Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	dataset	type	classification	start	end	gene	chr	ref_allele	tum_allele1	tum_allele2	context
SLC9A1	6548	broad.mit.edu	36	1	27305134	27305134	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-61-2110-01	TCGA-61-2110-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	27305134	27305134	SLC9A1	1	C	C	T	20
FLG2	388698	broad.mit.edu	36	1	150590679	150590679	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-61-2110-01	TCGA-61-2110-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	150590679	150590679	FLG2	1	G	G	A	40
PAQR6	79957	broad.mit.edu	36	1	154481219	154481219	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-61-2110-01	TCGA-61-2110-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	154481219	154481219	PAQR6	1	G	G	A	43
RCSD1	92241	broad.mit.edu	36	1	165933274	165933274	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-61-2110-01	TCGA-61-2110-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	165933274	165933274	RCSD1	1	G	G	T	35
HMCN1	83872	broad.mit.edu	36	1	184350680	184350680	+	Nonsense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-2110-01	TCGA-61-2110-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Nonsense_Mutation	SNP	184350680	184350680	HMCN1	1	C	C	T	27
JMJD4	65094	broad.mit.edu	36	1	225987948	225987948	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-61-2110-01	TCGA-61-2110-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	225987948	225987948	JMJD4	1	C	C	G	30
OBSCN	84033	broad.mit.edu	36	1	226466919	226466919	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-2110-01	TCGA-61-2110-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Nonsense_Mutation	SNP	226466919	226466919	OBSCN	1	G	G	A	47
PLD5	200150	broad.mit.edu	36	1	240450028	240450028	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-2110-01	TCGA-61-2110-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	240450028	240450028	PLD5	1	G	G	A	40
KIAA1217	56243	broad.mit.edu	36	10	24802856	24802856	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-2110-01	TCGA-61-2110-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	24802856	24802856	KIAA1217	10	G	G	A	41
ARMC4	55130	broad.mit.edu	36	10	28273346	28273346	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-61-2110-01	TCGA-61-2110-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	28273346	28273346	ARMC4	10	C	C	A	29
COL17A1	1308	broad.mit.edu	36	10	105809882	105809882	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-2110-01	TCGA-61-2110-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	105809882	105809882	COL17A1	10	C	C	T	25
DOCK1	1793	broad.mit.edu	36	10	129097358	129097359	+	Missense_Mutation	DNP	CT	CT	AG	novel	Unknown	TCGA-61-2110-01	TCGA-61-2110-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	DNP	129097358	129097359	DOCK1	10	CT	CT	AG	20
CNTN5	53942	broad.mit.edu	36	11	99600728	99600728	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-61-2110-01	TCGA-61-2110-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Nonsense_Mutation	SNP	99600728	99600728	CNTN5	11	C	C	A	29
TBC1D4	9882	broad.mit.edu	36	13	74767050	74767050	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-2110-01	TCGA-61-2110-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	74767050	74767050	TBC1D4	13	G	G	A	43
RASA3	22821	broad.mit.edu	36	13	113769356	113769356	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-61-2110-01	TCGA-61-2110-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	113769356	113769356	RASA3	13	T	T	G	64
TEP1	7011	broad.mit.edu	36	14	19933904	19933904	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-61-2110-01	TCGA-61-2110-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	19933904	19933904	TEP1	14	G	G	A	40
KHNYN	23351	broad.mit.edu	36	14	23970921	23970921	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-2110-01	TCGA-61-2110-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	23970921	23970921	KHNYN	14	C	C	T	25
AGBL1	123624	broad.mit.edu	36	15	85018599	85018599	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-2110-01	TCGA-61-2110-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	85018599	85018599	AGBL1	15	G	G	A	34
ZNF785	146540	broad.mit.edu	36	16	30501512	30501512	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-2110-01	TCGA-61-2110-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	30501512	30501512	ZNF785	16	C	C	T	27
MYBBP1A	10514	broad.mit.edu	36	17	4400238	4400238	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-61-2110-01	TCGA-61-2110-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	4400238	4400238	MYBBP1A	17	C	C	G	19
TP53	7157	broad.mit.edu	36	17	7519275	7519275	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-61-2110-01	TCGA-61-2110-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	7519275	7519275	TP53	17	G	G	T	41
uc002igz.2	284071	broad.mit.edu	36	17	40100926	40100926	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-61-2110-01	TCGA-61-2110-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	40100926	40100926	uc002igz.2	17	T	T	C	51
THOP1	7064	broad.mit.edu	36	19	2750759	2750759	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-61-2110-01	TCGA-61-2110-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	2750759	2750759	THOP1	19	A	A	C	10
MYT1L	23040	broad.mit.edu	36	2	1885923	1885923	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-61-2110-01	TCGA-61-2110-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	1885923	1885923	MYT1L	2	A	A	G	8
ANKRD57	65124	broad.mit.edu	36	2	109730229	109730229	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-2110-01	TCGA-61-2110-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	109730229	109730229	ANKRD57	2	G	G	A	39
TTN	7273	broad.mit.edu	36	2	179148864	179148864	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-61-2110-01	TCGA-61-2110-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	179148864	179148864	TTN	2	A	A	G	10
FAM124B	79843	broad.mit.edu	36	2	224974366	224974366	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-2110-01	TCGA-61-2110-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Nonsense_Mutation	SNP	224974366	224974366	FAM124B	2	G	G	A	45
PER2	8864	broad.mit.edu	36	2	238834268	238834268	+	Silent	SNP	A	A	C	novel	Unknown	TCGA-61-2110-01	TCGA-61-2110-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	238834268	238834268	PER2	2	A	A	C	13
C20orf118	140711	broad.mit.edu	36	20	34940984	34940984	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-61-2110-01	TCGA-61-2110-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	34940984	34940984	C20orf118	20	C	C	T	28
PREX1	57580	broad.mit.edu	36	20	46738641	46738641	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-2110-01	TCGA-61-2110-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	46738641	46738641	PREX1	20	C	C	T	23
HIRA	7290	broad.mit.edu	36	22	17720961	17720961	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-61-2110-01	TCGA-61-2110-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	17720961	17720961	HIRA	22	C	C	A	24
TTLL12	23170	broad.mit.edu	36	22	41900461	41900461	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-61-2110-01	TCGA-61-2110-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	41900461	41900461	TTLL12	22	A	A	C	9
SNRK	54861	broad.mit.edu	36	3	43364243	43364243	+	Silent	SNP	C	C	T	rs2036617	byCluster;byFrequency;by2Hit2Allele;byHapMap	TCGA-61-2110-01	TCGA-61-2110-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	43364243	43364243	SNRK	3	C	C	T	19
MON1A	84315	broad.mit.edu	36	3	49924412	49924412	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-2110-01	TCGA-61-2110-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	49924412	49924412	MON1A	3	C	C	T	19
SUCNR1	56670	broad.mit.edu	36	3	153081999	153081999	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-61-2110-01	TCGA-61-2110-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	153081999	153081999	SUCNR1	3	A	A	T	2
HSD17B11	51170	broad.mit.edu	36	4	88480763	88480763	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-2110-01	TCGA-61-2110-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	88480763	88480763	HSD17B11	4	G	G	A	44
EXOC3	11336	broad.mit.edu	36	5	507157	507157	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-61-2110-01	TCGA-61-2110-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	507157	507157	EXOC3	5	C	C	A	18
C7	730	broad.mit.edu	36	5	41012639	41012639	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-2110-01	TCGA-61-2110-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	41012639	41012639	C7	5	G	G	A	48
PCDHA4	56144	broad.mit.edu	36	5	140168448	140168448	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-2110-01	TCGA-61-2110-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	140168448	140168448	PCDHA4	5	C	C	T	27
GRM6	2916	broad.mit.edu	36	5	178346490	178346490	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-61-2110-01	TCGA-61-2110-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	178346490	178346490	GRM6	5	G	G	A	38
SLC44A4	80736	broad.mit.edu	36	6	31939439	31939439	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-61-2110-01	TCGA-61-2110-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	31939439	31939439	SLC44A4	6	T	T	C	64
UTRN	7402	broad.mit.edu	36	6	145199306	145199306	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-61-2110-01	TCGA-61-2110-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	145199306	145199306	UTRN	6	T	T	C	52
HECW1	23072	broad.mit.edu	36	7	43556662	43556662	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-2110-01	TCGA-61-2110-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	43556662	43556662	HECW1	7	G	G	A	44
C7orf65	401335	broad.mit.edu	36	7	47661472	47661472	+	Splice_Site_SNP	SNP	G	G	C	novel	Unknown	TCGA-61-2110-01	TCGA-61-2110-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Splice_Site_SNP	SNP	47661472	47661472	C7orf65	7	G	G	C	44
SLC20A2	6575	broad.mit.edu	36	8	42394594	42394594	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-2110-01	TCGA-61-2110-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	42394594	42394594	SLC20A2	8	C	C	T	30
OR1L4	254973	broad.mit.edu	36	9	124526336	124526336	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-61-2110-01	TCGA-61-2110-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	124526336	124526336	OR1L4	9	C	C	G	28
SHROOM2	357	broad.mit.edu	36	X	9860829	9860829	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-2110-01	TCGA-61-2110-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	9860829	9860829	SHROOM2	23	C	C	T	31
WWC3	55841	broad.mit.edu	36	X	10056631	10056631	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-2110-01	TCGA-61-2110-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	10056631	10056631	WWC3	23	C	C	T	25
DMD	1756	broad.mit.edu	36	X	32292660	32292660	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-2110-01	TCGA-61-2110-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	32292660	32292660	DMD	23	G	G	A	45
FAM47A	158724	broad.mit.edu	36	X	34058180	34058180	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-61-2110-01	TCGA-61-2110-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	34058180	34058180	FAM47A	23	G	G	T	44
AWAT1	158833	broad.mit.edu	36	X	69376745	69376745	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-61-2110-01	TCGA-61-2110-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	69376745	69376745	AWAT1	23	G	G	T	34
SASH3	54440	broad.mit.edu	36	X	128754653	128754653	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-2110-01	TCGA-61-2110-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	128754653	128754653	SASH3	23	C	C	T	17
ZNF185	7739	broad.mit.edu	36	X	151864628	151864628	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-61-2110-01	TCGA-61-2110-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	151864628	151864628	ZNF185	23	C	C	A	32