad.mit.edu 36 22 36451808 36451808 + Missense_Mutation SNP C C T novel Unknown TCGA-61-1919-01 TCGA-61-1919-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 36451808 36451808 TRIOBP 22 C C T 30 MAPK12 6300 broad.mit.edu 36 22 49035898 49035898 + Silent SNP C C T novel Unknown TCGA-61-1919-01 TCGA-61-1919-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 49035898 49035898 MAPK12 22 C C T 25 ARSJ 79642 broad.mit.edu 36 4 115043506 115043506 + Silent SNP C C T novel Unknown TCGA-61-1919-01 TCGA-61-1919-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 115043506 115043506 ARSJ 4 C C T 32 STOX2 56977 broad.mit.edu 36 4 185168075 185168075 + Missense_Mutation SNP C C T novel Unknown TCGA-61-1919-01 TCGA-61-1919-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 185168075 185168075 STOX2 4 C C T 31 PAPD7 11044 broad.mit.edu 36 5 6804185 6804185 + Missense_Mutation SNP G G A novel Unknown TCGA-61-1919-01 TCGA-61-1919-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 6804185 6804185 PAPD7 5 G G A 48 RASGRF2 5924 broad.mit.edu 36 5 80399737 80399737 + Missense_Mutation SNP G G A novel Unknown TCGA-61-1919-01 TCGA-61-1919-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 80399737 80399737 RASGRF2 5 G G A 37 APC 324 broad.mit.edu 36 5 112204836 112204836 + Missense_Mutation SNP A A T novel Unknown TCGA-61-1919-01 TCGA-61-1919-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 112204836 112204836 APC 5 A A T 9 PCDHB11 56125 broad.mit.edu 36 5 140560913 140560913 + Missense_Mutation SNP G G A novel Unknown TCGA-61-1919-01 TCGA-61-1919-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 140560913 140560913 PCDHB11 5 G G A 38 PKHD1 5314 broad.mit.edu 36 6 52049080 52049080 + Missense_Mutation SNP G G A novel Unknown TCGA-61-1919-01 TCGA-61-1919-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 52049080 52049080 PKHD1 6 G G A 38 LTV1 84946 broad.mit.edu 36 6 144208937 144208937 + Silent SNP C C T novel Unknown TCGA-61-1919-01 TCGA-61-1919-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 144208937 144208937 LTV1 6 C C T 19 LAMB1 3912 broad.mit.edu 36 7 107403508 107403508 + Missense_Mutation SNP A A G novel Unknown TCGA-61-1919-01 TCGA-61-1919-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 107403508 107403508 LAMB1 7 A A G 13 CFTR 1080 broad.mit.edu 36 7 116969347 116969347 + Missense_Mutation SNP C C G novel Unknown TCGA-61-1919-01 TCGA-61-1919-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 116969347 116969347 CFTR 7 C C G 20 NUP205 23165 broad.mit.edu 36 7 134938258 134938258 + Missense_Mutation SNP C C T novel Unknown TCGA-61-1919-01 TCGA-61-1919-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 134938258 134938258 NUP205 7 C C T 25 TMEM139 135932 broad.mit.edu 36 7 142693871 142693871 + Missense_Mutation SNP C C G novel Unknown TCGA-61-1919-01 TCGA-61-1919-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 142693871 142693871 TMEM139 7 C C G 30 EPHA1 2041 broad.mit.edu 36 7 142808686 142808686 + Silent SNP G G A novel Unknown TCGA-61-1919-01 TCGA-61-1919-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 142808686 142808686 EPHA1 7 G G A 41 GPR173 54328 broad.mit.edu 36 X 53122815 53122815 + Missense_Mutation SNP G G T novel Unknown TCGA-61-1919-01 TCGA-61-1919-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 53122815 53122815 GPR173 23 G G T 46 ABCB7 22 broad.mit.edu 36 X 74211977 74211977 + Missense_Mutation SNP A A G novel Unknown TCGA-61-1919-01 TCGA-61-1919-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 74211977 74211977 ABCB7 23 A A G 5 KNTC1 9735 broad.mit.edu 36 12 121655545 121655548 + Frame_Shift_Del DEL ATCA - ATCA novel Unknown TCGA-61-1919-01 TCGA-61-1919-11 Unknown Unknown Unknown Phase_I Capture --- Illumina GAIIx Broad Frame_Shift_Del DEL 121655545 121655548 KNTC1 12 ATCA - ATCA 8