Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer dataset type classification start end gene chr ref_allele tum_allele1 tum_allele2 context UBXN11 91544 broad.mit.edu 36 1 26483246 26483246 + Missense_Mutation SNP G G A novel Unknown TCGA-61-1995-01 TCGA-61-1995-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 26483246 26483246 UBXN11 1 G G A 39 ITIH2 3698 broad.mit.edu 36 10 7787105 7787105 + Missense_Mutation SNP T T A novel Unknown TCGA-61-1995-01 TCGA-61-1995-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 7787105 7787105 ITIH2 10 T T A 55 SEC61A2 55176 broad.mit.edu 36 10 12239969 12239969 + Missense_Mutation SNP C C G novel Unknown TCGA-61-1995-01 TCGA-61-1995-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 12239969 12239969 SEC61A2 10 C C G 28 PBLD 64081 broad.mit.edu 36 10 69721950 69721950 + Missense_Mutation SNP G G T novel Unknown TCGA-61-1995-01 TCGA-61-1995-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 69721950 69721950 PBLD 10 G G T 42 PCDH8 5100 broad.mit.edu 36 13 52318357 52318357 + Missense_Mutation SNP A A C novel Unknown TCGA-61-1995-01 TCGA-61-1995-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 52318357 52318357 PCDH8 13 A A C 6 KCTD12 115207 broad.mit.edu 36 13 76357361 76357361 + Missense_Mutation SNP C C A novel Unknown TCGA-61-1995-01 TCGA-61-1995-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 76357361 76357361 KCTD12 13 C C A 32 HSP90AA1 3320 broad.mit.edu 36 14 101621436 101621436 + Missense_Mutation SNP C C G novel Unknown TCGA-61-1995-01 TCGA-61-1995-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 101621436 101621436 HSP90AA1 14 C C G 32 TGM7 116179 broad.mit.edu 36 15 41358697 41358697 + Silent SNP G G A novel Unknown TCGA-61-1995-01 TCGA-61-1995-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 41358697 41358697 TGM7 15 G G A 38 TP53 7157 broad.mit.edu 36 17 7518293 7518293 + Missense_Mutation SNP C C T novel Unknown TCGA-61-1995-01 TCGA-61-1995-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 7518293 7518293 TP53 17 C C T 17 SYNRG 11276 broad.mit.edu 36 17 32987861 32987861 + Missense_Mutation SNP C C T novel Unknown TCGA-61-1995-01 TCGA-61-1995-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 32987861 32987861 SYNRG 17 C C T 32 PPAN 56342 broad.mit.edu 36 19 10079794 10079794 + Missense_Mutation SNP C C T novel Unknown TCGA-61-1995-01 TCGA-61-1995-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 10079794 10079794 PPAN 19 C C T 30 ZNF260 339324 broad.mit.edu 36 19 41697727 41697727 + Missense_Mutation SNP C C A novel Unknown TCGA-61-1995-01 TCGA-61-1995-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 41697727 41697727 ZNF260 19 C C A 17 ZNF548 147694 broad.mit.edu 36 19 62602772 62602772 + Silent SNP C C T novel Unknown TCGA-61-1995-01 TCGA-61-1995-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 62602772 62602772 ZNF548 19 C C T 18 EIF2AK3 9451 broad.mit.edu 36 2 88671522 88671522 + Missense_Mutation SNP T T G novel Unknown TCGA-61-1995-01 TCGA-61-1995-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 88671522 88671522 EIF2AK3 2 T T G 64 GTF3C3 9330 broad.mit.edu 36 2 197372488 197372488 + Silent SNP G G C novel Unknown TCGA-61-1995-01 TCGA-61-1995-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 197372488 197372488 GTF3C3 2 G G C 38 CXCR7 57007 broad.mit.edu 36 2 237154268 237154268 + Missense_Mutation SNP G G T novel Unknown TCGA-61-1995-01 TCGA-61-1995-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 237154268 237154268 CXCR7 2 G G T 41 ANKMY1 51281 broad.mit.edu 36 2 241141048 241141049 + Missense_Mutation DNP GG GG TT novel Unknown TCGA-61-1995-01 TCGA-61-1995-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation DNP 241141048 241141049 ANKMY1 2 GG GG TT 39 CDC25B 994 broad.mit.edu 36 20 3729936 3729936 + Missense_Mutation SNP G G T novel Unknown TCGA-61-1995-01 TCGA-61-1995-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 3729936 3729936 CDC25B 20 G G T 34 CHD6 84181 broad.mit.edu 36 20 39553869 39553869 + Missense_Mutation SNP C C T novel Unknown TCGA-61-1995-01 TCGA-61-1995-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 39553869 39553869 CHD6 20 C C T 23 PCDHA13 56136 broad.mit.edu 36 5 140244061 140244061 + Missense_Mutation SNP C C T novel Unknown TCGA-61-1995-01 TCGA-61-1995-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 140244061 140244061 PCDHA13 5 C C T 27 FKBP9 11328 broad.mit.edu 36 7 32963838 32963838 + Missense_Mutation SNP T T C novel Unknown TCGA-61-1995-01 TCGA-61-1995-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 32963838 32963838 FKBP9 7 T T C 59 MLL3 58508 broad.mit.edu 36 7 151476828 151476828 + Missense_Mutation SNP G G C novel Unknown TCGA-61-1995-01 TCGA-61-1995-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 151476828 151476828 MLL3 7 G G C 44 CSMD3 114788 broad.mit.edu 36 8 113373014 113373014 + Missense_Mutation SNP C C A novel Unknown TCGA-61-1995-01 TCGA-61-1995-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 113373014 113373014 CSMD3 8 C C A 18 SLC45A4 57210 broad.mit.edu 36 8 142297552 142297552 + Missense_Mutation SNP C C T novel Unknown TCGA-61-1995-01 TCGA-61-1995-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 142297552 142297552 SLC45A4 8 C C T 31 PRUNE2 158471 broad.mit.edu 36 9 78510558 78510558 + Missense_Mutation SNP C C T novel Unknown TCGA-61-1995-01 TCGA-61-1995-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 78510558 78510558 PRUNE2 9 C C T 23 USP9X 8239 broad.mit.edu 36 X 40960499 40960499 + Missense_Mutation SNP A A G novel Unknown TCGA-61-1995-01 TCGA-61-1995-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 40960499 40960499 USP9X 23 A A G 12 TEX13A 56157 broad.mit.edu 36 X 104351508 104351508 + Missense_Mutation SNP C C T novel Unknown TCGA-61-1995-01 TCGA-61-1995-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 104351508 104351508 TEX13A 23 C C T 27