Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID NT5C1A 84618 broad.mit.edu 36 1 39899355 39899355 + Missense_Mutation SNP T T C novel none TCGA-09-2056-01B-01W-0722-08 TCGA-09-2056-11A-01W-0722-08 T T C C T T Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 62aa1fcd-44d8-427d-84f5-e936c3ed460b d044d541-9046-4d49-8c39-2b67a3c18520 C1orf168 199920 broad.mit.edu 36 1 56961914 56961914 + Missense_Mutation SNP T T C novel none TCGA-09-2056-01B-01W-0722-08 TCGA-09-2056-11A-01W-0722-08 T T C C T T Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 62aa1fcd-44d8-427d-84f5-e936c3ed460b d044d541-9046-4d49-8c39-2b67a3c18520 PI4KB 5298 broad.mit.edu 36 1 149541337 149541337 + Missense_Mutation SNP G G C novel none TCGA-09-2056-01B-01W-0722-08 TCGA-09-2056-11A-01W-0722-08 G G C C G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 62aa1fcd-44d8-427d-84f5-e936c3ed460b d044d541-9046-4d49-8c39-2b67a3c18520 CD5L 922 broad.mit.edu 36 1 156069752 156069752 + Missense_Mutation SNP C C A novel none TCGA-09-2056-01B-01W-0722-08 TCGA-09-2056-11A-01W-0722-08 C C A A C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 62aa1fcd-44d8-427d-84f5-e936c3ed460b d044d541-9046-4d49-8c39-2b67a3c18520 OR10T2 128360 broad.mit.edu 36 1 156635631 156635631 + Missense_Mutation SNP C C T novel none TCGA-09-2056-01B-01W-0722-08 TCGA-09-2056-11A-01W-0722-08 C C T T C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 62aa1fcd-44d8-427d-84f5-e936c3ed460b d044d541-9046-4d49-8c39-2b67a3c18520 FAM71A 149647 broad.mit.edu 36 1 210865159 210865159 + Missense_Mutation SNP A A T novel none TCGA-09-2056-01B-01W-0722-08 TCGA-09-2056-11A-01W-0722-08 A A T T A A Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 62aa1fcd-44d8-427d-84f5-e936c3ed460b d044d541-9046-4d49-8c39-2b67a3c18520 USH2A 7399 broad.mit.edu 36 1 213914970 213914970 + Silent SNP C C T novel none TCGA-09-2056-01B-01W-0722-08 TCGA-09-2056-11A-01W-0722-08 C C T T C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 62aa1fcd-44d8-427d-84f5-e936c3ed460b d044d541-9046-4d49-8c39-2b67a3c18520 TRIM58 25893 broad.mit.edu 36 1 246106327 246106327 + Silent SNP G G A novel none TCGA-09-2056-01B-01W-0722-08 TCGA-09-2056-11A-01W-0722-08 G G A A G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 62aa1fcd-44d8-427d-84f5-e936c3ed460b d044d541-9046-4d49-8c39-2b67a3c18520 UPF2 26019 broad.mit.edu 36 10 12079761 12079761 + Missense_Mutation SNP G G C novel none TCGA-09-2056-01B-01W-0722-08 TCGA-09-2056-11A-01W-0722-08 G G C C G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 62aa1fcd-44d8-427d-84f5-e936c3ed460b d044d541-9046-4d49-8c39-2b67a3c18520 WAPAL 23063 broad.mit.edu 36 10 88187336 88187336 + Missense_Mutation SNP C C G novel none TCGA-09-2056-01B-01W-0722-08 TCGA-09-2056-11A-01W-0722-08 C C G G C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 62aa1fcd-44d8-427d-84f5-e936c3ed460b d044d541-9046-4d49-8c39-2b67a3c18520 OPN4 94233 broad.mit.edu 36 10 88409710 88409710 + Missense_Mutation SNP G G C novel none TCGA-09-2056-01B-01W-0722-08 TCGA-09-2056-11A-01W-0722-08 G G C C G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 62aa1fcd-44d8-427d-84f5-e936c3ed460b d044d541-9046-4d49-8c39-2b67a3c18520 HPSE2 60495 broad.mit.edu 36 10 100894116 100894116 + Missense_Mutation SNP T T A novel none TCGA-09-2056-01B-01W-0722-08 TCGA-09-2056-11A-01W-0722-08 T T A A T T Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 62aa1fcd-44d8-427d-84f5-e936c3ed460b d044d541-9046-4d49-8c39-2b67a3c18520 OR51F2 119694 broad.mit.edu 36 11 4800137 4800137 + Missense_Mutation SNP G G A novel none TCGA-09-2056-01B-01W-0722-08 TCGA-09-2056-11A-01W-0722-08 G G A A G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 62aa1fcd-44d8-427d-84f5-e936c3ed460b d044d541-9046-4d49-8c39-2b67a3c18520 ACCS 84680 broad.mit.edu 36 11 44055977 44055977 + Missense_Mutation SNP G G C novel none TCGA-09-2056-01B-01W-0722-08 TCGA-09-2056-11A-01W-0722-08 G G C C G G Unknown Valid Somatic Phase_I Capture Sequenom;Capture Illumina GAIIx 62aa1fcd-44d8-427d-84f5-e936c3ed460b d044d541-9046-4d49-8c39-2b67a3c18520 MS4A1 931 broad.mit.edu 36 11 59987094 59987094 + Missense_Mutation SNP G G T novel none TCGA-09-2056-01B-01W-0722-08 TCGA-09-2056-11A-01W-0722-08 G G T T G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 62aa1fcd-44d8-427d-84f5-e936c3ed460b d044d541-9046-4d49-8c39-2b67a3c18520 FADS2 9415 broad.mit.edu 36 11 61361848 61361848 + Missense_Mutation SNP C C G novel none TCGA-09-2056-01B-01W-0722-08 TCGA-09-2056-11A-01W-0722-08 C C G G C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 62aa1fcd-44d8-427d-84f5-e936c3ed460b d044d541-9046-4d49-8c39-2b67a3c18520 GAB2 9846 broad.mit.edu 36 11 77612164 77612164 + Missense_Mutation SNP G G C novel none TCGA-09-2056-01B-01W-0722-08 TCGA-09-2056-11A-01W-0722-08 G G C C G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 62aa1fcd-44d8-427d-84f5-e936c3ed460b d044d541-9046-4d49-8c39-2b67a3c18520 DSCAML1 57453 broad.mit.edu 36 11 116892526 116892526 + Missense_Mutation SNP C C A novel none TCGA-09-2056-01B-01W-0722-08 TCGA-09-2056-11A-01W-0722-08 C C A A C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 62aa1fcd-44d8-427d-84f5-e936c3ed460b d044d541-9046-4d49-8c39-2b67a3c18520 NAV3 89795 broad.mit.edu 36 12 77037611 77037611 + Missense_Mutation SNP C C G novel none TCGA-09-2056-01B-01W-0722-08 TCGA-09-2056-11A-01W-0722-08 C C G G C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 62aa1fcd-44d8-427d-84f5-e936c3ed460b d044d541-9046-4d49-8c39-2b67a3c18520 LRRIQ1 84125 broad.mit.edu 36 12 83973687 83973687 + Nonsense_Mutation SNP C C T novel none TCGA-09-2056-01B-01W-0722-08 TCGA-09-2056-11A-01W-0722-08 C C T T C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 62aa1fcd-44d8-427d-84f5-e936c3ed460b d044d541-9046-4d49-8c39-2b67a3c18520 EP400 57634 broad.mit.edu 36 12 131082509 131082509 + Missense_Mutation SNP A A C novel none TCGA-09-2056-01B-01W-0722-08 TCGA-09-2056-11A-01W-0722-08 A A C C A A Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 62aa1fcd-44d8-427d-84f5-e936c3ed460b d044d541-9046-4d49-8c39-2b67a3c18520 SYNE2 23224 broad.mit.edu 36 14 63674394 63674394 + Missense_Mutation SNP T T G novel none TCGA-09-2056-01B-01W-0722-08 TCGA-09-2056-11A-01W-0722-08 T T G G T T Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 62aa1fcd-44d8-427d-84f5-e936c3ed460b d044d541-9046-4d49-8c39-2b67a3c18520 DMXL2 23312 broad.mit.edu 36 15 49616266 49616266 + Missense_Mutation SNP A A C novel none TCGA-09-2056-01B-01W-0722-08 TCGA-09-2056-11A-01W-0722-08 A A C C A A Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 62aa1fcd-44d8-427d-84f5-e936c3ed460b d044d541-9046-4d49-8c39-2b67a3c18520 MEF2A 4205 broad.mit.edu 36 15 98068481 98068481 + Missense_Mutation SNP T T A novel none TCGA-09-2056-01B-01W-0722-08 TCGA-09-2056-11A-01W-0722-08 T T A A T T Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 62aa1fcd-44d8-427d-84f5-e936c3ed460b d044d541-9046-4d49-8c39-2b67a3c18520 ABCA3 21 broad.mit.edu 36 16 2287485 2287485 + Missense_Mutation SNP G G C novel none TCGA-09-2056-01B-01W-0722-08 TCGA-09-2056-11A-01W-0722-08 G G C C G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 62aa1fcd-44d8-427d-84f5-e936c3ed460b d044d541-9046-4d49-8c39-2b67a3c18520 C16orf62 57020 broad.mit.edu 36 16 19491949 19491949 + Missense_Mutation SNP C C G novel none TCGA-09-2056-01B-01W-0722-08 TCGA-09-2056-11A-01W-0722-08 C C G G C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 62aa1fcd-44d8-427d-84f5-e936c3ed460b d044d541-9046-4d49-8c39-2b67a3c18520 PALB2 79728 broad.mit.edu 36 16 23554260 23554260 + Nonsense_Mutation SNP G G A novel none TCGA-09-2056-01B-01W-0722-08 TCGA-09-2056-11A-01W-0722-08 G G A A G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 62aa1fcd-44d8-427d-84f5-e936c3ed460b d044d541-9046-4d49-8c39-2b67a3c18520 MT4 84560 broad.mit.edu 36 16 55160320 55160320 + Nonsense_Mutation SNP C C G novel none TCGA-09-2056-01B-01W-0722-08 TCGA-09-2056-11A-01W-0722-08 C C G G C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 62aa1fcd-44d8-427d-84f5-e936c3ed460b d044d541-9046-4d49-8c39-2b67a3c18520 KIAA1609 57707 broad.mit.edu 36 16 83080502 83080502 + Missense_Mutation SNP C C A novel none TCGA-09-2056-01B-01W-0722-08 TCGA-09-2056-11A-01W-0722-08 C C A A C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 62aa1fcd-44d8-427d-84f5-e936c3ed460b d044d541-9046-4d49-8c39-2b67a3c18520 OR1D2 4991 broad.mit.edu 36 17 2942515 2942515 + Missense_Mutation SNP A A T novel none TCGA-09-2056-01B-01W-0722-08 TCGA-09-2056-11A-01W-0722-08 A A T T A A Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 62aa1fcd-44d8-427d-84f5-e936c3ed460b d044d541-9046-4d49-8c39-2b67a3c18520 NLRP1 22861 broad.mit.edu 36 17 5403432 5403432 + Silent SNP C C T novel none TCGA-09-2056-01B-01W-0722-08 TCGA-09-2056-11A-01W-0722-08 C C T T C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 62aa1fcd-44d8-427d-84f5-e936c3ed460b d044d541-9046-4d49-8c39-2b67a3c18520 CASC3 22794 broad.mit.edu 36 17 35573442 35573442 + Missense_Mutation SNP G G C novel none TCGA-09-2056-01B-01W-0722-08 TCGA-09-2056-11A-01W-0722-08 G G C C G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 62aa1fcd-44d8-427d-84f5-e936c3ed460b d044d541-9046-4d49-8c39-2b67a3c18520 MED13 9969 broad.mit.edu 36 17 57414887 57414887 + Missense_Mutation SNP C C G novel none TCGA-09-2056-01B-01W-0722-08 TCGA-09-2056-11A-01W-0722-08 C C G G C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 62aa1fcd-44d8-427d-84f5-e936c3ed460b d044d541-9046-4d49-8c39-2b67a3c18520 KIAA1012 22878 broad.mit.edu 36 18 27666044 27666044 + Splice_Site SNP C C T novel none TCGA-09-2056-01B-01W-0722-08 TCGA-09-2056-11A-01W-0722-08 C C T T C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 62aa1fcd-44d8-427d-84f5-e936c3ed460b d044d541-9046-4d49-8c39-2b67a3c18520 ISYNA1 51477 broad.mit.edu 36 19 18407730 18407730 + Missense_Mutation SNP G G T novel none TCGA-09-2056-01B-01W-0722-08 TCGA-09-2056-11A-01W-0722-08 G G T T G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 62aa1fcd-44d8-427d-84f5-e936c3ed460b d044d541-9046-4d49-8c39-2b67a3c18520 C19orf46 163183 broad.mit.edu 36 19 41189971 41189971 + Missense_Mutation SNP T T C novel none TCGA-09-2056-01B-01W-0722-08 TCGA-09-2056-11A-01W-0722-08 T T C C T T Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 62aa1fcd-44d8-427d-84f5-e936c3ed460b d044d541-9046-4d49-8c39-2b67a3c18520 PLB1 151056 broad.mit.edu 36 2 28625255 28625255 + Missense_Mutation SNP G G A novel none TCGA-09-2056-01B-01W-0722-08 TCGA-09-2056-11A-01W-0722-08 G G A A G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 62aa1fcd-44d8-427d-84f5-e936c3ed460b d044d541-9046-4d49-8c39-2b67a3c18520 NLRC4 58484 broad.mit.edu 36 2 32331086 32331086 + Missense_Mutation SNP G G T novel none TCGA-09-2056-01B-01W-0722-08 TCGA-09-2056-11A-01W-0722-08 G G T T G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 62aa1fcd-44d8-427d-84f5-e936c3ed460b d044d541-9046-4d49-8c39-2b67a3c18520 LRP1B 53353 broad.mit.edu 36 2 141287810 141287810 + Missense_Mutation SNP A A G novel none TCGA-09-2056-01B-01W-0722-08 TCGA-09-2056-11A-01W-0722-08 A A G G A A Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 62aa1fcd-44d8-427d-84f5-e936c3ed460b d044d541-9046-4d49-8c39-2b67a3c18520 RIF1 55183 broad.mit.edu 36 2 152022519 152022519 + Splice_Site SNP A A G novel none TCGA-09-2056-01B-01W-0722-08 TCGA-09-2056-11A-01W-0722-08 A A G G A A Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 62aa1fcd-44d8-427d-84f5-e936c3ed460b d044d541-9046-4d49-8c39-2b67a3c18520 TTN 7273 broad.mit.edu 36 2 179358642 179358642 + Missense_Mutation SNP G G C novel none TCGA-09-2056-01B-01W-0722-08 TCGA-09-2056-11A-01W-0722-08 G G C C G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 62aa1fcd-44d8-427d-84f5-e936c3ed460b d044d541-9046-4d49-8c39-2b67a3c18520 LZTR1 8216 broad.mit.edu 36 22 19674673 19674673 + Splice_Site SNP A A C novel none TCGA-09-2056-01B-01W-0722-08 TCGA-09-2056-11A-01W-0722-08 A A C C A A Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 62aa1fcd-44d8-427d-84f5-e936c3ed460b d044d541-9046-4d49-8c39-2b67a3c18520 CCDC116 164592 broad.mit.edu 36 22 20318734 20318734 + Missense_Mutation SNP G G C rs35746656 unknown TCGA-09-2056-01B-01W-0722-08 TCGA-09-2056-11A-01W-0722-08 G G C C G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 62aa1fcd-44d8-427d-84f5-e936c3ed460b d044d541-9046-4d49-8c39-2b67a3c18520 MYLK 4638 broad.mit.edu 36 3 124954057 124954057 + Missense_Mutation SNP G G C novel none TCGA-09-2056-01B-01W-0722-08 TCGA-09-2056-11A-01W-0722-08 G G C C G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 62aa1fcd-44d8-427d-84f5-e936c3ed460b d044d541-9046-4d49-8c39-2b67a3c18520 CHST2 9435 broad.mit.edu 36 3 144322501 144322501 + Missense_Mutation SNP C C G novel none TCGA-09-2056-01B-01W-0722-08 TCGA-09-2056-11A-01W-0722-08 C C G G C C Unknown Valid Somatic Phase_I Capture Sequenom;Capture Illumina GAIIx 62aa1fcd-44d8-427d-84f5-e936c3ed460b d044d541-9046-4d49-8c39-2b67a3c18520 SLITRK3 22865 broad.mit.edu 36 3 166388818 166388818 + Missense_Mutation SNP G G A novel none TCGA-09-2056-01B-01W-0722-08 TCGA-09-2056-11A-01W-0722-08 G G A A G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 62aa1fcd-44d8-427d-84f5-e936c3ed460b d044d541-9046-4d49-8c39-2b67a3c18520 KIT 3815 broad.mit.edu 36 4 55268073 55268073 + Silent SNP C C T novel none TCGA-09-2056-01B-01W-0722-08 TCGA-09-2056-11A-01W-0722-08 C C T T C C Unknown Valid Somatic Phase_I Capture Sequenom;Capture Illumina GAIIx 62aa1fcd-44d8-427d-84f5-e936c3ed460b d044d541-9046-4d49-8c39-2b67a3c18520 NAF1 92345 broad.mit.edu 36 4 164286454 164286454 + Missense_Mutation SNP G G C novel none TCGA-09-2056-01B-01W-0722-08 TCGA-09-2056-11A-01W-0722-08 G G C C G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 62aa1fcd-44d8-427d-84f5-e936c3ed460b d044d541-9046-4d49-8c39-2b67a3c18520 CDH9 1007 broad.mit.edu 36 5 26938369 26938369 + Missense_Mutation SNP T T A novel none TCGA-09-2056-01B-01W-0722-08 TCGA-09-2056-11A-01W-0722-08 T T A A T T Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 62aa1fcd-44d8-427d-84f5-e936c3ed460b d044d541-9046-4d49-8c39-2b67a3c18520 VCAN 1462 broad.mit.edu 36 5 82871373 82871373 + Silent SNP T T C novel none TCGA-09-2056-01B-01W-0722-08 TCGA-09-2056-11A-01W-0722-08 T T C C T T Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 62aa1fcd-44d8-427d-84f5-e936c3ed460b d044d541-9046-4d49-8c39-2b67a3c18520 FBN2 2201 broad.mit.edu 36 5 127672948 127672948 + Missense_Mutation SNP G G A novel none TCGA-09-2056-01B-01W-0722-08 TCGA-09-2056-11A-01W-0722-08 G G A A G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 62aa1fcd-44d8-427d-84f5-e936c3ed460b d044d541-9046-4d49-8c39-2b67a3c18520 PCDHB2 56133 broad.mit.edu 36 5 140455013 140455013 + Missense_Mutation SNP C C A novel none TCGA-09-2056-01B-01W-0722-08 TCGA-09-2056-11A-01W-0722-08 C C A A C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 62aa1fcd-44d8-427d-84f5-e936c3ed460b d044d541-9046-4d49-8c39-2b67a3c18520 BTNL9 153579 broad.mit.edu 36 5 180419230 180419230 + Missense_Mutation SNP C C T novel none TCGA-09-2056-01B-01W-0722-08 TCGA-09-2056-11A-01W-0722-08 C C T T C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 62aa1fcd-44d8-427d-84f5-e936c3ed460b d044d541-9046-4d49-8c39-2b67a3c18520 PGK2 5232 broad.mit.edu 36 6 49862556 49862556 + Missense_Mutation SNP C C A novel none TCGA-09-2056-01B-01W-0722-08 TCGA-09-2056-11A-01W-0722-08 C C A A C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 62aa1fcd-44d8-427d-84f5-e936c3ed460b d044d541-9046-4d49-8c39-2b67a3c18520 CASP8AP2 9994 broad.mit.edu 36 6 90632438 90632438 + Missense_Mutation SNP C C G novel none TCGA-09-2056-01B-01W-0722-08 TCGA-09-2056-11A-01W-0722-08 C C G G C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 62aa1fcd-44d8-427d-84f5-e936c3ed460b d044d541-9046-4d49-8c39-2b67a3c18520 HOXA1 3198 broad.mit.edu 36 7 27101502 27101502 + Silent SNP G G T novel none TCGA-09-2056-01B-01W-0722-08 TCGA-09-2056-11A-01W-0722-08 G G T T G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 62aa1fcd-44d8-427d-84f5-e936c3ed460b d044d541-9046-4d49-8c39-2b67a3c18520 PSPH 5723 broad.mit.edu 36 7 56046949 56046949 + Nonstop_Mutation SNP T T A novel none TCGA-09-2056-01B-01W-0722-08 TCGA-09-2056-11A-01W-0722-08 T T A A T T Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 62aa1fcd-44d8-427d-84f5-e936c3ed460b d044d541-9046-4d49-8c39-2b67a3c18520 GAL3ST4 79690 broad.mit.edu 36 7 99596462 99596462 + Silent SNP C C T novel none TCGA-09-2056-01B-01W-0722-08 TCGA-09-2056-11A-01W-0722-08 C C T T C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 62aa1fcd-44d8-427d-84f5-e936c3ed460b d044d541-9046-4d49-8c39-2b67a3c18520 NUP205 23165 broad.mit.edu 36 7 134920120 134920120 + Missense_Mutation SNP C C G novel none TCGA-09-2056-01B-01W-0722-08 TCGA-09-2056-11A-01W-0722-08 C C G G C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 62aa1fcd-44d8-427d-84f5-e936c3ed460b d044d541-9046-4d49-8c39-2b67a3c18520 GIMAP4 55303 broad.mit.edu 36 7 149900208 149900208 + Silent SNP C C T novel none TCGA-09-2056-01B-01W-0722-08 TCGA-09-2056-11A-01W-0722-08 C C T T C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 62aa1fcd-44d8-427d-84f5-e936c3ed460b d044d541-9046-4d49-8c39-2b67a3c18520 CSPP1 79848 broad.mit.edu 36 8 68233900 68233900 + Missense_Mutation SNP G G C novel none TCGA-09-2056-01B-01W-0722-08 TCGA-09-2056-11A-01W-0722-08 G G C C G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 62aa1fcd-44d8-427d-84f5-e936c3ed460b d044d541-9046-4d49-8c39-2b67a3c18520 SULF1 23213 broad.mit.edu 36 8 70661237 70661237 + Missense_Mutation SNP C C G novel none TCGA-09-2056-01B-01W-0722-08 TCGA-09-2056-11A-01W-0722-08 C C G G C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 62aa1fcd-44d8-427d-84f5-e936c3ed460b d044d541-9046-4d49-8c39-2b67a3c18520 RNF19A 25897 broad.mit.edu 36 8 101351375 101351375 + Missense_Mutation SNP A A T novel none TCGA-09-2056-01B-01W-0722-08 TCGA-09-2056-11A-01W-0722-08 A A T T A A Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 62aa1fcd-44d8-427d-84f5-e936c3ed460b d044d541-9046-4d49-8c39-2b67a3c18520 PKHD1L1 93035 broad.mit.edu 36 8 110573368 110573368 + Nonsense_Mutation SNP T T G novel none TCGA-09-2056-01B-01W-0722-08 TCGA-09-2056-11A-01W-0722-08 T T G G T T Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 62aa1fcd-44d8-427d-84f5-e936c3ed460b d044d541-9046-4d49-8c39-2b67a3c18520 MID1 4281 broad.mit.edu 36 X 10397842 10397842 + Missense_Mutation SNP C C G novel none TCGA-09-2056-01B-01W-0722-08 TCGA-09-2056-11A-01W-0722-08 C C G G C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 62aa1fcd-44d8-427d-84f5-e936c3ed460b d044d541-9046-4d49-8c39-2b67a3c18520 ARAF 369 broad.mit.edu 36 X 47315352 47315352 + Silent SNP C C T novel none TCGA-09-2056-01B-01W-0722-08 TCGA-09-2056-11A-01W-0722-08 C C T T C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 62aa1fcd-44d8-427d-84f5-e936c3ed460b d044d541-9046-4d49-8c39-2b67a3c18520 KDM5C 8242 broad.mit.edu 36 X 53239375 53239375 + Missense_Mutation SNP G G A novel none TCGA-09-2056-01B-01W-0722-08 TCGA-09-2056-11A-01W-0722-08 G G A A G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 62aa1fcd-44d8-427d-84f5-e936c3ed460b d044d541-9046-4d49-8c39-2b67a3c18520 NXF2 56001 broad.mit.edu 36 X 101502189 101502189 + Missense_Mutation SNP G G T novel none TCGA-09-2056-01B-01W-0722-08 TCGA-09-2056-11A-01W-0722-08 G G T T G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 62aa1fcd-44d8-427d-84f5-e936c3ed460b d044d541-9046-4d49-8c39-2b67a3c18520 OVGP1 5016 broad.mit.edu 36 1 111765514 111765515 + Frame_Shift_Ins INS - A - novel none TCGA-09-2056-01B-01W-0722-08 TCGA-09-2056-11A-01W-0722-08 - - A A - - Unknown Valid Somatic Phase_I Capture Illumina_Capture Illumina GAIIx 62aa1fcd-44d8-427d-84f5-e936c3ed460b d044d541-9046-4d49-8c39-2b67a3c18520 COPB2 9276 broad.mit.edu 36 3 140560638 140560639 + Frame_Shift_Del DEL TG - TG novel none TCGA-09-2056-01B-01W-0722-08 TCGA-09-2056-11A-01W-0722-08 TG TG - - TG TG Unknown Valid Somatic Phase_I Capture Illumina_Capture Illumina GAIIx 62aa1fcd-44d8-427d-84f5-e936c3ed460b d044d541-9046-4d49-8c39-2b67a3c18520 ZFPM2 23414 broad.mit.edu 36 8 106884883 106884890 + Frame_Shift_Del DEL AACTTTAT - AACTTTAT novel none TCGA-09-2056-01B-01W-0722-08 TCGA-09-2056-11A-01W-0722-08 AACTTTAT AACTTTAT - - AACTTTAT AACTTTAT Unknown Valid Somatic Phase_I Capture Illumina_Capture Illumina GAIIx 62aa1fcd-44d8-427d-84f5-e936c3ed460b d044d541-9046-4d49-8c39-2b67a3c18520