Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error
ATXN7L2	127002	genome.wustl.edu	36	1	109835204	109835204	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0726-01A-01W-0372-09	TCGA-13-0726-10B-01W-0977-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	201415c2-5b5a-4bb8-8005-bf2c78d4d88e	df694f1a-e6a5-4c06-bf79-5fe57cfcba13	1	109835204	109835204	C	T	SNP	ATXN7L2	NM_153340	human	genbank	54_36p	1	validated	missense	c.1496	p.P499L	0.53	NULL	-	-	no_errors
LCE1A	353131	genome.wustl.edu	36	1	151066620	151066620	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0726-01A-01W-0372-09	TCGA-13-0726-10B-01W-0977-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	201415c2-5b5a-4bb8-8005-bf2c78d4d88e	df694f1a-e6a5-4c06-bf79-5fe57cfcba13	1	151066620	151066620	C	T	SNP	LCE1A	NM_178348	human	genbank	54_36p	1	validated	silent	c.48	p.C16	0.86	NULL	-	-	no_errors
ATF6	22926	genome.wustl.edu	36	1	160002790	160002790	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0726-01A-01W-0372-09	TCGA-13-0726-10B-01W-0977-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	201415c2-5b5a-4bb8-8005-bf2c78d4d88e	df694f1a-e6a5-4c06-bf79-5fe57cfcba13	1	160002790	160002790	G	A	SNP	ATF6	NM_007348	human	genbank	54_36p	1	validated	missense	c.16	p.G6R		NULL	-	-	no_errors
BAT2L2	23215	genome.wustl.edu	36	1	169802148	169802148	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0726-01A-01W-0372-09	TCGA-13-0726-10B-01W-0977-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	201415c2-5b5a-4bb8-8005-bf2c78d4d88e	df694f1a-e6a5-4c06-bf79-5fe57cfcba13	1	169802148	169802148	G	C	SNP	BAT2D1	ENST00000392080	human	ensembl	54_36p	1	known	missense	c.6264	p.Q2088H	1	NULL	-	-	no_errors
SLC45A3	85414	genome.wustl.edu	36	1	203898728	203898728	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0726-01A-01W-0372-09	TCGA-13-0726-10B-01W-0977-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	201415c2-5b5a-4bb8-8005-bf2c78d4d88e	df694f1a-e6a5-4c06-bf79-5fe57cfcba13	1	203898728	203898728	G	C	SNP	SLC45A3	NM_033102	human	genbank	54_36p	-1	validated	missense	c.814	p.R272G	0.998	NULL	HMMPfam_MFS_1,superfamily_MFS general substrate transporter	-	no_errors
TRIM17	51127	genome.wustl.edu	36	1	226662587	226662587	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0726-01A-01W-0372-09	TCGA-13-0726-10B-01W-0977-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	201415c2-5b5a-4bb8-8005-bf2c78d4d88e	df694f1a-e6a5-4c06-bf79-5fe57cfcba13	1	226662587	226662587	G	T	SNP	TRIM17	NM_001024940	human	genbank	54_36p	-1	reviewed	missense	c.1372	p.L458M	0.97	HMMPfam_SPRY	HMMPfam_zf-B_box;HMMPfam_zf-C3HC4;HMMPfam_SPRY;superfamily_RING/U-box	-	no_errors
OR2T35	403244	genome.wustl.edu	36	1	246868520	246868520	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0726-01A-01W-0372-09	TCGA-13-0726-10B-01W-0977-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	201415c2-5b5a-4bb8-8005-bf2c78d4d88e	df694f1a-e6a5-4c06-bf79-5fe57cfcba13	1	246868520	246868520	G	A	SNP	OR2T35	NM_001001827	human	genbank	54_36p	-1	provisional	silent	c.663	p.I221	0.42	NULL	-	-	no_errors
OPRD1	4985	genome.wustl.edu	36	1	29058393	29058393	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0726-01A-01W-0372-09	TCGA-13-0726-10B-01W-0977-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	201415c2-5b5a-4bb8-8005-bf2c78d4d88e	df694f1a-e6a5-4c06-bf79-5fe57cfcba13	1	29058393	29058393	C	A	SNP	OPRD1	NM_000911	human	genbank	54_36p	1	validated	missense	c.568	p.R190S	0.5	NULL	-	-	no_errors
LEPRE1	64175	genome.wustl.edu	36	1	42996119	42996119	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0726-01A-01W-0372-09	TCGA-13-0726-10B-01W-0977-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	201415c2-5b5a-4bb8-8005-bf2c78d4d88e	df694f1a-e6a5-4c06-bf79-5fe57cfcba13	1	42996119	42996119	G	A	SNP	LEPRE1	NM_022356	human	genbank	54_36p	-1	reviewed	silent	c.1002	p.D334	0.99	NULL	-	-	no_errors
SORCS3	22986	genome.wustl.edu	36	10	107012229	107012229	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0726-01A-01W-0372-09	TCGA-13-0726-10B-01W-0977-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	201415c2-5b5a-4bb8-8005-bf2c78d4d88e	df694f1a-e6a5-4c06-bf79-5fe57cfcba13	10	107012229	107012229	G	A	SNP	SORCS3	NM_014978	human	genbank	54_36p	1	reviewed	silent	c.3594	p.T1198	0.88	NULL	HMMPfam_PKD;superfamily_PKD domain;HMMPfam_BNR;superfamily_Oligoxyloglucan reducing end-specific cellobiohydrolase	-	no_errors
HABP2	3026	genome.wustl.edu	36	10	115328441	115328441	+	Nonsense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0726-01A-01W-0372-09	TCGA-13-0726-10B-01W-0977-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	201415c2-5b5a-4bb8-8005-bf2c78d4d88e	df694f1a-e6a5-4c06-bf79-5fe57cfcba13	10	115328441	115328441	C	T	SNP	HABP2	NM_004132	human	genbank	54_36p	1	reviewed	nonsense	c.634	p.Q212*	0.25	HMMPfam_Kringle	HMMPfam_Kringle;HMMPfam_Trypsin;HMMPfam_EGF;superfamily_Trypsin-like serine proteases;superfamily_Kringle-like;superfamily_EGF/Laminin	-	no_errors
SEC23IP	11196	genome.wustl.edu	36	10	121667951	121667951	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-13-0726-01A-01W-0372-09	TCGA-13-0726-10B-01W-0977-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	201415c2-5b5a-4bb8-8005-bf2c78d4d88e	df694f1a-e6a5-4c06-bf79-5fe57cfcba13	10	121667951	121667951	T	G	SNP	SEC23IP	NM_007190	human	genbank	54_36p	1	reviewed	missense	c.1810	p.C604G	0.06	NULL	HMMPfam_SAM_1;HMMPfam_DDHD;superfamily_SAM/Pointed domain	-	no_errors
EPC1	80314	genome.wustl.edu	36	10	32621530	32621530	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-13-0726-01A-01W-0372-09	TCGA-13-0726-10B-01W-0977-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	201415c2-5b5a-4bb8-8005-bf2c78d4d88e	df694f1a-e6a5-4c06-bf79-5fe57cfcba13	10	32621530	32621530	G	T	SNP	EPC1	NM_025209	human	genbank	54_36p	-1	provisional	silent	c.715	p.R239	1	NULL	HMMPfam_E_Pc_C	-	no_errors
PCDH15	65217	genome.wustl.edu	36	10	55238564	55238564	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0726-01A-01W-0372-09	TCGA-13-0726-10B-01W-0977-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	201415c2-5b5a-4bb8-8005-bf2c78d4d88e	df694f1a-e6a5-4c06-bf79-5fe57cfcba13	10	55238564	55238564	G	A	SNP	PCDH15	ENST00000395445	human	ensembl	54_36p	-1	known	missense	c.5252	p.S1751F		NULL	-	-	no_errors
PFKFB3	5209	genome.wustl.edu	36	10	6301630	6301630	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0726-01A-01W-0372-09	TCGA-13-0726-10B-01W-0977-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	201415c2-5b5a-4bb8-8005-bf2c78d4d88e	df694f1a-e6a5-4c06-bf79-5fe57cfcba13	10	6301630	6301630	C	G	SNP	PFKFB3	NM_004566	human	genbank	54_36p	1	validated	missense	c.591	p.S197R	1	HMMPfam_6PF2K	HMMPfam_PGAM;HMMPfam_6PF2K;superfamily_P-loop containing nucleoside triphosphate hydrolases;superfamily_Phosphoglycerate mutase-like	-	no_errors
LRRTM3	347731	genome.wustl.edu	36	10	68527509	68527509	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0726-01A-01W-0372-09	TCGA-13-0726-10B-01W-0977-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	201415c2-5b5a-4bb8-8005-bf2c78d4d88e	df694f1a-e6a5-4c06-bf79-5fe57cfcba13	10	68527509	68527509	C	A	SNP	LRRTM3	NM_178011	human	genbank	54_36p	1	validated	missense	c.1695	p.S565R	1	NULL	-	-	no_errors
SORBS1	10580	genome.wustl.edu	36	10	97086482	97086482	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0726-01A-01W-0372-09	TCGA-13-0726-10B-01W-0977-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	201415c2-5b5a-4bb8-8005-bf2c78d4d88e	df694f1a-e6a5-4c06-bf79-5fe57cfcba13	10	97086482	97086482	C	G	SNP	SORBS1	NM_001034954	human	genbank	54_36p	-1	validated	missense	c.3425	p.G1142A	0.86	NULL	HMMPfam_SH3_1;superfamily_SH3-domain;HMMPfam_Sorb	-	no_errors
ATM	472	genome.wustl.edu	36	11	107658692	107658692	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0726-01A-01W-0372-09	TCGA-13-0726-10B-01W-0977-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	201415c2-5b5a-4bb8-8005-bf2c78d4d88e	df694f1a-e6a5-4c06-bf79-5fe57cfcba13	11	107658692	107658692	G	C	SNP	ATM	NM_000051	human	genbank	54_36p	1	reviewed	missense	c.3622	p.D1208H	1	NULL	superfamily_Protein kinase-like (PK-like);superfamily_ARM repeat;PI3_PI4_kinase;HMMPfam_PI3_PI4_kinase;FAT;HMMPfam_FAT;FATC;HMMPfam_FATC	-	no_errors
KCNQ1	3784	genome.wustl.edu	36	11	2561263	2561263	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0726-01A-01W-0372-09	TCGA-13-0726-10B-01W-0977-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	201415c2-5b5a-4bb8-8005-bf2c78d4d88e	df694f1a-e6a5-4c06-bf79-5fe57cfcba13	11	2561263	2561263	A	T	SNP	KCNQ1	NM_000218	human	genbank	54_36p	1	reviewed	missense	c.944	p.Y315F	1	HMMPfam_Ion_trans	HMMPfam_Ion_trans;HMMPfam_KCNQ_channel;superfamily_Voltage-gated potassium channels	-	no_errors
OR4S1	256148	genome.wustl.edu	36	11	48285216	48285216	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0726-01A-01W-0372-09	TCGA-13-0726-10B-01W-0977-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	201415c2-5b5a-4bb8-8005-bf2c78d4d88e	df694f1a-e6a5-4c06-bf79-5fe57cfcba13	11	48285216	48285216	A	T	SNP	OR4S1	NM_001004725	human	genbank	54_36p	1	provisional	missense	c.866	p.N289I	0.33	NULL	-	-	no_errors
MS4A1	931	genome.wustl.edu	36	11	59986428	59986428	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0726-01A-01W-0372-09	TCGA-13-0726-10B-01W-0977-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	201415c2-5b5a-4bb8-8005-bf2c78d4d88e	df694f1a-e6a5-4c06-bf79-5fe57cfcba13	11	59986428	59986428	C	A	SNP	MS4A1	NM_021950	human	genbank	54_36p	1	reviewed	missense	c.5	p.T2K	0.98	NULL	HMMPfam_CD20	-	no_errors
RTN3	10313	genome.wustl.edu	36	11	63280187	63280187	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0726-01A-01W-0372-09	TCGA-13-0726-10B-01W-0977-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	201415c2-5b5a-4bb8-8005-bf2c78d4d88e	df694f1a-e6a5-4c06-bf79-5fe57cfcba13	11	63280187	63280187	G	A	SNP	RTN3	NM_201428	human	genbank	54_36p	1	validated	missense	c.2965	p.A989T	0.66	HMMPfam_Reticulon	HMMPfam_Reticulon	-	no_errors
RPS6KA4	8986	genome.wustl.edu	36	11	63885946	63885946	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0726-01A-01W-0372-09	TCGA-13-0726-10B-01W-0977-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	201415c2-5b5a-4bb8-8005-bf2c78d4d88e	df694f1a-e6a5-4c06-bf79-5fe57cfcba13	11	63885946	63885946	G	A	SNP	RPS6KA4	NM_003942	human	genbank	54_36p	1	reviewed	missense	c.802	p.V268M	1	HMMPfam_Pkinase	Pkinase;HMMPfam_Pkinase;Pkinase_C;HMMPfam_Pkinase_C;Protein kinase-like (PK-like);superfamily_Protein kinase-like (PK-like)	-	no_errors
USP35	57558	genome.wustl.edu	36	11	77594679	77594679	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-13-0726-01A-01W-0372-09	TCGA-13-0726-10B-01W-0977-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	201415c2-5b5a-4bb8-8005-bf2c78d4d88e	df694f1a-e6a5-4c06-bf79-5fe57cfcba13	11	77594679	77594679	C	G	SNP	USP35	NM_020798	human	genbank	54_36p	1	validated	silent	c.1341	p.G447	0.92	NULL	-	-	no_errors
DYRK2	8445	genome.wustl.edu	36	12	66338143	66338143	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0726-01A-01W-0372-09	TCGA-13-0726-10B-01W-0977-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	201415c2-5b5a-4bb8-8005-bf2c78d4d88e	df694f1a-e6a5-4c06-bf79-5fe57cfcba13	12	66338143	66338143	G	T	SNP	DYRK2	NM_006482	human	genbank	54_36p	1	reviewed	missense	c.1189	p.A397S	1	HMMPfam_Pkinase	HMMPfam_Pkinase;superfamily_Protein kinase-like (PK-like)	-	no_errors
TRPC4	7223	genome.wustl.edu	36	13	37123424	37123424	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0726-01A-01W-0372-09	TCGA-13-0726-10B-01W-0977-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	201415c2-5b5a-4bb8-8005-bf2c78d4d88e	df694f1a-e6a5-4c06-bf79-5fe57cfcba13	13	37123424	37123424	G	T	SNP	TRPC4	NM_016179	human	genbank	54_36p	-1	validated	missense	c.2057	p.P686Q	1	NULL	-	-	no_errors
GPR132	29933	genome.wustl.edu	36	14	104589053	104589053	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0726-01A-01W-0372-09	TCGA-13-0726-10B-01W-0977-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	201415c2-5b5a-4bb8-8005-bf2c78d4d88e	df694f1a-e6a5-4c06-bf79-5fe57cfcba13	14	104589053	104589053	G	A	SNP	GPR132	NM_013345	human	genbank	54_36p	-1	reviewed	missense	c.466	p.R156W		NULL	-	-	no_errors
SLC38A6	145389	genome.wustl.edu	36	14	60615398	60615398	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0726-01A-01W-0372-09	TCGA-13-0726-10B-01W-0977-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA		dbGAP	Illumina GAIIx	201415c2-5b5a-4bb8-8005-bf2c78d4d88e	df694f1a-e6a5-4c06-bf79-5fe57cfcba13	14	60615398	60615398	G	C	SNP	SLC38A6	ENST00000354886	human	ensembl	54_36p	1	known	missense	c.1408	p.G470R		NULL	HMMPfam_Aa_trans	-	no_errors
OR4F6	390648	genome.wustl.edu	36	15	100163773	100163773	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0726-01A-01W-0372-09	TCGA-13-0726-10B-01W-0977-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	201415c2-5b5a-4bb8-8005-bf2c78d4d88e	df694f1a-e6a5-4c06-bf79-5fe57cfcba13	15	100163773	100163773	A	T	SNP	OR4F6	NM_001005326	human	genbank	54_36p	1	provisional	missense	c.328	p.T110S		NULL	-	-	no_errors
TMEM87A	25963	genome.wustl.edu	36	15	40316920	40316920	+	Splice_Site	SNP	A	A	T	novel	Unknown	TCGA-13-0726-01A-01W-0372-09	TCGA-13-0726-10B-01W-0977-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	201415c2-5b5a-4bb8-8005-bf2c78d4d88e	df694f1a-e6a5-4c06-bf79-5fe57cfcba13	15	40316920	40316920	A	T	SNP	TMEM87A	NM_015497	human	genbank	54_36p	-1	validated	splice_site	c.868+2	e9+2	1	-	-	-	no_errors
TUBGCP4	27229	genome.wustl.edu	36	15	41459634	41459634	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0726-01A-01W-0372-09	TCGA-13-0726-10B-01W-0977-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	201415c2-5b5a-4bb8-8005-bf2c78d4d88e	df694f1a-e6a5-4c06-bf79-5fe57cfcba13	15	41459634	41459634	G	A	SNP	TUBGCP4	NM_014444	human	genbank	54_36p	1	provisional	missense	c.502	p.V168I	1	NULL	-	-	no_errors
TCF12	6938	genome.wustl.edu	36	15	55143311	55143311	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-0726-01A-01W-0372-09	TCGA-13-0726-10B-01W-0977-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	201415c2-5b5a-4bb8-8005-bf2c78d4d88e	df694f1a-e6a5-4c06-bf79-5fe57cfcba13	15	55143311	55143311	A	G	SNP	TCF12	NM_207036	human	genbank	54_36p	1	reviewed	missense	c.220	p.R74G	1	NULL	HLH;HMMPfam_HLH;HLH helix-loop-helix DNA-binding domain;superfamily_HLH helix-loop-helix DNA-binding domain	-	no_errors
LOC100130646	100130646	genome.wustl.edu	36	3	15150491	15150491	+	RNA	SNP	A	A	G	novel	Unknown	TCGA-13-0726-01A-01W-0372-09	TCGA-13-0726-10B-01W-0977-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	201415c2-5b5a-4bb8-8005-bf2c78d4d88e	df694f1a-e6a5-4c06-bf79-5fe57cfcba13	3	15150491	15150491	A	G	SNP	LOC100130646	XR_038601	human	genbank	54_36p	-1	model	rna	NULL	NULL	0.005	-	-	-	pseudogene
NLRC5	84166	genome.wustl.edu	36	16	55627535	55627535	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0726-01A-01W-0372-09	TCGA-13-0726-10B-01W-0977-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	201415c2-5b5a-4bb8-8005-bf2c78d4d88e	df694f1a-e6a5-4c06-bf79-5fe57cfcba13	16	55627535	55627535	G	A	SNP	NLRC5	NM_032206	human	genbank	54_36p	1	validated	missense	c.2650	p.D884N	0.98	HMMPfam_LRR_1	HMMPfam_LRR_1;HMMPfam_NACHT;superfamily_RNI-like;superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
CDC27	996	genome.wustl.edu	36	17	42576246	42576246	+	Splice_Site	SNP	A	A	G	novel	Unknown	TCGA-13-0726-01A-01W-0372-09	TCGA-13-0726-10B-01W-0977-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	201415c2-5b5a-4bb8-8005-bf2c78d4d88e	df694f1a-e6a5-4c06-bf79-5fe57cfcba13	17	42576246	42576246	A	G	SNP	CDC27	NM_001256	human	genbank	54_36p	-1	reviewed	splice_site	c.1170+2	e10+2	1	-	-	-	no_errors
MYST2	11143	genome.wustl.edu	36	17	45248246	45248246	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0726-01A-01W-0372-09	TCGA-13-0726-10B-01W-0977-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	201415c2-5b5a-4bb8-8005-bf2c78d4d88e	df694f1a-e6a5-4c06-bf79-5fe57cfcba13	17	45248246	45248246	G	C	SNP	MYST2	NM_007067	human	genbank	54_36p	1	provisional	missense	c.935	p.R312T	1	NULL	HMMPfam_zf-C2HC;HMMPfam_MOZ_SAS;superfamily_CCHHC domain;superfamily_Acyl-CoA N-acyltransferases (Nat)	-	no_errors
HLF	3131	genome.wustl.edu	36	17	50747721	50747721	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0726-01A-01W-0372-09	TCGA-13-0726-10B-01W-0977-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	201415c2-5b5a-4bb8-8005-bf2c78d4d88e	df694f1a-e6a5-4c06-bf79-5fe57cfcba13	17	50747721	50747721	C	G	SNP	HLF	NM_002126	human	genbank	54_36p	1	reviewed	missense	c.586	p.R196G	1	NULL	HMMPfam_bZIP_2	-	no_errors
UNK	85451	genome.wustl.edu	36	17	71327785	71327785	+	Splice_Site	SNP	G	G	C	novel	Unknown	TCGA-13-0726-01A-01W-0372-09	TCGA-13-0726-10B-01W-0977-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	201415c2-5b5a-4bb8-8005-bf2c78d4d88e	df694f1a-e6a5-4c06-bf79-5fe57cfcba13	17	71327785	71327785	G	C	SNP	UNK	NM_001080419	human	genbank	54_36p	1	provisional	splice_site	c.2065+1	e14+1	1	-	-	-	no_errors
RNF157	114804	genome.wustl.edu	36	17	71672458	71672458	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0726-01A-01W-0372-09	TCGA-13-0726-10B-01W-0977-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	201415c2-5b5a-4bb8-8005-bf2c78d4d88e	df694f1a-e6a5-4c06-bf79-5fe57cfcba13	17	71672458	71672458	G	T	SNP	RNF157	NM_052916	human	genbank	54_36p	-1	validated	missense	c.686	p.T229N	1	NULL	-	-	no_errors
TP53	7157	genome.wustl.edu	36	17	7517819	7517819	+	Missense_Mutation	SNP	G	G	A	rs28934574	Unknown	TCGA-13-0726-01A-01W-0372-09	TCGA-13-0726-10B-01W-0977-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	201415c2-5b5a-4bb8-8005-bf2c78d4d88e	df694f1a-e6a5-4c06-bf79-5fe57cfcba13	17	7517819	7517819	G	A	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	missense	c.844	p.R282W	1	HMMPfam_P53	superfamily_p53-like transcription factors;superfamily_p53 tetramerization domain;P53_tetramer;HMMPfam_P53_tetramer;P53;HMMPfam_P53;P53_TAD;HMMPfam_P53_TAD	-	no_errors
LPHN1	22859	genome.wustl.edu	36	19	14124354	14124354	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0726-01A-01W-0372-09	TCGA-13-0726-10B-01W-0977-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	201415c2-5b5a-4bb8-8005-bf2c78d4d88e	df694f1a-e6a5-4c06-bf79-5fe57cfcba13	19	14124354	14124354	G	C	SNP	LPHN1	NM_001008701	human	genbank	54_36p	-1	reviewed	missense	c.3510	p.I1170M	1	NULL	-	-	no_errors
KCNN1	3780	genome.wustl.edu	36	19	17961588	17961588	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0726-01A-01W-0372-09	TCGA-13-0726-10B-01W-0977-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	201415c2-5b5a-4bb8-8005-bf2c78d4d88e	df694f1a-e6a5-4c06-bf79-5fe57cfcba13	19	17961588	17961588	G	C	SNP	KCNN1	NM_002248	human	genbank	54_36p	1	reviewed	missense	c.1234	p.V412L	1	HMMPfam_CaMBD	HMMPfam_CaMBD;HMMPfam_SK_channel;HMMPfam_Ion_trans_2;superfamily_Voltage-gated potassium channels;superfamily_Small-conductance potassium channel	-	no_errors
C19orf2	8725	genome.wustl.edu	36	19	35193895	35193895	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0726-01A-01W-0372-09	TCGA-13-0726-10B-01W-0977-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	201415c2-5b5a-4bb8-8005-bf2c78d4d88e	df694f1a-e6a5-4c06-bf79-5fe57cfcba13	19	35193895	35193895	G	A	SNP	C19orf2	NM_003796	human	genbank	54_36p	1	reviewed	missense	c.1090	p.E364K	1	NULL	Prefoldin;HMMPfam_Prefoldin;superfamily_Prefoldin	-	no_errors
MUC16	94025	genome.wustl.edu	36	19	8859702	8859702	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0726-01A-01W-0372-09	TCGA-13-0726-10B-01W-0977-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	201415c2-5b5a-4bb8-8005-bf2c78d4d88e	df694f1a-e6a5-4c06-bf79-5fe57cfcba13	19	8859702	8859702	G	A	SNP	MUC16	NM_024690	human	genbank	54_36p	-1	validated	silent	c.40881	p.P13627		NULL	HMMPfam_SEA;superfamily_Immunoglobulin;superfamily_SEA domain	-	no_errors
SLC20A1	6574	genome.wustl.edu	36	2	113133017	113133017	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-0726-01A-01W-0372-09	TCGA-13-0726-10B-01W-0977-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	201415c2-5b5a-4bb8-8005-bf2c78d4d88e	df694f1a-e6a5-4c06-bf79-5fe57cfcba13	2	113133017	113133017	T	A	SNP	SLC20A1	NM_005415	human	genbank	54_36p	1	provisional	missense	c.923	p.L308H	0.27	NULL	-	-	no_errors
GLI2	2736	genome.wustl.edu	36	2	121458760	121458760	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0726-01A-01W-0372-09	TCGA-13-0726-10B-01W-0977-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	201415c2-5b5a-4bb8-8005-bf2c78d4d88e	df694f1a-e6a5-4c06-bf79-5fe57cfcba13	2	121458760	121458760	G	A	SNP	GLI2	NM_005270	human	genbank	54_36p	1	reviewed	missense	c.1927	p.V643I	0.69	NULL	HMMPfam_zf-C2H2;superfamily_Kazal-type serine protease inhibitors;superfamily_C2H2 and C2HC zinc fingers	-	no_errors
CNTNAP5	129684	genome.wustl.edu	36	2	124948826	124948826	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0726-01A-01W-0372-09	TCGA-13-0726-10B-01W-0977-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	201415c2-5b5a-4bb8-8005-bf2c78d4d88e	df694f1a-e6a5-4c06-bf79-5fe57cfcba13	2	124948826	124948826	C	T	SNP	CNTNAP5	NM_130773	human	genbank	54_36p	1	reviewed	missense	c.959	p.T320I	1	HMMPfam_Laminin_G_2	HMMPfam_F5_F8_type_C;HMMPfam_EGF;superfamily_Galactose-binding domain-like;superfamily_Concanavalin A-like lectins/glucanases;HMMPfam_Laminin_G_2;superfamily_Fibrinogen C-terminal domain-like	-	no_errors
POTEE	445582	genome.wustl.edu	36	2	131737909	131737909	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-0726-01A-01W-0372-09	TCGA-13-0726-10B-01W-0977-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	201415c2-5b5a-4bb8-8005-bf2c78d4d88e	df694f1a-e6a5-4c06-bf79-5fe57cfcba13	2	131737909	131737909	T	C	SNP	POTEE	NM_001083538	human	genbank	54_36p	1	validated	missense	c.2411	p.L804P	1	NULL	-	-	no_errors
LRP2	4036	genome.wustl.edu	36	2	169730764	169730764	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-13-0726-01A-01W-0372-09	TCGA-13-0726-10B-01W-0977-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	201415c2-5b5a-4bb8-8005-bf2c78d4d88e	df694f1a-e6a5-4c06-bf79-5fe57cfcba13	2	169730764	169730764	A	C	SNP	LRP2	NM_004525	human	genbank	54_36p	-1	validated	missense	c.11682	p.N3894K	1	HMMPfam_Ldl_recept_a	HMMPfam_Ldl_recept_b;HMMPfam_Ldl_recept_a;HMMPfam_EGF;superfamily_Growth factor receptor domain;HMMPfam_EGF_CA;HMMPfam_EGF_2;superfamily_EGF/Laminin;superfamily_LDL receptor-like module;superfamily_YWTD domain	-	no_errors
CCDC108	255101	genome.wustl.edu	36	2	219608465	219608465	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0726-01A-01W-0372-09	TCGA-13-0726-10B-01W-0977-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	201415c2-5b5a-4bb8-8005-bf2c78d4d88e	df694f1a-e6a5-4c06-bf79-5fe57cfcba13	2	219608465	219608465	G	A	SNP	CCDC108	NM_194302	human	genbank	54_36p	-1	provisional	missense	c.523	p.L175F	0.53	NULL	-	-	no_errors
MCEE	84693	genome.wustl.edu	36	2	71204994	71204994	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0726-01A-01W-0372-09	TCGA-13-0726-10B-01W-0977-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	201415c2-5b5a-4bb8-8005-bf2c78d4d88e	df694f1a-e6a5-4c06-bf79-5fe57cfcba13	2	71204994	71204994	C	T	SNP	MCEE	NM_032601	human	genbank	54_36p	-1	reviewed	silent	c.228	p.A76	0.05	HMMPfam_Glyoxalase	HMMPfam_Glyoxalase;superfamily_Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase	-	no_errors
KRTAP10-11	386678	genome.wustl.edu	36	21	44890836	44890836	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0726-01A-01W-0372-09	TCGA-13-0726-10B-01W-0977-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	201415c2-5b5a-4bb8-8005-bf2c78d4d88e	df694f1a-e6a5-4c06-bf79-5fe57cfcba13	21	44890836	44890836	C	T	SNP	KRTAP10-11	NM_198692	human	genbank	54_36p	1	validated	silent	c.33	p.S11	0.09	HMMPfam_Keratin_B2	HMMPfam_Keratin_B2	-	no_errors
LOC100128853	100128853	genome.wustl.edu	36	19	23467859	23467859	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-0726-01A-01W-0372-09	TCGA-13-0726-10B-01W-0977-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	201415c2-5b5a-4bb8-8005-bf2c78d4d88e	df694f1a-e6a5-4c06-bf79-5fe57cfcba13	19	23467859	23467859	T	A	SNP	LOC100128853	XM_001726893	human	genbank	54_36p	-1	model	missense	c.159	p.K53N	0.13	NULL	-	-	pseudogene
ZDHHC23	254887	genome.wustl.edu	36	3	115157899	115157899	+	Nonsense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0726-01A-01W-0372-09	TCGA-13-0726-10B-01W-0977-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	201415c2-5b5a-4bb8-8005-bf2c78d4d88e	df694f1a-e6a5-4c06-bf79-5fe57cfcba13	3	115157899	115157899	C	G	SNP	ZDHHC23	NM_173570	human	genbank	54_36p	1	validated	nonsense	c.896	p.S299*	1	HMMPfam_zf-DHHC	HMMPfam_zf-DHHC	-	no_errors
TOPBP1	11073	genome.wustl.edu	36	3	134845592	134845592	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0726-01A-01W-0372-09	TCGA-13-0726-10B-01W-0977-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	201415c2-5b5a-4bb8-8005-bf2c78d4d88e	df694f1a-e6a5-4c06-bf79-5fe57cfcba13	3	134845592	134845592	C	T	SNP	TOPBP1	NM_007027	human	genbank	54_36p	-1	reviewed	missense	c.1549	p.E517K	1	HMMPfam_BRCT	HMMPfam_BRCT;superfamily_Uteroglobin-like;superfamily_BRCT domain	-	no_errors
PA2G4P4	647033	genome.wustl.edu	36	3	158010580	158010580	+	RNA	SNP	G	G	A	novel	Unknown	TCGA-13-0726-01A-01W-0372-09	TCGA-13-0726-10B-01W-0977-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	201415c2-5b5a-4bb8-8005-bf2c78d4d88e	df694f1a-e6a5-4c06-bf79-5fe57cfcba13	3	158010580	158010580	G	A	SNP	PA2G4P4	NR_003284	human	genbank	54_36p	-1	provisional	rna	NULL	NULL	1	-	-	-	pseudogene
BRPF1	7862	genome.wustl.edu	36	3	9758744	9758744	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-13-0726-01A-01W-0372-09	TCGA-13-0726-10B-01W-0977-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	201415c2-5b5a-4bb8-8005-bf2c78d4d88e	df694f1a-e6a5-4c06-bf79-5fe57cfcba13	3	9758744	9758744	G	T	SNP	BRPF1	NM_001003694	human	genbank	54_36p	1	reviewed	silent	c.1890	p.L630	1	NULL	HMMPfam_PWWP;HMMPfam_Bromodomain;HMMPfam_PHD;superfamily_FYVE/PHD zinc finger;superfamily_Bromodomain;superfamily_C2H2 and C2HC zinc fingers;superfamily_Tudor/PWWP/MBT	-	no_errors
CTNNA1	1495	genome.wustl.edu	36	5	138146834	138146834	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0726-01A-01W-0372-09	TCGA-13-0726-10B-01W-0977-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	201415c2-5b5a-4bb8-8005-bf2c78d4d88e	df694f1a-e6a5-4c06-bf79-5fe57cfcba13	5	138146834	138146834	C	T	SNP	CTNNA1	NM_001903	human	genbank	54_36p	1	validated	missense	c.175	p.H59Y	1	HMMPfam_Vinculin	HMMPfam_Vinculin;superfamily_alpha-catenin/vinculin	-	no_errors
AGXT2	64902	genome.wustl.edu	36	5	35039672	35039672	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-0726-01A-01W-0372-09	TCGA-13-0726-10B-01W-0977-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	201415c2-5b5a-4bb8-8005-bf2c78d4d88e	df694f1a-e6a5-4c06-bf79-5fe57cfcba13	5	35039672	35039672	A	G	SNP	AGXT2	NM_031900	human	genbank	54_36p	-1	reviewed	missense	c.1390	p.C464R	1	NULL	HMMPfam_Aminotran_3;superfamily_PLP-dependent transferases	-	no_errors
PTPRK	5796	genome.wustl.edu	36	6	128547279	128547279	+	Nonsense_Mutation	SNP	T	A	T	novel	Unknown	TCGA-13-0726-01A-01W-0372-09	TCGA-13-0726-10B-01W-0977-09	T	T	A	T	T	T	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA		dbGAP	Illumina GAIIx	201415c2-5b5a-4bb8-8005-bf2c78d4d88e	df694f1a-e6a5-4c06-bf79-5fe57cfcba13	6	128547279	128547279	T	A	SNP	PTPRK	NM_002844	human	genbank	54_36p	-1	validated	nonsense	c.1153	p.K385*	1	NULL	superfamily_Fibronectin type III;superfamily_Immunoglobulin;superfamily_(Phosphotyrosine protein) phosphatases II;HMMPfam_Y_phosphatase;HMMPfam_MAM;HMMPfam_fn3;HMMPfam_ig	-	no_errors
GABBR1	2550	genome.wustl.edu	36	6	29685104	29685104	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-13-0726-01A-01W-0372-09	TCGA-13-0726-10B-01W-0977-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	201415c2-5b5a-4bb8-8005-bf2c78d4d88e	df694f1a-e6a5-4c06-bf79-5fe57cfcba13	6	29685104	29685104	G	C	SNP	GABBR1	NM_001470	human	genbank	54_36p	-1	reviewed	silent	c.1740	p.V580	1	NULL	HMMPfam_7tm_3;HMMPfam_Sushi;HMMPfam_ANF_receptor;superfamily_Periplasmic binding protein-like I;superfamily_Complement control module/SCR domain	-	no_errors
DDR1	780	genome.wustl.edu	36	6	30971186	30971186	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0726-01A-01W-0372-09	TCGA-13-0726-10B-01W-0977-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	201415c2-5b5a-4bb8-8005-bf2c78d4d88e	df694f1a-e6a5-4c06-bf79-5fe57cfcba13	6	30971186	30971186	C	T	SNP	DDR1	NM_013994	human	genbank	54_36p	1	reviewed	missense	c.1540	p.R514C	1	NULL	F5_F8_type_C;HMMPfam_F5_F8_type_C;Pkinase_Tyr;HMMPfam_Pkinase_Tyr	-	no_errors
MDN1	23195	genome.wustl.edu	36	6	90466042	90466042	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-0726-01A-01W-0372-09	TCGA-13-0726-10B-01W-0977-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	201415c2-5b5a-4bb8-8005-bf2c78d4d88e	df694f1a-e6a5-4c06-bf79-5fe57cfcba13	6	90466042	90466042	T	A	SNP	MDN1	NM_014611	human	genbank	54_36p	-1	provisional	missense	c.8996	p.K2999M	0.11	NULL	-	-	no_errors
ABCA13	154664	genome.wustl.edu	36	7	48256090	48256090	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0726-01A-01W-0372-09	TCGA-13-0726-10B-01W-0977-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	201415c2-5b5a-4bb8-8005-bf2c78d4d88e	df694f1a-e6a5-4c06-bf79-5fe57cfcba13	7	48256090	48256090	G	T	SNP	ABCA13	ENST00000319379	human	ensembl	54_36p	1	known	missense	c.1411	p.G471C	0.01	NULL	HMMPfam_ABC_tran;superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_start_codon
RRM2B	50484	genome.wustl.edu	36	8	103305502	103305502	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0726-01A-01W-0372-09	TCGA-13-0726-10B-01W-0977-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	201415c2-5b5a-4bb8-8005-bf2c78d4d88e	df694f1a-e6a5-4c06-bf79-5fe57cfcba13	8	103305502	103305502	C	G	SNP	RRM2B	NM_015713	human	genbank	54_36p	-1	validated	missense	c.498	p.K166N	1	HMMPfam_Ribonuc_red_sm	HMMPfam_Ribonuc_red_sm;superfamily_Ferritin-like	-	no_errors
ZNF7	7553	genome.wustl.edu	36	8	146039084	146039084	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-13-0726-01A-01W-0372-09	TCGA-13-0726-10B-01W-0977-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	201415c2-5b5a-4bb8-8005-bf2c78d4d88e	df694f1a-e6a5-4c06-bf79-5fe57cfcba13	8	146039084	146039084	T	C	SNP	ZNF7	NM_003416	human	genbank	54_36p	1	validated	silent	c.1788	p.L596		NULL	-	-	no_errors
TERF1	7013	genome.wustl.edu	36	8	74099610	74099610	+	Splice_Site	SNP	G	G	A	novel	Unknown	TCGA-13-0726-01A-01W-0372-09	TCGA-13-0726-10B-01W-0977-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	201415c2-5b5a-4bb8-8005-bf2c78d4d88e	df694f1a-e6a5-4c06-bf79-5fe57cfcba13	8	74099610	74099610	G	A	SNP	TERF1	NM_017489	human	genbank	54_36p	1	reviewed	splice_site	c.625-1	e5-1	1	-	-	-	no_errors
TTC39B	158219	genome.wustl.edu	36	9	15204172	15204172	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0726-01A-01W-0372-09	TCGA-13-0726-10B-01W-0977-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	201415c2-5b5a-4bb8-8005-bf2c78d4d88e	df694f1a-e6a5-4c06-bf79-5fe57cfcba13	9	15204172	15204172	G	T	SNP	TTC39B	NM_152574	human	genbank	54_36p	-1	provisional	missense	c.249	p.N83K	1	NULL	-	-	no_errors
ZNF658	26149	genome.wustl.edu	36	9	40763337	40763337	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0726-01A-01W-0372-09	TCGA-13-0726-10B-01W-0977-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	201415c2-5b5a-4bb8-8005-bf2c78d4d88e	df694f1a-e6a5-4c06-bf79-5fe57cfcba13	9	40763337	40763337	C	T	SNP	ZNF658	NM_033160	human	genbank	54_36p	-1	validated	silent	c.1938	p.K646	0	HMMPfam_zf-C2H2	HMMPfam_KRAB;HMMPfam_zf-C2H2;superfamily_KRAB domain (Kruppel-associated box Pfam 01352);superfamily_C2H2 and C2HC zinc fingers	-	no_errors
DOCK8	81704	genome.wustl.edu	36	9	408118	408118	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0726-01A-01W-0372-09	TCGA-13-0726-10B-01W-0977-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	201415c2-5b5a-4bb8-8005-bf2c78d4d88e	df694f1a-e6a5-4c06-bf79-5fe57cfcba13	9	408118	408118	G	C	SNP	DOCK8	NM_203447	human	genbank	54_36p	1	validated	missense	c.3547	p.G1183R	0.38	NULL	HMMPfam_Ded_cyto;superfamily_ARM repeat	-	no_errors
RAP2C	57826	genome.wustl.edu	36	X	131175969	131175969	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0726-01A-01W-0372-09	TCGA-13-0726-10B-01W-0977-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	201415c2-5b5a-4bb8-8005-bf2c78d4d88e	df694f1a-e6a5-4c06-bf79-5fe57cfcba13	X	131175969	131175969	C	G	SNP	RAP2C	NM_021183	human	genbank	54_36p	-1	provisional	missense	c.460	p.D154H	1	NULL	-	-	no_errors
HEPH	9843	genome.wustl.edu	36	X	65334415	65334415	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0726-01A-01W-0372-09	TCGA-13-0726-10B-01W-0977-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	201415c2-5b5a-4bb8-8005-bf2c78d4d88e	df694f1a-e6a5-4c06-bf79-5fe57cfcba13	X	65334415	65334415	C	T	SNP	HEPH	NM_014799	human	genbank	54_36p	1	reviewed	missense	c.866	p.P289L	1	NULL	-	-	no_errors
FAM155B	27112	genome.wustl.edu	36	X	68666246	68666246	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-0726-01A-01W-0372-09	TCGA-13-0726-10B-01W-0977-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	201415c2-5b5a-4bb8-8005-bf2c78d4d88e	df694f1a-e6a5-4c06-bf79-5fe57cfcba13	X	68666246	68666246	A	G	SNP	FAM155B	NM_015686	human	genbank	54_36p	1	validated	missense	c.1141	p.T381A	1	NULL	-	-	no_errors
CCDC136	64753	genome.wustl.edu	36	7	128237616	128237635	+	In_Frame_Del	DEL	ATTCCAAATTGGCTAAGTCC	ATTCCAAATTGGCTAAGTCC	TGTAA		Unknown	TCGA-13-0726-01A-01W-0372-09	TCGA-13-0726-10B-01W-0977-09	ATTCCAAATTGGCTAAGTCC	ATTCCAAATTGGCTAAGTCC	ATTCCAAATTGGCTAAGTCC	TGTAA	ATTCCAAATTGGCTAAGTCC	ATTCCAAATTGGCTAAGTCC	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	201415c2-5b5a-4bb8-8005-bf2c78d4d88e	df694f1a-e6a5-4c06-bf79-5fe57cfcba13	7	128237616	128237635	ATTCCAAATTGGCTAAGTCC	TGTAA	DEL	CCDC136	NM_022742	human	genbank	54_36p	1	validated	in_frame_del	c.1988_2005	p.DSKLAKS663in_frame_del	0.003:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.001:0.258:0.264:0.450:0.488:0.616:0.617	NULL	superfamily_Prefoldin,superfamily_Spectrin repeat	(deletion:cds_exon[128237429,128237656])	no_errors