Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ERBB2 2064 hgsc.bcm.edu 36 17 35135143 35135143 + Missense_Mutation SNP G G A novel TCGA-09-1665-01B-01W-0615-10 TCGA-09-1665-11B-01W-0616-10 G G . . . . Unknown Untested Somatic Phase_III WXS none SOLID 6fc8fb51-b955-4c2b-afad-0175835e70d1 0bb49442-38ba-4eb0-8eda-780255c19045 KDM3B 51780 hgsc.bcm.edu 36 5 137736317 137736317 + Missense_Mutation SNP A A G novel TCGA-09-1665-01B-01W-0615-10 TCGA-09-1665-11B-01W-0616-10 A A . . . . Unknown Untested Somatic Phase_III WXS none SOLID 6fc8fb51-b955-4c2b-afad-0175835e70d1 0bb49442-38ba-4eb0-8eda-780255c19045 KTN1 3895 hgsc.bcm.edu 36 14 55173781 55173781 + Missense_Mutation SNP G G A novel TCGA-09-1665-01B-01W-0615-10 TCGA-09-1665-11B-01W-0616-10 G G . . . . Unknown Untested Somatic Phase_III WXS none SOLID 6fc8fb51-b955-4c2b-afad-0175835e70d1 0bb49442-38ba-4eb0-8eda-780255c19045 MARK4 57787 hgsc.bcm.edu 36 19 50475785 50475785 + Missense_Mutation SNP G G A novel TCGA-09-1665-01B-01W-0615-10 TCGA-09-1665-11B-01W-0616-10 G G . . . . Unknown Untested Somatic Phase_III WXS none SOLID 6fc8fb51-b955-4c2b-afad-0175835e70d1 0bb49442-38ba-4eb0-8eda-780255c19045 MYBL2 4605 hgsc.bcm.edu 36 20 41777255 41777255 + Missense_Mutation SNP T T C novel TCGA-09-1665-01B-01W-0615-10 TCGA-09-1665-11B-01W-0616-10 T T . . . . Unknown Untested Somatic Phase_III WXS none SOLID 6fc8fb51-b955-4c2b-afad-0175835e70d1 0bb49442-38ba-4eb0-8eda-780255c19045 PDE4DIP 9659 hgsc.bcm.edu 36 1 143617840 143617840 + Missense_Mutation SNP C C A novel TCGA-09-1665-01B-01W-0615-10 TCGA-09-1665-11B-01W-0616-10 C C . . . . Unknown Untested Somatic Phase_III WXS none SOLID 6fc8fb51-b955-4c2b-afad-0175835e70d1 0bb49442-38ba-4eb0-8eda-780255c19045 PDE8B 8622 hgsc.bcm.edu 36 5 76657161 76657161 + Silent SNP C C A novel TCGA-09-1665-01B-01W-0615-10 TCGA-09-1665-11B-01W-0616-10 C C . . . . Unknown Untested Somatic Phase_III WXS none SOLID 6fc8fb51-b955-4c2b-afad-0175835e70d1 0bb49442-38ba-4eb0-8eda-780255c19045 POLM 27434 hgsc.bcm.edu 36 7 44084929 44084929 + Missense_Mutation SNP G G C novel TCGA-09-1665-01B-01W-0615-10 TCGA-09-1665-11B-01W-0616-10 G G . . . . Unknown Untested Somatic Phase_III WXS none SOLID 6fc8fb51-b955-4c2b-afad-0175835e70d1 0bb49442-38ba-4eb0-8eda-780255c19045 RB1 5925 hgsc.bcm.edu 36 13 47835024 47835024 + Missense_Mutation SNP C C T novel TCGA-09-1665-01B-01W-0615-10 TCGA-09-1665-11B-01W-0616-10 C C . . . . Unknown Untested Somatic Phase_III WXS none SOLID 6fc8fb51-b955-4c2b-afad-0175835e70d1 0bb49442-38ba-4eb0-8eda-780255c19045 ROS1 6098 hgsc.bcm.edu 36 6 117831043 117831043 + Nonsense_Mutation SNP G G A novel TCGA-09-1665-01B-01W-0615-10 TCGA-09-1665-11B-01W-0616-10 G G . . . . Unknown Untested Somatic Phase_III WXS none SOLID 6fc8fb51-b955-4c2b-afad-0175835e70d1 0bb49442-38ba-4eb0-8eda-780255c19045 RP5-1022P6.2 56261 hgsc.bcm.edu 36 20 5504594 5504594 + Missense_Mutation SNP C C T novel TCGA-09-1665-01B-01W-0615-10 TCGA-09-1665-11B-01W-0616-10 C C . . . . Unknown Untested Somatic Phase_III WXS none SOLID 6fc8fb51-b955-4c2b-afad-0175835e70d1 0bb49442-38ba-4eb0-8eda-780255c19045 STRN3 29966 hgsc.bcm.edu 36 14 30494614 30494614 + Silent SNP C C T novel TCGA-09-1665-01B-01W-0615-10 TCGA-09-1665-11B-01W-0616-10 C C . . . . Unknown Untested Somatic Phase_III WXS none SOLID 6fc8fb51-b955-4c2b-afad-0175835e70d1 0bb49442-38ba-4eb0-8eda-780255c19045 ZFYVE26 23503 hgsc.bcm.edu 36 14 67302709 67302709 + Frame_Shift_Del DEL G G - novel TCGA-09-1665-01B-01W-0615-10 TCGA-09-1665-11B-01W-0616-10 G G . . . . Unknown Untested Somatic Phase_III WXS none SOLID 6fc8fb51-b955-4c2b-afad-0175835e70d1 0bb49442-38ba-4eb0-8eda-780255c19045 ZNF563 147837 hgsc.bcm.edu 36 19 12290870 12290870 + Missense_Mutation SNP G G C novel TCGA-09-1665-01B-01W-0615-10 TCGA-09-1665-11B-01W-0616-10 G G . . . . Unknown Untested Somatic Phase_III WXS none SOLID 6fc8fb51-b955-4c2b-afad-0175835e70d1 0bb49442-38ba-4eb0-8eda-780255c19045 ABCG4 64137 hgsc.bcm.edu 36 11 118534634 118534634 + Missense_Mutation SNP C C A novel TCGA-09-1665-01B-01W-0615-10 TCGA-09-1665-11B-01W-0616-10 C C C A C C Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID 6fc8fb51-b955-4c2b-afad-0175835e70d1 0bb49442-38ba-4eb0-8eda-780255c19045 ACSS3 79611 hgsc.bcm.edu 36 12 80137972 80137972 + Silent SNP A A G novel TCGA-09-1665-01B-01W-0615-10 TCGA-09-1665-11B-01W-0616-10 A A A G A A Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID 6fc8fb51-b955-4c2b-afad-0175835e70d1 0bb49442-38ba-4eb0-8eda-780255c19045 AMPH 273 hgsc.bcm.edu 36 7 38471596 38471596 + Missense_Mutation SNP G G A novel TCGA-09-1665-01B-01W-0615-10 TCGA-09-1665-11B-01W-0616-10 G G G A G G Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID 6fc8fb51-b955-4c2b-afad-0175835e70d1 0bb49442-38ba-4eb0-8eda-780255c19045 ATAD2 29028 hgsc.bcm.edu 36 8 124409656 124409656 + Missense_Mutation SNP A A T novel TCGA-09-1665-01B-01W-0615-10 TCGA-09-1665-11B-01W-0616-10 A A A T A A Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID 6fc8fb51-b955-4c2b-afad-0175835e70d1 0bb49442-38ba-4eb0-8eda-780255c19045 BNC1 646 hgsc.bcm.edu 36 15 81723836 81723836 + Missense_Mutation SNP C C T novel TCGA-09-1665-01B-01W-0615-10 TCGA-09-1665-11B-01W-0616-10 C C C T C C Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID 6fc8fb51-b955-4c2b-afad-0175835e70d1 0bb49442-38ba-4eb0-8eda-780255c19045 C20orf54 113278 hgsc.bcm.edu 36 20 692283 692283 + Missense_Mutation SNP T T C novel TCGA-09-1665-01B-01W-0615-10 TCGA-09-1665-11B-01W-0616-10 T T T C T T Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID 6fc8fb51-b955-4c2b-afad-0175835e70d1 0bb49442-38ba-4eb0-8eda-780255c19045 C9orf3 84909 hgsc.bcm.edu 36 9 96562314 96562314 + Missense_Mutation SNP T T C novel TCGA-09-1665-01B-01W-0615-10 TCGA-09-1665-11B-01W-0616-10 T T T C T T Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID 6fc8fb51-b955-4c2b-afad-0175835e70d1 0bb49442-38ba-4eb0-8eda-780255c19045 CADM3 57863 hgsc.bcm.edu 36 1 157430347 157430347 + Missense_Mutation SNP C C T novel TCGA-09-1665-01B-01W-0615-10 TCGA-09-1665-11B-01W-0616-10 C C C T C C Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID 6fc8fb51-b955-4c2b-afad-0175835e70d1 0bb49442-38ba-4eb0-8eda-780255c19045 CASR 846 hgsc.bcm.edu 36 3 123486612 123486612 + Missense_Mutation SNP C C T novel TCGA-09-1665-01B-01W-0615-10 TCGA-09-1665-11B-01W-0616-10 C C C T C C Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID 6fc8fb51-b955-4c2b-afad-0175835e70d1 0bb49442-38ba-4eb0-8eda-780255c19045 CDKL1 8814 hgsc.bcm.edu 36 14 49875490 49875490 + Silent SNP G G A novel TCGA-09-1665-01B-01W-0615-10 TCGA-09-1665-11B-01W-0616-10 G G G A G G Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID 6fc8fb51-b955-4c2b-afad-0175835e70d1 0bb49442-38ba-4eb0-8eda-780255c19045 COL4A6 1288 hgsc.bcm.edu 36 X 107292893 107292893 + Silent SNP T T C novel TCGA-09-1665-01B-01W-0615-10 TCGA-09-1665-11B-01W-0616-10 T T T C T T Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID 6fc8fb51-b955-4c2b-afad-0175835e70d1 0bb49442-38ba-4eb0-8eda-780255c19045 CTSE 1510 hgsc.bcm.edu 36 1 204495402 204495402 + Silent SNP A A T novel TCGA-09-1665-01B-01W-0615-10 TCGA-09-1665-11B-01W-0616-10 A A A T A A Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID 6fc8fb51-b955-4c2b-afad-0175835e70d1 0bb49442-38ba-4eb0-8eda-780255c19045 DRD1 1812 hgsc.bcm.edu 36 5 174801396 174801396 + Missense_Mutation SNP A A G novel TCGA-09-1665-01B-01W-0615-10 TCGA-09-1665-11B-01W-0616-10 A A A G A A Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID 6fc8fb51-b955-4c2b-afad-0175835e70d1 0bb49442-38ba-4eb0-8eda-780255c19045 FAM71B 153745 hgsc.bcm.edu 36 5 156523083 156523083 + Silent SNP A A T novel TCGA-09-1665-01B-01W-0615-10 TCGA-09-1665-11B-01W-0616-10 A A A T A A Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID 6fc8fb51-b955-4c2b-afad-0175835e70d1 0bb49442-38ba-4eb0-8eda-780255c19045 FCF1 51077 hgsc.bcm.edu 36 14 74270578 74270578 + Missense_Mutation SNP G G T novel TCGA-09-1665-01B-01W-0615-10 TCGA-09-1665-11B-01W-0616-10 G G G T G G Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID 6fc8fb51-b955-4c2b-afad-0175835e70d1 0bb49442-38ba-4eb0-8eda-780255c19045 FTSJ3 117246 hgsc.bcm.edu 36 17 59257684 59257684 + Missense_Mutation SNP C C A novel TCGA-09-1665-01B-01W-0615-10 TCGA-09-1665-11B-01W-0616-10 C C C A C C Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID 6fc8fb51-b955-4c2b-afad-0175835e70d1 0bb49442-38ba-4eb0-8eda-780255c19045 GLI1 2735 hgsc.bcm.edu 36 12 56144865 56144865 + Silent SNP G G A novel TCGA-09-1665-01B-01W-0615-10 TCGA-09-1665-11B-01W-0616-10 G G G A G G Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID 6fc8fb51-b955-4c2b-afad-0175835e70d1 0bb49442-38ba-4eb0-8eda-780255c19045 GRIK4 2900 hgsc.bcm.edu 36 11 120207880 120207880 + Silent SNP C C T novel TCGA-09-1665-01B-01W-0615-10 TCGA-09-1665-11B-01W-0616-10 C C C T C C Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID 6fc8fb51-b955-4c2b-afad-0175835e70d1 0bb49442-38ba-4eb0-8eda-780255c19045 HCFC2 29915 hgsc.bcm.edu 36 12 102997488 102997488 + Silent SNP T T C novel TCGA-09-1665-01B-01W-0615-10 TCGA-09-1665-11B-01W-0616-10 T T T C T T Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID 6fc8fb51-b955-4c2b-afad-0175835e70d1 0bb49442-38ba-4eb0-8eda-780255c19045 IGF2R 3482 hgsc.bcm.edu 36 6 160437543 160437543 + Silent SNP C C T novel TCGA-09-1665-01B-01W-0615-10 TCGA-09-1665-11B-01W-0616-10 C C C T C C Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID 6fc8fb51-b955-4c2b-afad-0175835e70d1 0bb49442-38ba-4eb0-8eda-780255c19045 IL6R 3570 hgsc.bcm.edu 36 1 152704402 152704402 + Silent SNP G G A novel TCGA-09-1665-01B-01W-0615-10 TCGA-09-1665-11B-01W-0616-10 G G G A G G Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID 6fc8fb51-b955-4c2b-afad-0175835e70d1 0bb49442-38ba-4eb0-8eda-780255c19045 KAL1 3730 hgsc.bcm.edu 36 X 8551675 8551675 + Missense_Mutation SNP T T C novel TCGA-09-1665-01B-01W-0615-10 TCGA-09-1665-11B-01W-0616-10 T T C C T T Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID 6fc8fb51-b955-4c2b-afad-0175835e70d1 0bb49442-38ba-4eb0-8eda-780255c19045 KIAA1324L 222223 hgsc.bcm.edu 36 7 86394128 86394128 + Missense_Mutation SNP C C T novel TCGA-09-1665-01B-01W-0615-10 TCGA-09-1665-11B-01W-0616-10 C C C T C C Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID 6fc8fb51-b955-4c2b-afad-0175835e70d1 0bb49442-38ba-4eb0-8eda-780255c19045 LAMB4 22798 hgsc.bcm.edu 36 7 107483411 107483411 + Missense_Mutation SNP G G T novel TCGA-09-1665-01B-01W-0615-10 TCGA-09-1665-11B-01W-0616-10 G G G T G G Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID 6fc8fb51-b955-4c2b-afad-0175835e70d1 0bb49442-38ba-4eb0-8eda-780255c19045 LHFPL4 375323 hgsc.bcm.edu 36 3 9522725 9522725 + Missense_Mutation SNP A A T novel TCGA-09-1665-01B-01W-0615-10 TCGA-09-1665-11B-01W-0616-10 A A A T A A Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID 6fc8fb51-b955-4c2b-afad-0175835e70d1 0bb49442-38ba-4eb0-8eda-780255c19045 LRP1 4035 hgsc.bcm.edu 36 12 55889230 55889230 + Silent SNP G G T novel TCGA-09-1665-01B-01W-0615-10 TCGA-09-1665-11B-01W-0616-10 G G G T G G Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID 6fc8fb51-b955-4c2b-afad-0175835e70d1 0bb49442-38ba-4eb0-8eda-780255c19045 MAGEB6 158809 hgsc.bcm.edu 36 X 26122569 26122569 + Missense_Mutation SNP T T A novel TCGA-09-1665-01B-01W-0615-10 TCGA-09-1665-11B-01W-0616-10 T T T A T T Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID 6fc8fb51-b955-4c2b-afad-0175835e70d1 0bb49442-38ba-4eb0-8eda-780255c19045 MAP3K5 4217 hgsc.bcm.edu 36 6 136974134 136974134 + Missense_Mutation SNP G G A novel TCGA-09-1665-01B-01W-0615-10 TCGA-09-1665-11B-01W-0616-10 G G G A G G Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID 6fc8fb51-b955-4c2b-afad-0175835e70d1 0bb49442-38ba-4eb0-8eda-780255c19045 MLEC 9761 hgsc.bcm.edu 36 12 119618610 119618610 + Missense_Mutation SNP G G C novel TCGA-09-1665-01B-01W-0615-10 TCGA-09-1665-11B-01W-0616-10 G G G C G G Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID 6fc8fb51-b955-4c2b-afad-0175835e70d1 0bb49442-38ba-4eb0-8eda-780255c19045 MST1R 4486 hgsc.bcm.edu 36 3 49909996 49909996 + Silent SNP C C A novel TCGA-09-1665-01B-01W-0615-10 TCGA-09-1665-11B-01W-0616-10 C C A A C C Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID 6fc8fb51-b955-4c2b-afad-0175835e70d1 0bb49442-38ba-4eb0-8eda-780255c19045 MTMR8 55613 hgsc.bcm.edu 36 X 63491409 63491409 + Silent SNP G G T novel TCGA-09-1665-01B-01W-0615-10 TCGA-09-1665-11B-01W-0616-10 G G G T G G Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID 6fc8fb51-b955-4c2b-afad-0175835e70d1 0bb49442-38ba-4eb0-8eda-780255c19045 OAS1 4938 hgsc.bcm.edu 36 12 111838826 111838826 + Missense_Mutation SNP G G C novel TCGA-09-1665-01B-01W-0615-10 TCGA-09-1665-11B-01W-0616-10 G G G C G G Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID 6fc8fb51-b955-4c2b-afad-0175835e70d1 0bb49442-38ba-4eb0-8eda-780255c19045 PAQR5 54852 hgsc.bcm.edu 36 15 67464184 67464184 + Silent SNP C C T novel TCGA-09-1665-01B-01W-0615-10 TCGA-09-1665-11B-01W-0616-10 C C C T C C Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID 6fc8fb51-b955-4c2b-afad-0175835e70d1 0bb49442-38ba-4eb0-8eda-780255c19045 PPP2R3A 5523 hgsc.bcm.edu 36 3 137228537 137228537 + Missense_Mutation SNP T T A novel TCGA-09-1665-01B-01W-0615-10 TCGA-09-1665-11B-01W-0616-10 T T T A T T Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID 6fc8fb51-b955-4c2b-afad-0175835e70d1 0bb49442-38ba-4eb0-8eda-780255c19045 RCBTB2 1102 hgsc.bcm.edu 36 13 47984006 47984006 + Silent SNP G G A novel TCGA-09-1665-01B-01W-0615-10 TCGA-09-1665-11B-01W-0616-10 G G G A G G Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID 6fc8fb51-b955-4c2b-afad-0175835e70d1 0bb49442-38ba-4eb0-8eda-780255c19045 REL 5966 hgsc.bcm.edu 36 2 60997526 60997526 + Silent SNP A A G novel TCGA-09-1665-01B-01W-0615-10 TCGA-09-1665-11B-01W-0616-10 A A A G A A Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID 6fc8fb51-b955-4c2b-afad-0175835e70d1 0bb49442-38ba-4eb0-8eda-780255c19045 SMOC2 64094 hgsc.bcm.edu 36 6 168669894 168669894 + Silent SNP C C G novel TCGA-09-1665-01B-01W-0615-10 TCGA-09-1665-11B-01W-0616-10 C C C G C C Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID 6fc8fb51-b955-4c2b-afad-0175835e70d1 0bb49442-38ba-4eb0-8eda-780255c19045 SNTG1 54212 hgsc.bcm.edu 36 8 51611868 51611868 + Silent SNP C C T novel TCGA-09-1665-01B-01W-0615-10 TCGA-09-1665-11B-01W-0616-10 C C C T C C Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID 6fc8fb51-b955-4c2b-afad-0175835e70d1 0bb49442-38ba-4eb0-8eda-780255c19045 SPAG8 26206 hgsc.bcm.edu 36 9 35801022 35801022 + Missense_Mutation SNP G G T novel TCGA-09-1665-01B-01W-0615-10 TCGA-09-1665-11B-01W-0616-10 G G G T G G Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID 6fc8fb51-b955-4c2b-afad-0175835e70d1 0bb49442-38ba-4eb0-8eda-780255c19045 ST6GALNAC3 256435 hgsc.bcm.edu 36 1 76650418 76650418 + Silent SNP A A G novel TCGA-09-1665-01B-01W-0615-10 TCGA-09-1665-11B-01W-0616-10 A A A G A A Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID 6fc8fb51-b955-4c2b-afad-0175835e70d1 0bb49442-38ba-4eb0-8eda-780255c19045 SYT1 6857 hgsc.bcm.edu 36 12 78203762 78203762 + Silent SNP T T C novel TCGA-09-1665-01B-01W-0615-10 TCGA-09-1665-11B-01W-0616-10 T T T C T T Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID 6fc8fb51-b955-4c2b-afad-0175835e70d1 0bb49442-38ba-4eb0-8eda-780255c19045 SYT7 9066 hgsc.bcm.edu 36 11 61042737 61042737 + Missense_Mutation SNP A A T novel TCGA-09-1665-01B-01W-0615-10 TCGA-09-1665-11B-01W-0616-10 A A A T A A Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID 6fc8fb51-b955-4c2b-afad-0175835e70d1 0bb49442-38ba-4eb0-8eda-780255c19045 TCP11 6954 hgsc.bcm.edu 36 6 35195076 35195076 + Missense_Mutation SNP C C A novel TCGA-09-1665-01B-01W-0615-10 TCGA-09-1665-11B-01W-0616-10 C C C A C C Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID 6fc8fb51-b955-4c2b-afad-0175835e70d1 0bb49442-38ba-4eb0-8eda-780255c19045 TEKT1 83659 hgsc.bcm.edu 36 17 6663236 6663236 + Missense_Mutation SNP C C A novel TCGA-09-1665-01B-01W-0615-10 TCGA-09-1665-11B-01W-0616-10 C C C A C C Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID 6fc8fb51-b955-4c2b-afad-0175835e70d1 0bb49442-38ba-4eb0-8eda-780255c19045 TEX11 56159 hgsc.bcm.edu 36 X 69743567 69743567 + Silent SNP C C T novel TCGA-09-1665-01B-01W-0615-10 TCGA-09-1665-11B-01W-0616-10 C C C T C C Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID 6fc8fb51-b955-4c2b-afad-0175835e70d1 0bb49442-38ba-4eb0-8eda-780255c19045 TG 7038 hgsc.bcm.edu 36 8 134004864 134004864 + Missense_Mutation SNP G G C novel TCGA-09-1665-01B-01W-0615-10 TCGA-09-1665-11B-01W-0616-10 G G G C G G Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID 6fc8fb51-b955-4c2b-afad-0175835e70d1 0bb49442-38ba-4eb0-8eda-780255c19045 TOMM70A 9868 hgsc.bcm.edu 36 3 101587814 101587814 + Missense_Mutation SNP T T G novel TCGA-09-1665-01B-01W-0615-10 TCGA-09-1665-11B-01W-0616-10 T T T G T T Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID 6fc8fb51-b955-4c2b-afad-0175835e70d1 0bb49442-38ba-4eb0-8eda-780255c19045 ZCCHC9 84240 hgsc.bcm.edu 36 5 80644194 80644194 + Missense_Mutation SNP C C T novel TCGA-09-1665-01B-01W-0615-10 TCGA-09-1665-11B-01W-0616-10 C C C T C C Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID 6fc8fb51-b955-4c2b-afad-0175835e70d1 0bb49442-38ba-4eb0-8eda-780255c19045 ZNF211 10520 hgsc.bcm.edu 36 19 62844567 62844567 + Missense_Mutation SNP A A C novel TCGA-09-1665-01B-01W-0615-10 TCGA-09-1665-11B-01W-0616-10 A A A C A A Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID 6fc8fb51-b955-4c2b-afad-0175835e70d1 0bb49442-38ba-4eb0-8eda-780255c19045 ZNF828 283489 hgsc.bcm.edu 36 13 114108839 114108839 + Missense_Mutation SNP G G C novel TCGA-09-1665-01B-01W-0615-10 TCGA-09-1665-11B-01W-0616-10 G G G C G G Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID 6fc8fb51-b955-4c2b-afad-0175835e70d1 0bb49442-38ba-4eb0-8eda-780255c19045 ALPK2 115701 hgsc.bcm.edu 36 18 54342170 54342170 + Missense_Mutation SNP G G A novel TCGA-09-1665-01B-01W-0615-10 TCGA-09-1665-11B-01W-0616-10 G G G A G G Unknown Valid Somatic Phase_III WXS Sanger_PCR_WGA SOLID 6fc8fb51-b955-4c2b-afad-0175835e70d1 0bb49442-38ba-4eb0-8eda-780255c19045 APAF1 317 hgsc.bcm.edu 36 12 97585494 97585494 + Missense_Mutation SNP G G A novel TCGA-09-1665-01B-01W-0615-10 TCGA-09-1665-11B-01W-0616-10 G G G A G G Unknown Valid Somatic Phase_III WXS Sanger_PCR_WGA SOLID 6fc8fb51-b955-4c2b-afad-0175835e70d1 0bb49442-38ba-4eb0-8eda-780255c19045 ARFGEF1 10565 hgsc.bcm.edu 36 8 68366670 68366670 + Missense_Mutation SNP T T A novel TCGA-09-1665-01B-01W-0615-10 TCGA-09-1665-11B-01W-0616-10 T T A A T T Unknown Valid Somatic Phase_III WXS Sanger_PCR_WGA SOLID 6fc8fb51-b955-4c2b-afad-0175835e70d1 0bb49442-38ba-4eb0-8eda-780255c19045 ARR3 407 hgsc.bcm.edu 36 X 69406460 69406460 + Missense_Mutation SNP G G C novel TCGA-09-1665-01B-01W-0615-10 TCGA-09-1665-11B-01W-0616-10 G G G C G G Unknown Valid Somatic Phase_III WXS Sanger_PCR_WGA SOLID 6fc8fb51-b955-4c2b-afad-0175835e70d1 0bb49442-38ba-4eb0-8eda-780255c19045 ASAP3 55616 hgsc.bcm.edu 36 1 23632595 23632595 + Silent SNP C C A novel TCGA-09-1665-01B-01W-0615-10 TCGA-09-1665-11B-01W-0616-10 C C C A C C Unknown Valid Somatic Phase_III WXS Sanger_PCR_WGA SOLID 6fc8fb51-b955-4c2b-afad-0175835e70d1 0bb49442-38ba-4eb0-8eda-780255c19045 DKK2 27123 hgsc.bcm.edu 36 4 108065300 108065300 + Missense_Mutation SNP C C G novel TCGA-09-1665-01B-01W-0615-10 TCGA-09-1665-11B-01W-0616-10 C C C G C C Unknown Valid Somatic Phase_III WXS Sanger_PCR_WGA SOLID 6fc8fb51-b955-4c2b-afad-0175835e70d1 0bb49442-38ba-4eb0-8eda-780255c19045 ERBB2IP 55914 hgsc.bcm.edu 36 5 65378114 65378114 + Missense_Mutation SNP G G A novel TCGA-09-1665-01B-01W-0615-10 TCGA-09-1665-11B-01W-0616-10 G G G A G G Unknown Valid Somatic Phase_III WXS Sanger_PCR_WGA SOLID 6fc8fb51-b955-4c2b-afad-0175835e70d1 0bb49442-38ba-4eb0-8eda-780255c19045 FOXG1 2290 hgsc.bcm.edu 36 14 28307616 28307616 + Missense_Mutation SNP G G C novel TCGA-09-1665-01B-01W-0615-10 TCGA-09-1665-11B-01W-0616-10 G G G C G G Unknown Valid Somatic Phase_III WXS Sanger_PCR_WGA SOLID 6fc8fb51-b955-4c2b-afad-0175835e70d1 0bb49442-38ba-4eb0-8eda-780255c19045 FOXN4 121643 hgsc.bcm.edu 36 12 108202085 108202085 + Missense_Mutation SNP A A T novel TCGA-09-1665-01B-01W-0615-10 TCGA-09-1665-11B-01W-0616-10 A A A T A A Unknown Valid Somatic Phase_III WXS Sanger_PCR_WGA SOLID 6fc8fb51-b955-4c2b-afad-0175835e70d1 0bb49442-38ba-4eb0-8eda-780255c19045 FOXP2 93986 hgsc.bcm.edu 36 7 114091628 114091628 + Missense_Mutation SNP G G A novel TCGA-09-1665-01B-01W-0615-10 TCGA-09-1665-11B-01W-0616-10 G G G A G G Unknown Valid Somatic Phase_III WXS Sanger_PCR_WGA SOLID 6fc8fb51-b955-4c2b-afad-0175835e70d1 0bb49442-38ba-4eb0-8eda-780255c19045 GUCY2C 2984 hgsc.bcm.edu 36 12 14685306 14685306 + Missense_Mutation SNP G G A novel TCGA-09-1665-01B-01W-0615-10 TCGA-09-1665-11B-01W-0616-10 G G G A G G Unknown Valid Somatic Phase_III WXS Sanger_PCR_WGA SOLID 6fc8fb51-b955-4c2b-afad-0175835e70d1 0bb49442-38ba-4eb0-8eda-780255c19045 HACE1 57531 hgsc.bcm.edu 36 6 105351285 105351285 + Missense_Mutation SNP G G T novel TCGA-09-1665-01B-01W-0615-10 TCGA-09-1665-11B-01W-0616-10 G G G T G G Unknown Valid Somatic Phase_III WXS Sanger_PCR_WGA SOLID 6fc8fb51-b955-4c2b-afad-0175835e70d1 0bb49442-38ba-4eb0-8eda-780255c19045 IL17RC 84818 hgsc.bcm.edu 36 3 9937623 9937623 + Missense_Mutation SNP G G A novel TCGA-09-1665-01B-01W-0615-10 TCGA-09-1665-11B-01W-0616-10 G G G A G G Unknown Valid Somatic Phase_III WXS Sanger_PCR_WGA SOLID 6fc8fb51-b955-4c2b-afad-0175835e70d1 0bb49442-38ba-4eb0-8eda-780255c19045 ITSN1 6453 hgsc.bcm.edu 36 21 34176536 34176536 + Silent SNP C C G novel TCGA-09-1665-01B-01W-0615-10 TCGA-09-1665-11B-01W-0616-10 C C C G C C Unknown Valid Somatic Phase_III WXS Sanger_PCR_WGA SOLID 6fc8fb51-b955-4c2b-afad-0175835e70d1 0bb49442-38ba-4eb0-8eda-780255c19045 KIAA0406 9675 hgsc.bcm.edu 36 20 36075018 36075018 + Missense_Mutation SNP C C G novel TCGA-09-1665-01B-01W-0615-10 TCGA-09-1665-11B-01W-0616-10 C C C G C C Unknown Valid Somatic Phase_III WXS Sanger_PCR_WGA SOLID 6fc8fb51-b955-4c2b-afad-0175835e70d1 0bb49442-38ba-4eb0-8eda-780255c19045 KIT 3815 hgsc.bcm.edu 36 4 55256459 55256459 + Missense_Mutation SNP C C T novel TCGA-09-1665-01B-01W-0615-10 TCGA-09-1665-11B-01W-0616-10 C C C T C C Unknown Valid Somatic Phase_III WXS Sanger_PCR_WGA SOLID 6fc8fb51-b955-4c2b-afad-0175835e70d1 0bb49442-38ba-4eb0-8eda-780255c19045 LRP1B 53353 hgsc.bcm.edu 36 2 140975891 140975891 + Missense_Mutation SNP A A T novel TCGA-09-1665-01B-01W-0615-10 TCGA-09-1665-11B-01W-0616-10 A A A T A A Unknown Valid Somatic Phase_III WXS Sanger_PCR_WGA SOLID 6fc8fb51-b955-4c2b-afad-0175835e70d1 0bb49442-38ba-4eb0-8eda-780255c19045 MDC1 9656 hgsc.bcm.edu 36 6 30779295 30779295 + Splice_Site SNP T T C novel TCGA-09-1665-01B-01W-0615-10 TCGA-09-1665-11B-01W-0616-10 T T T C T T Unknown Valid Somatic Phase_III WXS Sanger_PCR_WGA SOLID 6fc8fb51-b955-4c2b-afad-0175835e70d1 0bb49442-38ba-4eb0-8eda-780255c19045 NPR1 4881 hgsc.bcm.edu 36 1 151924921 151924921 + Missense_Mutation SNP G G A rs61757359 TCGA-09-1665-01B-01W-0615-10 TCGA-09-1665-11B-01W-0616-10 G G G A G G Unknown Valid Somatic Phase_III WXS Sanger_PCR_WGA SOLID 6fc8fb51-b955-4c2b-afad-0175835e70d1 0bb49442-38ba-4eb0-8eda-780255c19045 NTM 50863 hgsc.bcm.edu 36 11 131521553 131521553 + Missense_Mutation SNP C C A novel TCGA-09-1665-01B-01W-0615-10 TCGA-09-1665-11B-01W-0616-10 C C C A C C Unknown Valid Somatic Phase_III WXS Sanger_PCR_WGA SOLID 6fc8fb51-b955-4c2b-afad-0175835e70d1 0bb49442-38ba-4eb0-8eda-780255c19045 OXCT1 5019 hgsc.bcm.edu 36 5 41898503 41898503 + Missense_Mutation SNP C C A novel TCGA-09-1665-01B-01W-0615-10 TCGA-09-1665-11B-01W-0616-10 C C C A C C Unknown Valid Somatic Phase_III WXS Sanger_PCR_WGA SOLID 6fc8fb51-b955-4c2b-afad-0175835e70d1 0bb49442-38ba-4eb0-8eda-780255c19045 PEX5 5830 hgsc.bcm.edu 36 12 7253018 7253018 + Silent SNP C C T novel TCGA-09-1665-01B-01W-0615-10 TCGA-09-1665-11B-01W-0616-10 C C C T C C Unknown Valid Somatic Phase_III WXS Sanger_PCR_WGA SOLID 6fc8fb51-b955-4c2b-afad-0175835e70d1 0bb49442-38ba-4eb0-8eda-780255c19045 PLCB1 23236 hgsc.bcm.edu 36 20 8646361 8646361 + Missense_Mutation SNP A A G novel TCGA-09-1665-01B-01W-0615-10 TCGA-09-1665-11B-01W-0616-10 A A A G A A Unknown Valid Somatic Phase_III WXS Sanger_PCR_WGA SOLID 6fc8fb51-b955-4c2b-afad-0175835e70d1 0bb49442-38ba-4eb0-8eda-780255c19045 SLC17A6 57084 hgsc.bcm.edu 36 11 22337562 22337562 + Silent SNP C C T novel TCGA-09-1665-01B-01W-0615-10 TCGA-09-1665-11B-01W-0616-10 C C C T C C Unknown Valid Somatic Phase_III WXS Sanger_PCR_WGA SOLID 6fc8fb51-b955-4c2b-afad-0175835e70d1 0bb49442-38ba-4eb0-8eda-780255c19045 SLC6A3 6531 hgsc.bcm.edu 36 5 1454057 1454057 + Silent SNP C C T novel TCGA-09-1665-01B-01W-0615-10 TCGA-09-1665-11B-01W-0616-10 C C C T C C Unknown Valid Somatic Phase_III WXS Sanger_PCR_WGA SOLID 6fc8fb51-b955-4c2b-afad-0175835e70d1 0bb49442-38ba-4eb0-8eda-780255c19045 SNX27 81609 hgsc.bcm.edu 36 1 149897409 149897409 + Missense_Mutation SNP C C G novel TCGA-09-1665-01B-01W-0615-10 TCGA-09-1665-11B-01W-0616-10 C C C G C C Unknown Valid Somatic Phase_III WXS Sanger_PCR_WGA SOLID 6fc8fb51-b955-4c2b-afad-0175835e70d1 0bb49442-38ba-4eb0-8eda-780255c19045 TP53 7157 hgsc.bcm.edu 36 17 7518231 7518231 + Missense_Mutation SNP C C A novel TCGA-09-1665-01B-01W-0615-10 TCGA-09-1665-11B-01W-0616-10 C C A A C C Unknown Valid Somatic Phase_III WXS Sanger_PCR_WGA SOLID 6fc8fb51-b955-4c2b-afad-0175835e70d1 0bb49442-38ba-4eb0-8eda-780255c19045 TTN 7273 hgsc.bcm.edu 36 2 179320766 179320766 + Missense_Mutation SNP G G T novel TCGA-09-1665-01B-01W-0615-10 TCGA-09-1665-11B-01W-0616-10 G G G T G G Unknown Valid Somatic Phase_III WXS Sanger_PCR_WGA SOLID 6fc8fb51-b955-4c2b-afad-0175835e70d1 0bb49442-38ba-4eb0-8eda-780255c19045 ZEB2 9839 hgsc.bcm.edu 36 2 144872480 144872480 + Missense_Mutation SNP G G T novel TCGA-09-1665-01B-01W-0615-10 TCGA-09-1665-11B-01W-0616-10 G G G T G G Unknown Valid Somatic Phase_III WXS Sanger_PCR_WGA SOLID 6fc8fb51-b955-4c2b-afad-0175835e70d1 0bb49442-38ba-4eb0-8eda-780255c19045 ZFYVE26 23503 hgsc.bcm.edu 36 14 67314115 67314115 + Missense_Mutation SNP A A C novel TCGA-09-1665-01B-01W-0615-10 TCGA-09-1665-11B-01W-0616-10 A A A C A A Unknown Valid Somatic Phase_III WXS Sanger_PCR_WGA SOLID 6fc8fb51-b955-4c2b-afad-0175835e70d1 0bb49442-38ba-4eb0-8eda-780255c19045 ZNF238 10472 hgsc.bcm.edu 36 1 242283789 242283793 + Frame_Shift_Del DEL TTTTC TTTTC - novel TCGA-09-1665-01B-01W-0615-10 TCGA-09-1665-11B-01W-0616-10 TTTTC TTTTC TTTTC - TTTTC TTTTC Unknown Valid Somatic Phase_III WXS Sanger_PCR_WGA SOLID 6fc8fb51-b955-4c2b-afad-0175835e70d1 0bb49442-38ba-4eb0-8eda-780255c19045 ZNF333 84449 hgsc.bcm.edu 36 19 14690061 14690061 + Missense_Mutation SNP A A G novel TCGA-09-1665-01B-01W-0615-10 TCGA-09-1665-11B-01W-0616-10 A A A G A A Unknown Valid Somatic Phase_III WXS Sanger_PCR_WGA SOLID 6fc8fb51-b955-4c2b-afad-0175835e70d1 0bb49442-38ba-4eb0-8eda-780255c19045 ZNF500 26048 hgsc.bcm.edu 36 16 4742731 4742731 + Missense_Mutation SNP C C T novel TCGA-09-1665-01B-01W-0615-10 TCGA-09-1665-11B-01W-0616-10 C C C T C C Unknown Valid Somatic Phase_III WXS Sanger_PCR_WGA SOLID 6fc8fb51-b955-4c2b-afad-0175835e70d1 0bb49442-38ba-4eb0-8eda-780255c19045