Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID EVPL 2125 hgsc.bcm.edu 36 17 71515272 71515273 + Frame_Shift_Ins INS - - CC novel TCGA-09-1662-01A-01W-0615-10 TCGA-09-1662-10A-01W-0616-10 - - . . . . Unknown Untested Somatic Phase_III WXS none SOLID fd0c309f-78d4-4d6f-a280-aa95ea387d1c b3ef1c80-567c-4552-a0a7-42d71b70e52d HEATR1 55127 hgsc.bcm.edu 36 1 234817932 234817932 + Missense_Mutation SNP A A T novel TCGA-09-1662-01A-01W-0615-10 TCGA-09-1662-10A-01W-0616-10 A A . . . . Unknown Untested Somatic Phase_III WXS none SOLID fd0c309f-78d4-4d6f-a280-aa95ea387d1c b3ef1c80-567c-4552-a0a7-42d71b70e52d MTDH 92140 hgsc.bcm.edu 36 8 98800510 98800510 + Missense_Mutation SNP A A G novel TCGA-09-1662-01A-01W-0615-10 TCGA-09-1662-10A-01W-0616-10 A A . . . . Unknown Untested Somatic Phase_III WXS none SOLID fd0c309f-78d4-4d6f-a280-aa95ea387d1c b3ef1c80-567c-4552-a0a7-42d71b70e52d PRKD3 23683 hgsc.bcm.edu 36 2 37334916 37334916 + Missense_Mutation SNP G G T novel TCGA-09-1662-01A-01W-0615-10 TCGA-09-1662-10A-01W-0616-10 G G . . . . Unknown Untested Somatic Phase_III WXS none SOLID fd0c309f-78d4-4d6f-a280-aa95ea387d1c b3ef1c80-567c-4552-a0a7-42d71b70e52d S100A10 6281 hgsc.bcm.edu 36 1 150222273 150222273 + Missense_Mutation SNP C C T novel TCGA-09-1662-01A-01W-0615-10 TCGA-09-1662-10A-01W-0616-10 C C . . . . Unknown Untested Somatic Phase_III WXS none SOLID fd0c309f-78d4-4d6f-a280-aa95ea387d1c b3ef1c80-567c-4552-a0a7-42d71b70e52d ZC3HAV1 56829 hgsc.bcm.edu 36 7 138383002 138383002 + Nonsense_Mutation SNP G G A novel TCGA-09-1662-01A-01W-0615-10 TCGA-09-1662-10A-01W-0616-10 G G . . . . Unknown Untested Somatic Phase_III WXS none SOLID fd0c309f-78d4-4d6f-a280-aa95ea387d1c b3ef1c80-567c-4552-a0a7-42d71b70e52d ABCG8 64241 hgsc.bcm.edu 36 2 43926872 43926872 + Silent SNP C C T novel TCGA-09-1662-01A-01W-0615-10 TCGA-09-1662-10A-01W-0616-10 C C C T C C Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID fd0c309f-78d4-4d6f-a280-aa95ea387d1c b3ef1c80-567c-4552-a0a7-42d71b70e52d C18orf34 374864 hgsc.bcm.edu 36 18 29157491 29157491 + Missense_Mutation SNP C C A novel TCGA-09-1662-01A-01W-0615-10 TCGA-09-1662-10A-01W-0616-10 C C C A C C Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID fd0c309f-78d4-4d6f-a280-aa95ea387d1c b3ef1c80-567c-4552-a0a7-42d71b70e52d CACNA1D 776 hgsc.bcm.edu 36 3 53785084 53785084 + Missense_Mutation SNP T T G novel TCGA-09-1662-01A-01W-0615-10 TCGA-09-1662-10A-01W-0616-10 T T T G T T Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID fd0c309f-78d4-4d6f-a280-aa95ea387d1c b3ef1c80-567c-4552-a0a7-42d71b70e52d CYP1A2 1544 hgsc.bcm.edu 36 15 72829288 72829288 + Silent SNP G G A novel TCGA-09-1662-01A-01W-0615-10 TCGA-09-1662-10A-01W-0616-10 G G G A G G Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID fd0c309f-78d4-4d6f-a280-aa95ea387d1c b3ef1c80-567c-4552-a0a7-42d71b70e52d EPB41L5 57669 hgsc.bcm.edu 36 2 120493254 120493254 + Missense_Mutation SNP A A G novel TCGA-09-1662-01A-01W-0615-10 TCGA-09-1662-10A-01W-0616-10 A A A G A A Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID fd0c309f-78d4-4d6f-a280-aa95ea387d1c b3ef1c80-567c-4552-a0a7-42d71b70e52d GTF2H4 2968 hgsc.bcm.edu 36 6 30987899 30987899 + Missense_Mutation SNP A A G novel TCGA-09-1662-01A-01W-0615-10 TCGA-09-1662-10A-01W-0616-10 A A A G A A Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID fd0c309f-78d4-4d6f-a280-aa95ea387d1c b3ef1c80-567c-4552-a0a7-42d71b70e52d IL1F10 84639 hgsc.bcm.edu 36 2 113548448 113548448 + Missense_Mutation SNP A A T novel TCGA-09-1662-01A-01W-0615-10 TCGA-09-1662-10A-01W-0616-10 A A A T A A Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID fd0c309f-78d4-4d6f-a280-aa95ea387d1c b3ef1c80-567c-4552-a0a7-42d71b70e52d OR8D1 283159 hgsc.bcm.edu 36 11 123685530 123685530 + Missense_Mutation SNP G G C novel TCGA-09-1662-01A-01W-0615-10 TCGA-09-1662-10A-01W-0616-10 G G G C G G Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID fd0c309f-78d4-4d6f-a280-aa95ea387d1c b3ef1c80-567c-4552-a0a7-42d71b70e52d PGF 5228 hgsc.bcm.edu 36 14 74479185 74479185 + Missense_Mutation SNP C C T novel TCGA-09-1662-01A-01W-0615-10 TCGA-09-1662-10A-01W-0616-10 C C C T C C Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID fd0c309f-78d4-4d6f-a280-aa95ea387d1c b3ef1c80-567c-4552-a0a7-42d71b70e52d POP7 10248 hgsc.bcm.edu 36 7 100142479 100142479 + Silent SNP G G A novel TCGA-09-1662-01A-01W-0615-10 TCGA-09-1662-10A-01W-0616-10 G G G A G G Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID fd0c309f-78d4-4d6f-a280-aa95ea387d1c b3ef1c80-567c-4552-a0a7-42d71b70e52d SACM1L 22908 hgsc.bcm.edu 36 3 45726053 45726053 + Silent SNP T T C novel TCGA-09-1662-01A-01W-0615-10 TCGA-09-1662-10A-01W-0616-10 T T T C T T Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID fd0c309f-78d4-4d6f-a280-aa95ea387d1c b3ef1c80-567c-4552-a0a7-42d71b70e52d SEC14L1 6397 hgsc.bcm.edu 36 17 72702455 72702455 + Silent SNP A A G novel TCGA-09-1662-01A-01W-0615-10 TCGA-09-1662-10A-01W-0616-10 A A A G A A Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID fd0c309f-78d4-4d6f-a280-aa95ea387d1c b3ef1c80-567c-4552-a0a7-42d71b70e52d SLC2A8 29988 hgsc.bcm.edu 36 9 129202018 129202018 + Silent SNP C C G novel TCGA-09-1662-01A-01W-0615-10 TCGA-09-1662-10A-01W-0616-10 C C C G C C Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID fd0c309f-78d4-4d6f-a280-aa95ea387d1c b3ef1c80-567c-4552-a0a7-42d71b70e52d SPANXN3 139067 hgsc.bcm.edu 36 X 142424465 142424465 + Missense_Mutation SNP A A T novel TCGA-09-1662-01A-01W-0615-10 TCGA-09-1662-10A-01W-0616-10 A A A T A A Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID fd0c309f-78d4-4d6f-a280-aa95ea387d1c b3ef1c80-567c-4552-a0a7-42d71b70e52d TP53 7157 hgsc.bcm.edu 36 17 7519128 7519128 + Missense_Mutation SNP C C T novel TCGA-09-1662-01A-01W-0615-10 TCGA-09-1662-10A-01W-0616-10 C C C T C C Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID fd0c309f-78d4-4d6f-a280-aa95ea387d1c b3ef1c80-567c-4552-a0a7-42d71b70e52d C3AR1 719 hgsc.bcm.edu 36 12 8103788 8103788 + Silent SNP C C T novel TCGA-09-1662-01A-01W-0615-10 TCGA-09-1662-10A-01W-0616-10 C C C T C C Unknown Valid Somatic Phase_III WXS Sanger_PCR_WGA SOLID fd0c309f-78d4-4d6f-a280-aa95ea387d1c b3ef1c80-567c-4552-a0a7-42d71b70e52d CHD2 1106 hgsc.bcm.edu 36 15 91300692 91300692 + Splice_Site SNP G G C novel TCGA-09-1662-01A-01W-0615-10 TCGA-09-1662-10A-01W-0616-10 G G G C G G Unknown Valid Somatic Phase_III WXS Sanger_PCR_WGA SOLID fd0c309f-78d4-4d6f-a280-aa95ea387d1c b3ef1c80-567c-4552-a0a7-42d71b70e52d ENPP2 5168 hgsc.bcm.edu 36 8 120665457 120665457 + Missense_Mutation SNP C C T novel TCGA-09-1662-01A-01W-0615-10 TCGA-09-1662-10A-01W-0616-10 C C C T C C Unknown Valid Somatic Phase_III WXS Sanger_PCR_WGA SOLID fd0c309f-78d4-4d6f-a280-aa95ea387d1c b3ef1c80-567c-4552-a0a7-42d71b70e52d KRIT1 889 hgsc.bcm.edu 36 7 91703779 91703779 + Nonsense_Mutation SNP G G T novel TCGA-09-1662-01A-01W-0615-10 TCGA-09-1662-10A-01W-0616-10 G G G T G G Unknown Valid Somatic Phase_III WXS Sanger_PCR_WGA SOLID fd0c309f-78d4-4d6f-a280-aa95ea387d1c b3ef1c80-567c-4552-a0a7-42d71b70e52d LRP2 4036 hgsc.bcm.edu 36 2 169693767 169693767 + Splice_Site SNP A A T novel TCGA-09-1662-01A-01W-0615-10 TCGA-09-1662-10A-01W-0616-10 A A A T A A Unknown Valid Somatic Phase_III WXS Sanger_PCR_WGA SOLID fd0c309f-78d4-4d6f-a280-aa95ea387d1c b3ef1c80-567c-4552-a0a7-42d71b70e52d LRRC7 57554 hgsc.bcm.edu 36 1 70274878 70274878 + Missense_Mutation SNP T T G novel TCGA-09-1662-01A-01W-0615-10 TCGA-09-1662-10A-01W-0616-10 T T T G T T Unknown Valid Somatic Phase_III WXS Sanger_PCR_WGA SOLID fd0c309f-78d4-4d6f-a280-aa95ea387d1c b3ef1c80-567c-4552-a0a7-42d71b70e52d MAP3K4 4216 hgsc.bcm.edu 36 6 161390741 161390741 + Missense_Mutation SNP G G T novel TCGA-09-1662-01A-01W-0615-10 TCGA-09-1662-10A-01W-0616-10 G G G T G G Unknown Valid Somatic Phase_III WXS Sanger_PCR_WGA SOLID fd0c309f-78d4-4d6f-a280-aa95ea387d1c b3ef1c80-567c-4552-a0a7-42d71b70e52d MKI67 4288 hgsc.bcm.edu 36 10 129793291 129793291 + Missense_Mutation SNP G G T novel TCGA-09-1662-01A-01W-0615-10 TCGA-09-1662-10A-01W-0616-10 G G G T G G Unknown Valid Somatic Phase_III WXS Sanger_PCR_WGA SOLID fd0c309f-78d4-4d6f-a280-aa95ea387d1c b3ef1c80-567c-4552-a0a7-42d71b70e52d PAPPA 5069 hgsc.bcm.edu 36 9 117990026 117990026 + Missense_Mutation SNP C C A novel TCGA-09-1662-01A-01W-0615-10 TCGA-09-1662-10A-01W-0616-10 C C C A C C Unknown Valid Somatic Phase_III WXS Sanger_PCR_WGA SOLID fd0c309f-78d4-4d6f-a280-aa95ea387d1c b3ef1c80-567c-4552-a0a7-42d71b70e52d SERPINA12 145264 hgsc.bcm.edu 36 14 94034154 94034154 + Missense_Mutation SNP G G T novel TCGA-09-1662-01A-01W-0615-10 TCGA-09-1662-10A-01W-0616-10 G G G T G G Unknown Valid Somatic Phase_III WXS Sanger_PCR_WGA SOLID fd0c309f-78d4-4d6f-a280-aa95ea387d1c b3ef1c80-567c-4552-a0a7-42d71b70e52d TACC2 10579 hgsc.bcm.edu 36 10 123978986 123978986 + Missense_Mutation SNP C C T novel TCGA-09-1662-01A-01W-0615-10 TCGA-09-1662-10A-01W-0616-10 C C C T C C Unknown Valid Somatic Phase_III WXS Sanger_PCR_WGA SOLID fd0c309f-78d4-4d6f-a280-aa95ea387d1c b3ef1c80-567c-4552-a0a7-42d71b70e52d TYRO3 7301 hgsc.bcm.edu 36 15 39644530 39644530 + Missense_Mutation SNP C C T novel TCGA-09-1662-01A-01W-0615-10 TCGA-09-1662-10A-01W-0616-10 C C C T C C Unknown Valid Somatic Phase_III WXS Sanger_PCR_WGA SOLID fd0c309f-78d4-4d6f-a280-aa95ea387d1c b3ef1c80-567c-4552-a0a7-42d71b70e52d DNAH3 55567 hgsc.bcm.edu 36 16 20888755 20888755 + Missense_Mutation SNP G G A novel TCGA-09-1662-01A-01W-0615-10 TCGA-09-1662-10A-01W-0616-10 G G G A G G Unknown Valid Somatic Phase_III WXS Sanger_PCR_WGA SOLID fd0c309f-78d4-4d6f-a280-aa95ea387d1c b3ef1c80-567c-4552-a0a7-42d71b70e52d