Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error
TXNIP	10628	genome.wustl.edu	36	1	144151420	144151420	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-0755-01A-01W-0372-09	TCGA-13-0755-10A-01W-0372-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9bd227fa-e52a-4805-bd04-ad63df0930af	f96a9dfb-78a7-4c0d-adf1-d3125400cfa8	1	144151420	144151420	A	G	SNP	TXNIP	NM_006472	human	genbank	54_36p	1	validated	missense	c.497	p.K166R	1	NULL	-	-	no_errors
FLG	2312	genome.wustl.edu	36	1	150543537	150543537	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-13-0755-01A-01W-0372-09	TCGA-13-0755-10A-01W-0372-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9bd227fa-e52a-4805-bd04-ad63df0930af	f96a9dfb-78a7-4c0d-adf1-d3125400cfa8	1	150543537	150543537	T	G	SNP	FLG	NM_002016	human	genbank	54_36p	-1	provisional	missense	c.10449	p.R3483S		NULL	-	-	no_errors
TRIM46	80128	genome.wustl.edu	36	1	153421128	153421128	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0755-01A-01W-0372-09	TCGA-13-0755-10A-01W-0372-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9bd227fa-e52a-4805-bd04-ad63df0930af	f96a9dfb-78a7-4c0d-adf1-d3125400cfa8	1	153421128	153421128	C	G	SNP	TRIM46	NM_025058	human	genbank	54_36p	1	validated	missense	c.1765	p.Q589E	0.998	NULL	-	-	no_errors
YY1AP1	55249	genome.wustl.edu	36	1	153905118	153905118	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0755-01A-01W-0372-09	TCGA-13-0755-10A-01W-0372-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9bd227fa-e52a-4805-bd04-ad63df0930af	f96a9dfb-78a7-4c0d-adf1-d3125400cfa8	1	153905118	153905118	G	C	SNP	YY1AP1	NM_139118	human	genbank	54_36p	-1	reviewed	missense	c.941	p.T314S	0.12	NULL	-	-	no_errors
FCRL5	83416	genome.wustl.edu	36	1	155779292	155779292	+	Silent	SNP	A	A	C	novel	Unknown	TCGA-13-0755-01A-01W-0372-09	TCGA-13-0755-10A-01W-0372-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9bd227fa-e52a-4805-bd04-ad63df0930af	f96a9dfb-78a7-4c0d-adf1-d3125400cfa8	1	155779292	155779292	A	C	SNP	FCRL5	NM_031281	human	genbank	54_36p	-1	validated	silent	c.1104	p.A368		NULL	HMMPfam_ig;superfamily_Immunoglobulin	-	no_errors
USP21	27005	genome.wustl.edu	36	1	159398689	159398689	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0755-01A-01W-0372-09	TCGA-13-0755-10A-01W-0372-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9bd227fa-e52a-4805-bd04-ad63df0930af	f96a9dfb-78a7-4c0d-adf1-d3125400cfa8	1	159398689	159398689	C	T	SNP	USP21	ENST00000401988	human	ensembl	54_36p	1	known	missense	c.658	p.P220S	1	NULL	-	-	no_errors
AVPR1B	553	genome.wustl.edu	36	1	204391958	204391958	+	Frame_Shift_Del	DEL	A	A	-		Unknown	TCGA-13-0755-01A-01W-0372-09	TCGA-13-0755-10A-01W-0372-09	A	A	A	-	A	A	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9bd227fa-e52a-4805-bd04-ad63df0930af	f96a9dfb-78a7-4c0d-adf1-d3125400cfa8	1	204391958	204391958	A	-	DEL	AVPR1B	NM_000707	human	genbank	54_36p	1	reviewed	frame_shift_del	c.895	p.S299fs	1	NULL	-	(deletion:cds_exon[204391064,204392003])	no_errors
CD34	947	genome.wustl.edu	36	1	206128671	206128671	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0755-01A-01W-0372-09	TCGA-13-0755-10A-01W-0372-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9bd227fa-e52a-4805-bd04-ad63df0930af	f96a9dfb-78a7-4c0d-adf1-d3125400cfa8	1	206128671	206128671	C	G	SNP	CD34	NM_001025109	human	genbank	54_36p	-1	validated	missense	c.951	p.W317C	1	HMMPfam_CD34_antigen	HMMPfam_CD34_antigen	-	no_errors
RBM34	23029	genome.wustl.edu	36	1	233390906	233390906	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-13-0755-01A-01W-0372-09	TCGA-13-0755-10A-01W-0372-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9bd227fa-e52a-4805-bd04-ad63df0930af	f96a9dfb-78a7-4c0d-adf1-d3125400cfa8	1	233390906	233390906	A	G	SNP	RBM34	NM_015014	human	genbank	54_36p	-1	provisional	silent	c.138	p.G46		NULL	-	-	no_errors
CEP170	9859	genome.wustl.edu	36	1	241402644	241402644	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0755-01A-01W-0372-09	TCGA-13-0755-10A-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9bd227fa-e52a-4805-bd04-ad63df0930af	f96a9dfb-78a7-4c0d-adf1-d3125400cfa8	1	241402644	241402644	G	A	SNP	CEP170	NM_014812	human	genbank	54_36p	-1	reviewed	missense	c.1694	p.T565I	1	NULL	HMMPfam_FHA;superfamily_Fibronectin type III;superfamily_SMAD/FHA domain	-	no_errors
SPOCD1	90853	genome.wustl.edu	36	1	32036456	32036456	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-13-0755-01A-01W-0372-09	TCGA-13-0755-10A-01W-0372-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9bd227fa-e52a-4805-bd04-ad63df0930af	f96a9dfb-78a7-4c0d-adf1-d3125400cfa8	1	32036456	32036456	A	C	SNP	SPOCD1	NM_144569	human	genbank	54_36p	-1	provisional	missense	c.2084	p.M695R	1	NULL	-	-	no_errors
LOC729828	729828	genome.wustl.edu	36	1	81960068	81960068	+	RNA	SNP	G	G	A	novel	Unknown	TCGA-13-0755-01A-01W-0372-09	TCGA-13-0755-10A-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9bd227fa-e52a-4805-bd04-ad63df0930af	f96a9dfb-78a7-4c0d-adf1-d3125400cfa8	1	81960068	81960068	G	A	SNP	LOC729828	XR_015671	human	genbank	54_36p	1	model	rna	NULL	NULL	0.99	-	-	-	pseudogene
BARHL2	343472	genome.wustl.edu	36	1	90950709	90950709	+	Nonsense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0755-01A-01W-0372-09	TCGA-13-0755-10A-01W-0372-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9bd227fa-e52a-4805-bd04-ad63df0930af	f96a9dfb-78a7-4c0d-adf1-d3125400cfa8	1	90950709	90950709	G	C	SNP	BARHL2	NM_020063	human	genbank	54_36p	-1	validated	nonsense	c.912	p.Y304*	1	NULL	-	-	no_errors
GFRA1	2674	genome.wustl.edu	36	10	117874815	117874815	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0755-01A-01W-0372-09	TCGA-13-0755-10A-01W-0372-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9bd227fa-e52a-4805-bd04-ad63df0930af	f96a9dfb-78a7-4c0d-adf1-d3125400cfa8	10	117874815	117874815	C	A	SNP	GFRA1	NM_005264	human	genbank	54_36p	-1	reviewed	missense	c.677	p.R226L	1	HMMPfam_GDNF	HMMPfam_GDNF;superfamily_GDNF receptor-like (Pfam 02351)	-	no_errors
TACC2	10579	genome.wustl.edu	36	10	123837268	123837268	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0755-01A-01W-0372-09	TCGA-13-0755-10A-01W-0372-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9bd227fa-e52a-4805-bd04-ad63df0930af	f96a9dfb-78a7-4c0d-adf1-d3125400cfa8	10	123837268	123837268	G	T	SNP	TACC2	NM_206862	human	genbank	54_36p	1	reviewed	missense	c.5263	p.A1755S		NULL	HMMPfam_TACC	-	no_errors
PIH1D2	120379	genome.wustl.edu	36	11	111443833	111443833	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0755-01A-01W-0372-09	TCGA-13-0755-10A-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9bd227fa-e52a-4805-bd04-ad63df0930af	f96a9dfb-78a7-4c0d-adf1-d3125400cfa8	11	111443833	111443833	G	A	SNP	PIH1D2	NM_138789	human	genbank	54_36p	-1	validated	missense	c.920	p.T307M	0.42	NULL	-	-	no_errors
ROBO4	54538	genome.wustl.edu	36	11	124268986	124268986	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0755-01A-01W-0372-09	TCGA-13-0755-10A-01W-0372-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9bd227fa-e52a-4805-bd04-ad63df0930af	f96a9dfb-78a7-4c0d-adf1-d3125400cfa8	11	124268986	124268986	G	T	SNP	ROBO4	NM_019055	human	genbank	54_36p	-1	validated	missense	c.1484	p.A495D	0.019	NULL	-	-	no_errors
FEN1	2237	genome.wustl.edu	36	11	61320362	61320362	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0755-01A-01W-0372-09	TCGA-13-0755-10A-01W-0372-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9bd227fa-e52a-4805-bd04-ad63df0930af	f96a9dfb-78a7-4c0d-adf1-d3125400cfa8	11	61320362	61320362	A	T	SNP	FEN1	NM_004111	human	genbank	54_36p	1	reviewed	missense	c.953	p.E318V	1	NULL	HMMPfam_XPG_N;HMMPfam_XPG_I;superfamily_5' to 3' exonuclease C-terminal subdomain;superfamily_PIN domain-like	-	no_errors
GANAB	23193	genome.wustl.edu	36	11	62163677	62163677	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0755-01A-01W-0372-09	TCGA-13-0755-10A-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9bd227fa-e52a-4805-bd04-ad63df0930af	f96a9dfb-78a7-4c0d-adf1-d3125400cfa8	11	62163677	62163677	G	A	SNP	GANAB	NM_198335	human	genbank	54_36p	-1	validated	silent	c.141	p.C47	1	NULL	HMMPfam_Glyco_hydro_31;superfamily_(Trans)glycosidases	-	no_errors
ATP2A2	488	genome.wustl.edu	36	12	109204980	109204980	+	Silent	SNP	T	C	C	novel	Unknown	TCGA-13-0755-01A-01W-0372-09	TCGA-13-0755-10A-01W-0372-09	T	T	C	C	T	T	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	9bd227fa-e52a-4805-bd04-ad63df0930af	f96a9dfb-78a7-4c0d-adf1-d3125400cfa8	12	109204980	109204980	T	C	SNP	ATP2A2	NM_170665	human	genbank	54_36p	1	reviewed	silent	c.216	p.S72	1	HMMPfam_Cation_ATPase_N	superfamily_HAD-like;superfamily_Calcium ATPase transduction domain A;superfamily_Metal cation-transporting ATPase ATP-binding domain N;superfamily_Calcium ATPase transmembrane domain M;HMMPfam_Cation_ATPase_N;HMMPfam_Hydrolase;HMMPfam_Cation_ATPase_C;HMMPfam_E1-E2_ATPase	-	no_errors
SFSWAP	6433	genome.wustl.edu	36	12	130849938	130849938	+	Silent	SNP	C	C	T		Unknown	TCGA-13-0755-01A-01W-0372-09	TCGA-13-0755-10A-01W-0372-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9bd227fa-e52a-4805-bd04-ad63df0930af	f96a9dfb-78a7-4c0d-adf1-d3125400cfa8	12	130849938	130849938	C	T	SNP	SFRS8	NM_004592	human	genbank	54_36p	1	reviewed	silent	c.2808	p.V936	0.97	NULL	HMMPfam_Surp,superfamily_Surp module (SWAP domain Pfam 01805)	-	no_errors
FBXL14	144699	genome.wustl.edu	36	12	1572492	1572492	+	Silent	SNP	C	C	T		Unknown	TCGA-13-0755-01A-01W-0372-09	TCGA-13-0755-10A-01W-0372-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9bd227fa-e52a-4805-bd04-ad63df0930af	f96a9dfb-78a7-4c0d-adf1-d3125400cfa8	12	1572492	1572492	C	T	SNP	FBXL14	NM_152441	human	genbank	54_36p	-1	validated	silent	c.1002	p.T334	1	NULL	-	-	no_errors
ARID2	196528	genome.wustl.edu	36	12	44531669	44531669	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0755-01A-01W-0372-09	TCGA-13-0755-10A-01W-0372-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9bd227fa-e52a-4805-bd04-ad63df0930af	f96a9dfb-78a7-4c0d-adf1-d3125400cfa8	12	44531669	44531669	G	C	SNP	ARID2	NM_152641	human	genbank	54_36p	1	validated	missense	c.3496	p.G1166R	1	NULL	-	-	no_errors
RDH5	5959	genome.wustl.edu	36	12	54404013	54404013	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0755-01A-01W-0372-09	TCGA-13-0755-10A-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9bd227fa-e52a-4805-bd04-ad63df0930af	f96a9dfb-78a7-4c0d-adf1-d3125400cfa8	12	54404013	54404013	G	A	SNP	RDH5	NM_002905	human	genbank	54_36p	1	reviewed	missense	c.646	p.E216K	1	NULL	HMMPfam_adh_short;superfamily_NAD(P)-binding Rossmann-fold domains	-	no_errors
ATP5B	506	genome.wustl.edu	36	12	55325235	55325235	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-13-0755-01A-01W-0372-09	TCGA-13-0755-10A-01W-0372-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9bd227fa-e52a-4805-bd04-ad63df0930af	f96a9dfb-78a7-4c0d-adf1-d3125400cfa8	12	55325235	55325235	C	G	SNP	ATP5B	NM_001686	human	genbank	54_36p	-1	reviewed	silent	c.297	p.V99	1	HMMPfam_ATP-synt_ab_N	HMMPfam_ATP-synt_ab;HMMPfam_ATP-synt_ab_C;superfamily_C-terminal domain of alpha and beta subunits of F1 ATP synthase;HMMPfam_ATP-synt_ab_N;superfamily_N-terminal domain of alpha and beta subunits of F1 ATP synthase;superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
THSD1	55901	genome.wustl.edu	36	13	51870016	51870016	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0755-01A-01W-0372-09	TCGA-13-0755-10A-01W-0372-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9bd227fa-e52a-4805-bd04-ad63df0930af	f96a9dfb-78a7-4c0d-adf1-d3125400cfa8	13	51870016	51870016	C	A	SNP	THSD1	NM_018676	human	genbank	54_36p	-1	reviewed	missense	c.373	p.V125L	1	NULL	HMMPfam_TSP_1;superfamily_TSP-1 type 1 repeat	-	no_errors
ATP5S	27109	genome.wustl.edu	36	14	49862185	49862185	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0755-01A-01W-0372-09	TCGA-13-0755-10A-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9bd227fa-e52a-4805-bd04-ad63df0930af	f96a9dfb-78a7-4c0d-adf1-d3125400cfa8	14	49862185	49862185	G	A	SNP	ATP5S	NM_001003803	human	genbank	54_36p	1	reviewed	silent	c.642	p.L214	0.19	NULL	superfamily_RNI-like	-	no_errors
ATP5S	27109	genome.wustl.edu	36	14	49868648	49868648	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-13-0755-01A-01W-0372-09	TCGA-13-0755-10A-01W-0372-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9bd227fa-e52a-4805-bd04-ad63df0930af	f96a9dfb-78a7-4c0d-adf1-d3125400cfa8	14	49868648	49868648	G	T	SNP	ATP5S	ENST00000358473	human	ensembl	54_36p	1	known	silent	c.645	p.L215		NULL	superfamily_RNI-like	-	no_errors
SPTB	6710	genome.wustl.edu	36	14	64309076	64309076	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0755-01A-01W-0372-09	TCGA-13-0755-10A-01W-0372-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9bd227fa-e52a-4805-bd04-ad63df0930af	f96a9dfb-78a7-4c0d-adf1-d3125400cfa8	14	64309076	64309076	C	T	SNP	SPTB	NM_001024858	human	genbank	54_36p	-1	validated	missense	c.5528	p.R1843Q	0.99	HMMPfam_Spectrin	HMMPfam_CH;HMMPfam_PH;HMMPfam_Spectrin;superfamily_Spectrin repeat;superfamily_Calponin-homology domain CH-domain;superfamily_PH domain-like	-	no_errors
ENSG00000211729	0	genome.wustl.edu	36	7	141876211	141876211	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-0755-01A-01W-0372-09	TCGA-13-0755-10A-01W-0372-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9bd227fa-e52a-4805-bd04-ad63df0930af	f96a9dfb-78a7-4c0d-adf1-d3125400cfa8	7	141876211	141876211	A	G	SNP	ENSG00000211729	ENST00000390376	human	ensembl	54_36p	1	known	missense	c.272	p.D91G		NULL	-	-	no_stop_codon:bad_bp_length_for_coding_region
C15orf57	90416	genome.wustl.edu	36	15	38642302	38642302	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0755-01A-01W-0372-09	TCGA-13-0755-10A-01W-0372-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9bd227fa-e52a-4805-bd04-ad63df0930af	f96a9dfb-78a7-4c0d-adf1-d3125400cfa8	15	38642302	38642302	C	G	SNP	C15orf57	NM_001080791	human	genbank	54_36p	-1	validated	missense	c.232	p.A78P	1	NULL	-	-	no_errors
MYO5C	55930	genome.wustl.edu	36	15	50359100	50359100	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0755-01A-01W-0372-09	TCGA-13-0755-10A-01W-0372-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9bd227fa-e52a-4805-bd04-ad63df0930af	f96a9dfb-78a7-4c0d-adf1-d3125400cfa8	15	50359100	50359100	C	T	SNP	MYO5C	NM_018728	human	genbank	54_36p	-1	validated	missense	c.202	p.G68S	1	NULL	HMMPfam_IQ;HMMPfam_Myosin_head;HMMPfam_DIL;HMMPfam_Myosin_N;superfamily_Myosin S1 fragment N-terminal domain;superfamily_Hypothetical protein yfbM;superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
ANXA2	302	genome.wustl.edu	36	15	58436718	58436718	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-13-0755-01A-01W-0372-09	TCGA-13-0755-10A-01W-0372-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9bd227fa-e52a-4805-bd04-ad63df0930af	f96a9dfb-78a7-4c0d-adf1-d3125400cfa8	15	58436718	58436718	T	G	SNP	ANXA2	NM_001002858	human	genbank	54_36p	-1	reviewed	missense	c.421	p.T141P	1	HMMPfam_Annexin	HMMPfam_Annexin;superfamily_Annexin	-	no_errors
HERC1	8925	genome.wustl.edu	36	15	61751786	61751786	+	Silent	SNP	T	T	G	novel	Unknown	TCGA-13-0755-01A-01W-0372-09	TCGA-13-0755-10A-01W-0372-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9bd227fa-e52a-4805-bd04-ad63df0930af	f96a9dfb-78a7-4c0d-adf1-d3125400cfa8	15	61751786	61751786	T	G	SNP	HERC1	NM_003922	human	genbank	54_36p	-1	reviewed	silent	c.8007	p.A2669	0.94	NULL	HMMPfam_RCC1;HMMPfam_HECT;HMMPfam_WD40;HMMPfam_SPRY;superfamily_RCC1/BLIP-II;superfamily_WD40 repeat-like;superfamily_Hect E3 ligase catalytic domain	-	no_errors
WDR61	80349	genome.wustl.edu	36	15	76369034	76369034	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0755-01A-01W-0372-09	TCGA-13-0755-10A-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9bd227fa-e52a-4805-bd04-ad63df0930af	f96a9dfb-78a7-4c0d-adf1-d3125400cfa8	15	76369034	76369034	G	A	SNP	WDR61	NM_025234	human	genbank	54_36p	-1	provisional	missense	c.544	p.L182F	1	NULL	-	-	no_errors
ABCA3	21	genome.wustl.edu	36	16	2269010	2269010	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0755-01A-01W-0372-09	TCGA-13-0755-10A-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9bd227fa-e52a-4805-bd04-ad63df0930af	f96a9dfb-78a7-4c0d-adf1-d3125400cfa8	16	2269010	2269010	G	A	SNP	ABCA3	NM_001089	human	genbank	54_36p	-1	reviewed	silent	c.4482	p.C1494	0.99	HMMPfam_ABC_tran	HMMPfam_ABC_tran;superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
TMEM186	25880	genome.wustl.edu	36	16	8797350	8797350	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0755-01A-01W-0372-09	TCGA-13-0755-10A-01W-0372-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9bd227fa-e52a-4805-bd04-ad63df0930af	f96a9dfb-78a7-4c0d-adf1-d3125400cfa8	16	8797350	8797350	C	T	SNP	TMEM186	NM_015421	human	genbank	54_36p	-1	validated	missense	c.602	p.R201H		NULL	-	-	no_errors
GRIN2A	2903	genome.wustl.edu	36	16	9842061	9842061	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0755-01A-01W-0372-09	TCGA-13-0755-10A-01W-0372-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9bd227fa-e52a-4805-bd04-ad63df0930af	f96a9dfb-78a7-4c0d-adf1-d3125400cfa8	16	9842061	9842061	C	T	SNP	GRIN2A	NM_000833	human	genbank	54_36p	-1	reviewed	missense	c.1595	p.G532E	1	NULL	HMMPfam_Lig_chan;superfamily_Periplasmic binding protein-like I;superfamily_Periplasmic binding protein-like II	-	no_errors
CACNB1	782	genome.wustl.edu	36	17	34593507	34593507	+	Missense_Mutation	SNP	C	G	G	novel	Unknown	TCGA-13-0755-01A-01W-0372-09	TCGA-13-0755-10A-01W-0372-09	C	C	G	G	C	C	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	9bd227fa-e52a-4805-bd04-ad63df0930af	f96a9dfb-78a7-4c0d-adf1-d3125400cfa8	17	34593507	34593507	C	G	SNP	CACNB1	NM_000723	human	genbank	54_36p	-1	reviewed	missense	c.1035	p.K345N	1	HMMPfam_Ca_channel_B	HMMPfam_Ca_channel_B;HMMPfam_SH3_1;superfamily_SH3-domain;superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
B4GALNT2	124872	genome.wustl.edu	36	17	44601986	44601986	+	Missense_Mutation	SNP	C	A	A	novel	Unknown	TCGA-13-0755-01A-01W-0372-09	TCGA-13-0755-10A-01W-0372-09	C	C	A	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9bd227fa-e52a-4805-bd04-ad63df0930af	f96a9dfb-78a7-4c0d-adf1-d3125400cfa8	17	44601986	44601986	C	A	SNP	B4GALNT2	NM_153446	human	genbank	54_36p	1	provisional	missense	c.1598	p.A533D		NULL	-	-	no_errors
TP53	7157	genome.wustl.edu	36	17	7520037	7520037	+	Silent	SNP	C	C	A	rs55863639	Unknown	TCGA-13-0755-01A-01W-0372-09	TCGA-13-0755-10A-01W-0372-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9bd227fa-e52a-4805-bd04-ad63df0930af	f96a9dfb-78a7-4c0d-adf1-d3125400cfa8	17	7520037	7520037	C	A	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	silent	c.375	p.T125	1	HMMPfam_P53	superfamily_p53-like transcription factors;superfamily_p53 tetramerization domain;P53_tetramer;HMMPfam_P53_tetramer;P53;HMMPfam_P53;P53_TAD;HMMPfam_P53_TAD	-	no_errors
KRI1	65095	genome.wustl.edu	36	19	10531330	10531330	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-0755-01A-01W-0372-09	TCGA-13-0755-10A-01W-0372-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9bd227fa-e52a-4805-bd04-ad63df0930af	f96a9dfb-78a7-4c0d-adf1-d3125400cfa8	19	10531330	10531330	T	C	SNP	KRI1	NM_023008	human	genbank	54_36p	-1	validated	missense	c.1000	p.R334G	1	NULL	HMMPfam_Krr1	-	no_errors
USHBP1	83878	genome.wustl.edu	36	19	17228458	17228458	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0755-01A-01W-0372-09	TCGA-13-0755-10A-01W-0372-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9bd227fa-e52a-4805-bd04-ad63df0930af	f96a9dfb-78a7-4c0d-adf1-d3125400cfa8	19	17228458	17228458	C	T	SNP	USHBP1	NM_031941	human	genbank	54_36p	-1	validated	missense	c.1292	p.R431H	0.75	NULL	-	-	no_errors
ZNF585A	199704	genome.wustl.edu	36	19	42335087	42335087	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0755-01A-01W-0372-09	TCGA-13-0755-10A-01W-0372-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9bd227fa-e52a-4805-bd04-ad63df0930af	f96a9dfb-78a7-4c0d-adf1-d3125400cfa8	19	42335087	42335087	C	T	SNP	ZNF585A	NM_152655	human	genbank	54_36p	-1	validated	silent	c.1389	p.G463	0.96	NULL	HMMPfam_zf-C2H2;superfamily_C2H2 and C2HC zinc fingers	-	no_errors
ZNF614	80110	genome.wustl.edu	36	19	57212179	57212179	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0755-01A-01W-0372-09	TCGA-13-0755-10A-01W-0372-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9bd227fa-e52a-4805-bd04-ad63df0930af	f96a9dfb-78a7-4c0d-adf1-d3125400cfa8	19	57212179	57212179	C	T	SNP	ZNF614	NM_025040	human	genbank	54_36p	-1	validated	missense	c.484	p.E162K	0.02	NULL	HMMPfam_KRAB;HMMPfam_zf-C2H2;superfamily_KRAB domain (Kruppel-associated box Pfam 01352);superfamily_C2H2 and C2HC zinc fingers	-	no_errors
LASS4	79603	genome.wustl.edu	36	19	8228867	8228867	+	Silent	SNP	C	C	A		Unknown	TCGA-13-0755-01A-01W-0372-09	TCGA-13-0755-10A-01W-0372-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9bd227fa-e52a-4805-bd04-ad63df0930af	f96a9dfb-78a7-4c0d-adf1-d3125400cfa8	19	8228867	8228867	C	A	SNP	LASS4	NM_024552	human	genbank	54_36p	1	validated	silent	c.846	p.T282	0.78	NULL	-	-	no_errors
MUC16	94025	genome.wustl.edu	36	19	8854503	8854503	+	Nonsense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0755-01A-01W-0372-09	TCGA-13-0755-10A-01W-0372-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9bd227fa-e52a-4805-bd04-ad63df0930af	f96a9dfb-78a7-4c0d-adf1-d3125400cfa8	19	8854503	8854503	G	T	SNP	MUC16	NM_024690	human	genbank	54_36p	-1	validated	nonsense	c.41586	p.C13862*	0.37	HMMPfam_SEA	HMMPfam_SEA;superfamily_Immunoglobulin;superfamily_SEA domain	-	no_errors
NXPH2	11249	genome.wustl.edu	36	2	139145435	139145435	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0755-01A-01W-0372-09	TCGA-13-0755-10A-01W-0372-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9bd227fa-e52a-4805-bd04-ad63df0930af	f96a9dfb-78a7-4c0d-adf1-d3125400cfa8	2	139145435	139145435	A	T	SNP	NXPH2	NM_007226	human	genbank	54_36p	-1	validated	missense	c.322	p.F108I	1	HMMPfam_Neurexophilin	HMMPfam_Neurexophilin	-	no_errors
NXPH2	11249	genome.wustl.edu	36	2	139145697	139145697	+	Nonsense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0755-01A-01W-0372-09	TCGA-13-0755-10A-01W-0372-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9bd227fa-e52a-4805-bd04-ad63df0930af	f96a9dfb-78a7-4c0d-adf1-d3125400cfa8	2	139145697	139145697	A	T	SNP	NXPH2	NM_007226	human	genbank	54_36p	-1	validated	nonsense	c.60	p.C20*	1	HMMPfam_Neurexophilin	HMMPfam_Neurexophilin	-	no_errors
PKP4	8502	genome.wustl.edu	36	2	159227670	159227670	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0755-01A-01W-0372-09	TCGA-13-0755-10A-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9bd227fa-e52a-4805-bd04-ad63df0930af	f96a9dfb-78a7-4c0d-adf1-d3125400cfa8	2	159227670	159227670	G	A	SNP	PKP4	NM_003628	human	genbank	54_36p	1	reviewed	missense	c.2227	p.V743M	1	NULL	-	-	no_errors
BAZ2B	29994	genome.wustl.edu	36	2	159948437	159948437	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0755-01A-01W-0372-09	TCGA-13-0755-10A-01W-0372-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9bd227fa-e52a-4805-bd04-ad63df0930af	f96a9dfb-78a7-4c0d-adf1-d3125400cfa8	2	159948437	159948437	A	T	SNP	BAZ2B	NM_013450	human	genbank	54_36p	-1	validated	missense	c.3687	p.S1229R	1	NULL	-	-	no_errors
TTN	7273	genome.wustl.edu	36	2	179166415	179166415	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0755-01A-01W-0372-09	TCGA-13-0755-10A-01W-0372-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9bd227fa-e52a-4805-bd04-ad63df0930af	f96a9dfb-78a7-4c0d-adf1-d3125400cfa8	2	179166415	179166415	G	C	SNP	TTN	NM_133378	human	genbank	54_36p	-1	reviewed	missense	c.51061	p.Q17021E	1	NULL	-	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region
TTN	7273	genome.wustl.edu	36	2	179313341	179313341	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0755-01A-01W-0372-09	TCGA-13-0755-10A-01W-0372-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9bd227fa-e52a-4805-bd04-ad63df0930af	f96a9dfb-78a7-4c0d-adf1-d3125400cfa8	2	179313341	179313341	C	A	SNP	TTN	NM_133432	human	genbank	54_36p	-1	reviewed	missense	c.12150	p.E4050D	1	NULL	-	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region
ST13P2	344328	genome.wustl.edu	36	2	188398902	188398902	+	RNA	SNP	C	C	G	novel	Unknown	TCGA-13-0755-01A-01W-0372-09	TCGA-13-0755-10A-01W-0372-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9bd227fa-e52a-4805-bd04-ad63df0930af	f96a9dfb-78a7-4c0d-adf1-d3125400cfa8	2	188398902	188398902	C	G	SNP	LOC344328	XR_017370	human	genbank	54_36p	1	model	rna	NULL	NULL	1	-	-	-	pseudogene
ALS2CR11	151254	genome.wustl.edu	36	2	202138809	202138809	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0755-01A-01W-0372-09	TCGA-13-0755-10A-01W-0372-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9bd227fa-e52a-4805-bd04-ad63df0930af	f96a9dfb-78a7-4c0d-adf1-d3125400cfa8	2	202138809	202138809	G	T	SNP	ALS2CR11	NM_152525	human	genbank	54_36p	-1	validated	missense	c.865	p.P289T	1	NULL	-	-	no_errors
CCDC85A	114800	genome.wustl.edu	36	2	56273230	56273230	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0755-01A-01W-0372-09	TCGA-13-0755-10A-01W-0372-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9bd227fa-e52a-4805-bd04-ad63df0930af	f96a9dfb-78a7-4c0d-adf1-d3125400cfa8	2	56273230	56273230	C	T	SNP	CCDC85A	NM_001080433	human	genbank	54_36p	1	provisional	missense	c.391	p.R131C	1	NULL	-	-	no_errors
ASPRV1	151516	genome.wustl.edu	36	2	70042190	70042190	+	Frame_Shift_Del	DEL	T	T	-		Unknown	TCGA-13-0755-01A-01W-0372-09	TCGA-13-0755-10A-01W-0372-09	T	T	T	-	T	T	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9bd227fa-e52a-4805-bd04-ad63df0930af	f96a9dfb-78a7-4c0d-adf1-d3125400cfa8	2	70042190	70042190	T	-	DEL	ASPRV1	NM_152792	human	genbank	54_36p	-1	validated	frame_shift_del	c.135	p.V46fs	0	NULL	-	(deletion:cds_exon[70041293,70042324])	no_errors
TGM6	343641	genome.wustl.edu	36	20	2332442	2332442	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-0755-01A-01W-0372-09	TCGA-13-0755-10A-01W-0372-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	9bd227fa-e52a-4805-bd04-ad63df0930af	f96a9dfb-78a7-4c0d-adf1-d3125400cfa8	20	2332442	2332442	A	G	SNP	TGM6	NM_198994	human	genbank	54_36p	1	validated	missense	c.1309	p.I437V	1	NULL	-	-	no_errors
GSS	2937	genome.wustl.edu	36	20	32997502	32997502	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0755-01A-01W-0372-09	TCGA-13-0755-10A-01W-0372-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9bd227fa-e52a-4805-bd04-ad63df0930af	f96a9dfb-78a7-4c0d-adf1-d3125400cfa8	20	32997502	32997502	G	C	SNP	GSS	NM_000178	human	genbank	54_36p	-1	reviewed	missense	c.190	p.Q64E	1	HMMPfam_GSH_synth_ATP	HMMPfam_GSH_synthase;HMMPfam_GSH_synth_ATP;superfamily_PreATP-grasp domain;superfamily_Glutathione synthetase ATP-binding domain-like	-	no_errors
CHD6	84181	genome.wustl.edu	36	20	39507731	39507731	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0755-01A-01W-0372-09	TCGA-13-0755-10A-01W-0372-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9bd227fa-e52a-4805-bd04-ad63df0930af	f96a9dfb-78a7-4c0d-adf1-d3125400cfa8	20	39507731	39507731	C	T	SNP	CHD6	NM_032221	human	genbank	54_36p	-1	reviewed	missense	c.3865	p.V1289M	1	NULL	HMMPfam_SNF2_N;HMMPfam_Chromo;HMMPfam_Helicase_C;HMMPfam_TCH;superfamily_P-loop containing nucleoside triphosphate hydrolases;superfamily_Chromo domain-like	-	no_errors
KDM5B	10765	genome.wustl.edu	36	1	200978198	200978199	+	Frame_Shift_Ins	INS	-	C	C	novel	Unknown	TCGA-13-0755-01A-01W-0372-09	TCGA-13-0755-10A-01W-0372-09	-	-	C	C	-	-	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA		dbGAP	Illumina GAIIx	9bd227fa-e52a-4805-bd04-ad63df0930af	f96a9dfb-78a7-4c0d-adf1-d3125400cfa8	1	200978198	200978199	-	C	INS	JARID1B	NM_006618	human	genbank	54_36p	-1	validated	frame_shift_ins	c.2532	p.F844fs	0.98	HMMPfam_PLU-1	HMMPfam_ARID;HMMPfam_PHD;HMMPfam_JmjN;HMMPfam_zf-C5HC2;superfamily_FYVE/PHD zinc finger;HMMPfam_JmjC;HMMPfam_PLU-1;superfamily_ARID-like	-	no_errors
HLCS	3141	genome.wustl.edu	36	21	37231367	37231367	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0755-01A-01W-0372-09	TCGA-13-0755-10A-01W-0372-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9bd227fa-e52a-4805-bd04-ad63df0930af	f96a9dfb-78a7-4c0d-adf1-d3125400cfa8	21	37231367	37231367	C	T	SNP	HLCS	NM_000411	human	genbank	54_36p	-1	validated	missense	c.248	p.S83N		NULL	HMMPfam_BPL_C;HMMPfam_BPL_LipA_LipB;superfamily_Class II aaRS and biotin synthetases	-	no_errors
ZNF70	7621	genome.wustl.edu	36	22	22416469	22416469	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-0755-01A-01W-0372-09	TCGA-13-0755-10A-01W-0372-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9bd227fa-e52a-4805-bd04-ad63df0930af	f96a9dfb-78a7-4c0d-adf1-d3125400cfa8	22	22416469	22416469	T	C	SNP	ZNF70	NM_021916	human	genbank	54_36p	-1	provisional	missense	c.859	p.K287E	1	NULL	-	-	no_errors
SEC14L3	266629	genome.wustl.edu	36	22	29187550	29187550	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0755-01A-01W-0372-09	TCGA-13-0755-10A-01W-0372-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9bd227fa-e52a-4805-bd04-ad63df0930af	f96a9dfb-78a7-4c0d-adf1-d3125400cfa8	22	29187550	29187550	G	C	SNP	SEC14L3	NM_174975	human	genbank	54_36p	-1	reviewed	missense	c.903	p.C301W	1	HMMPfam_EMP24_GP25L	HMMPfam_EMP24_GP25L;HMMPfam_CRAL_TRIO;superfamily_CRAL/TRIO domain;HMMPfam_CRAL_TRIO_N;superfamily_CRAL/TRIO N-terminal domain;superfamily_Supernatant protein factor (SPF) C-terminal domain	-	no_errors
FBLN1	2192	genome.wustl.edu	36	22	44293295	44293295	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0755-01A-01W-0372-09	TCGA-13-0755-10A-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	9bd227fa-e52a-4805-bd04-ad63df0930af	f96a9dfb-78a7-4c0d-adf1-d3125400cfa8	22	44293295	44293295	G	A	SNP	FBLN1	NM_006486	human	genbank	54_36p	1	reviewed	missense	c.149	p.C50Y	1	HMMPfam_ANATO	HMMPfam_ANATO;HMMPfam_EGF_CA;superfamily_EGF/Laminin	-	no_errors
TRMU	55687	genome.wustl.edu	36	22	45121059	45121059	+	Silent	SNP	T	T	G	novel	Unknown	TCGA-13-0755-01A-01W-0372-09	TCGA-13-0755-10A-01W-0372-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9bd227fa-e52a-4805-bd04-ad63df0930af	f96a9dfb-78a7-4c0d-adf1-d3125400cfa8	22	45121059	45121059	T	G	SNP	TRMU	NM_018006	human	genbank	54_36p	1	reviewed	silent	c.432	p.V144		HMMPfam_tRNA_Me_trans	HMMPfam_tRNA_Me_trans;superfamily_Adenine nucleotide alpha hydrolases-like	-	no_errors
MYH15	22989	genome.wustl.edu	36	3	109678039	109678039	+	Silent	SNP	A	A	T	novel	Unknown	TCGA-13-0755-01A-01W-0372-09	TCGA-13-0755-10A-01W-0372-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9bd227fa-e52a-4805-bd04-ad63df0930af	f96a9dfb-78a7-4c0d-adf1-d3125400cfa8	3	109678039	109678039	A	T	SNP	MYH15	NM_014981	human	genbank	54_36p	-1	validated	silent	c.1188	p.A396	1	NULL	-	-	no_errors
SR140	23350	genome.wustl.edu	36	3	144239734	144239746	+	Frame_Shift_Del	DEL	GGGTGAGTAAAAG	GGGTGAGTAAAAG	-		Unknown	TCGA-13-0755-01A-01W-0372-09	TCGA-13-0755-10A-01W-0372-09	GGGTGAGTAAAAG	GGGTGAGTAAAAG	GGGTGAGTAAAAG	-	GGGTGAGTAAAAG	GGGTGAGTAAAAG	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9bd227fa-e52a-4805-bd04-ad63df0930af	f96a9dfb-78a7-4c0d-adf1-d3125400cfa8	3	144239734	144239746	GGGTGAGTAAAAG	-	DEL	SR140	NM_001080415	human	genbank	54_36p	1	provisional	frame_shift_del	c.2315_2317	p.Q772fs	1.000:1.000:1.000	NULL	-	(deletion:cds_exon[144239640,144239735], intron[144239736,144240425])	no_errors
MBNL1	4154	genome.wustl.edu	36	3	153500755	153500755	+	Nonsense_Mutation	SNP	C	G	G	novel	Unknown	TCGA-13-0755-01A-01W-0372-09	TCGA-13-0755-10A-01W-0372-09	C	C	G	G	C	C	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	9bd227fa-e52a-4805-bd04-ad63df0930af	f96a9dfb-78a7-4c0d-adf1-d3125400cfa8	3	153500755	153500755	C	G	SNP	MBNL1	NM_207293	human	genbank	54_36p	1	validated	nonsense	c.83	p.S28*	1	NULL	-	-	no_errors
ATP13A3	79572	genome.wustl.edu	36	3	195633836	195633836	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0755-01A-01W-0372-09	TCGA-13-0755-10A-01W-0372-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9bd227fa-e52a-4805-bd04-ad63df0930af	f96a9dfb-78a7-4c0d-adf1-d3125400cfa8	3	195633836	195633836	C	A	SNP	ATP13A3	NM_024524	human	genbank	54_36p	-1	validated	missense	c.2320	p.A774S	1	NULL	-	-	no_errors
LOC643634	643634	genome.wustl.edu	36	3	27649864	27649864	+	RNA	SNP	G	G	A	novel	Unknown	TCGA-13-0755-01A-01W-0372-09	TCGA-13-0755-10A-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9bd227fa-e52a-4805-bd04-ad63df0930af	f96a9dfb-78a7-4c0d-adf1-d3125400cfa8	3	27649864	27649864	G	A	SNP	LOC643634	XR_016808	human	genbank	54_36p	1	model	rna	NULL	NULL	1	-	-	-	pseudogene
RAD54L2	23132	genome.wustl.edu	36	3	51648655	51648655	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-13-0755-01A-01W-0372-09	TCGA-13-0755-10A-01W-0372-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9bd227fa-e52a-4805-bd04-ad63df0930af	f96a9dfb-78a7-4c0d-adf1-d3125400cfa8	3	51648655	51648655	A	C	SNP	RAD54L2	NM_015106	human	genbank	54_36p	1	validated	missense	c.1717	p.S573R	1	NULL	HMMPfam_SNF2_N;HMMPfam_Helicase_C;superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
KIAA1109	84162	genome.wustl.edu	36	4	123380667	123380667	+	Silent	SNP	T	T	A	novel	Unknown	TCGA-13-0755-01A-01W-0372-09	TCGA-13-0755-10A-01W-0372-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9bd227fa-e52a-4805-bd04-ad63df0930af	f96a9dfb-78a7-4c0d-adf1-d3125400cfa8	4	123380667	123380667	T	A	SNP	KIAA1109	NM_015312	human	genbank	54_36p	1	validated	silent	c.4380	p.P1460	1	NULL	-	-	no_errors
PROM1	8842	genome.wustl.edu	36	4	15629230	15629230	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0755-01A-01W-0372-09	TCGA-13-0755-10A-01W-0372-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9bd227fa-e52a-4805-bd04-ad63df0930af	f96a9dfb-78a7-4c0d-adf1-d3125400cfa8	4	15629230	15629230	G	T	SNP	PROM1	NM_006017	human	genbank	54_36p	-1	reviewed	missense	c.816	p.N272K	0.92	HMMPfam_Prominin	HMMPfam_Prominin	-	no_errors
DDX60L	91351	genome.wustl.edu	36	4	169552223	169552223	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0755-01A-01W-0372-09	TCGA-13-0755-10A-01W-0372-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9bd227fa-e52a-4805-bd04-ad63df0930af	f96a9dfb-78a7-4c0d-adf1-d3125400cfa8	4	169552223	169552223	C	G	SNP	DDX60L	NM_001012967	human	genbank	54_36p	-1	validated	missense	c.3778	p.V1260L	0.36	NULL	-	-	no_errors
OTOP1	133060	genome.wustl.edu	36	4	4250353	4250353	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0755-01A-01W-0372-09	TCGA-13-0755-10A-01W-0372-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9bd227fa-e52a-4805-bd04-ad63df0930af	f96a9dfb-78a7-4c0d-adf1-d3125400cfa8	4	4250353	4250353	C	T	SNP	OTOP1	NM_177998	human	genbank	54_36p	-1	provisional	missense	c.1109	p.R370Q	0.95	NULL	-	-	no_errors
MEGF10	84466	genome.wustl.edu	36	5	126786259	126786259	+	Splice_Site	SNP	A	A	T	novel	Unknown	TCGA-13-0755-01A-01W-0372-09	TCGA-13-0755-10A-01W-0372-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9bd227fa-e52a-4805-bd04-ad63df0930af	f96a9dfb-78a7-4c0d-adf1-d3125400cfa8	5	126786259	126786259	A	T	SNP	MEGF10	NM_032446	human	genbank	54_36p	1	validated	splice_site	c.1591-2	e12-2	1	-	-	-	no_errors
ANKHD1-EIF4EBP3	404734	genome.wustl.edu	36	5	139908732	139908732	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0755-01A-01W-0372-09	TCGA-13-0755-10A-01W-0372-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9bd227fa-e52a-4805-bd04-ad63df0930af	f96a9dfb-78a7-4c0d-adf1-d3125400cfa8	5	139908732	139908732	C	T	SNP	EIF4EBP3	NM_003732	human	genbank	54_36p	1	reviewed	missense	c.161	p.A54V	1	NULL	-	-	no_errors
YIPF5	81555	genome.wustl.edu	36	5	143520217	143520225	+	In_Frame_Del	DEL	TTGCTGTCC	TTGCTGTCC	-		Unknown	TCGA-13-0755-01A-01W-0372-09	TCGA-13-0755-10A-01W-0372-09	TTGCTGTCC	TTGCTGTCC	TTGCTGTCC	-	TTGCTGTCC	TTGCTGTCC	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9bd227fa-e52a-4805-bd04-ad63df0930af	f96a9dfb-78a7-4c0d-adf1-d3125400cfa8	5	143520217	143520225	TTGCTGTCC	-	DEL	YIPF5	NM_001024947	human	genbank	54_36p	-1	validated	in_frame_del	c.711_703	p.GQQ235in_frame_del	0.999:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000	NULL	-	(deletion:cds_exon[143520154,143520316])	no_errors
GRPEL2	134266	genome.wustl.edu	36	5	148708089	148708089	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0755-01A-01W-0372-09	TCGA-13-0755-10A-01W-0372-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9bd227fa-e52a-4805-bd04-ad63df0930af	f96a9dfb-78a7-4c0d-adf1-d3125400cfa8	5	148708089	148708089	G	C	SNP	GRPEL2	NM_152407	human	genbank	54_36p	1	validated	missense	c.139	p.E47Q	1	NULL	-	-	no_errors
KIF4B	285643	genome.wustl.edu	36	5	154374459	154374459	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0755-01A-01W-0372-09	TCGA-13-0755-10A-01W-0372-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9bd227fa-e52a-4805-bd04-ad63df0930af	f96a9dfb-78a7-4c0d-adf1-d3125400cfa8	5	154374459	154374459	G	T	SNP	KIF4B	NM_001099293	human	genbank	54_36p	1	provisional	missense	c.847	p.G283C	0.32	NULL	-	-	no_errors
LPA	4018	genome.wustl.edu	36	6	160976228	160976228	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0755-01A-01W-0372-09	TCGA-13-0755-10A-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9bd227fa-e52a-4805-bd04-ad63df0930af	f96a9dfb-78a7-4c0d-adf1-d3125400cfa8	6	160976228	160976228	G	A	SNP	LPA	NM_005577	human	genbank	54_36p	-1	validated	missense	c.992	p.T331M	0.04	NULL	-	-	no_errors
HIST1H3A	8350	genome.wustl.edu	36	6	26128756	26128756	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0755-01A-01W-0372-09	TCGA-13-0755-10A-01W-0372-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9bd227fa-e52a-4805-bd04-ad63df0930af	f96a9dfb-78a7-4c0d-adf1-d3125400cfa8	6	26128756	26128756	G	T	SNP	HIST1H3A	NM_003529	human	genbank	54_36p	1	reviewed	missense	c.60	p.Q20H	1	NULL	-	-	no_errors
OR12D3	81797	genome.wustl.edu	36	6	29450715	29450715	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0755-01A-01W-0372-09	TCGA-13-0755-10A-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9bd227fa-e52a-4805-bd04-ad63df0930af	f96a9dfb-78a7-4c0d-adf1-d3125400cfa8	6	29450715	29450715	G	A	SNP	OR12D3	NM_030959	human	genbank	54_36p	-1	provisional	missense	c.329	p.A110V		NULL	-	-	no_errors
NT5E	4907	genome.wustl.edu	36	6	86251818	86251818	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0755-01A-01W-0372-09	TCGA-13-0755-10A-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9bd227fa-e52a-4805-bd04-ad63df0930af	f96a9dfb-78a7-4c0d-adf1-d3125400cfa8	6	86251818	86251818	G	A	SNP	NT5E	NM_002526	human	genbank	54_36p	1	validated	missense	c.898	p.V300I	1	NULL	HMMPfam_5_nucleotid_C;superfamily_5'-nucleotidase (syn. UDP-sugar hydrolase) C-terminal domain;superfamily_Metallo-dependent phosphatases;HMMPfam_Metallophos	-	no_errors
CTTNBP2	83992	genome.wustl.edu	36	7	117211650	117211650	+	Silent	SNP	T	T	G	novel	Unknown	TCGA-13-0755-01A-01W-0372-09	TCGA-13-0755-10A-01W-0372-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9bd227fa-e52a-4805-bd04-ad63df0930af	f96a9dfb-78a7-4c0d-adf1-d3125400cfa8	7	117211650	117211650	T	G	SNP	CTTNBP2	NM_033427	human	genbank	54_36p	-1	reviewed	silent	c.2163	p.G721	1	NULL	-	-	no_errors
GRM8	2918	genome.wustl.edu	36	7	126670303	126670303	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-13-0755-01A-01W-0372-09	TCGA-13-0755-10A-01W-0372-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9bd227fa-e52a-4805-bd04-ad63df0930af	f96a9dfb-78a7-4c0d-adf1-d3125400cfa8	7	126670303	126670303	A	C	SNP	GRM8	NM_000845	human	genbank	54_36p	-1	reviewed	missense	c.192	p.C64W	1	NULL	-	-	no_errors
MLL3	58508	genome.wustl.edu	36	7	151593143	151593143	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-13-0755-01A-01W-0372-09	TCGA-13-0755-10A-01W-0372-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9bd227fa-e52a-4805-bd04-ad63df0930af	f96a9dfb-78a7-4c0d-adf1-d3125400cfa8	7	151593143	151593143	T	G	SNP	MLL3	NM_170606	human	genbank	54_36p	-1	reviewed	missense	c.1097	p.Y366S	1	HMMPfam_PHD	AT_hook;HMMPfam_AT_hook;HMG_box;HMMPfam_HMG_box;SET;HMMPfam_SET;PHD;HMMPfam_PHD;FYRN;HMMPfam_FYRN;FYRC;HMMPfam_FYRC	-	no_errors
STK31	56164	genome.wustl.edu	36	7	23741746	23741746	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0755-01A-01W-0372-09	TCGA-13-0755-10A-01W-0372-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9bd227fa-e52a-4805-bd04-ad63df0930af	f96a9dfb-78a7-4c0d-adf1-d3125400cfa8	7	23741746	23741746	C	G	SNP	STK31	NM_031414	human	genbank	54_36p	1	reviewed	missense	c.548	p.S183C	0.8	NULL	HMMPfam_Pkinase;HMMPfam_TUDOR;superfamily_Protein kinase-like (PK-like);superfamily_Staphylococcal nuclease;superfamily_Tudor/PWWP/MBT	-	no_errors
GRM3	2913	genome.wustl.edu	36	7	86306689	86306689	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-13-0755-01A-01W-0372-09	TCGA-13-0755-10A-01W-0372-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9bd227fa-e52a-4805-bd04-ad63df0930af	f96a9dfb-78a7-4c0d-adf1-d3125400cfa8	7	86306689	86306689	T	C	SNP	GRM3	NM_000840	human	genbank	54_36p	1	reviewed	silent	c.1923	p.C641	0.49	HMMPfam_7tm_3	HMMPfam_ANF_receptor;HMMPfam_NCD3G;superfamily_Periplasmic binding protein-like I;superfamily_TNF receptor-like;HMMPfam_7tm_3	-	no_errors
ASAP1	50807	genome.wustl.edu	36	8	131142205	131142205	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-13-0755-01A-01W-0372-09	TCGA-13-0755-10A-01W-0372-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9bd227fa-e52a-4805-bd04-ad63df0930af	f96a9dfb-78a7-4c0d-adf1-d3125400cfa8	8	131142205	131142205	C	G	SNP	ASAP1	NM_018482	human	genbank	54_36p	-1	validated	silent	c.2994	p.L998	1	NULL	HMMPfam_ArfGap;superfamily_Pyk2-associated protein beta ARF-GAP domain;HMMPfam_SH3_1;superfamily_SH3-domain;HMMPfam_PH;HMMPfam_Ank;superfamily_Ankyrin repeat;superfamily_PH domain-like	-	no_errors
SLC20A2	6575	genome.wustl.edu	36	8	42448973	42448973	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0755-01A-01W-0372-09	TCGA-13-0755-10A-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9bd227fa-e52a-4805-bd04-ad63df0930af	f96a9dfb-78a7-4c0d-adf1-d3125400cfa8	8	42448973	42448973	G	A	SNP	SLC20A2	NM_006749	human	genbank	54_36p	-1	provisional	silent	c.93	p.N31	1	NULL	-	-	no_errors
TOPORS	10210	genome.wustl.edu	36	9	32534141	32534141	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0755-01A-01W-0372-09	TCGA-13-0755-10A-01W-0372-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9bd227fa-e52a-4805-bd04-ad63df0930af	f96a9dfb-78a7-4c0d-adf1-d3125400cfa8	9	32534141	32534141	C	T	SNP	TOPORS	NM_005802	human	genbank	54_36p	-1	validated	missense	c.382	p.V128I	1	HMMPfam_zf-C3HC4	HMMPfam_zf-C3HC4;superfamily_RING/U-box	-	no_errors
CA9	768	genome.wustl.edu	36	9	35664151	35664151	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0755-01A-01W-0372-09	TCGA-13-0755-10A-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9bd227fa-e52a-4805-bd04-ad63df0930af	f96a9dfb-78a7-4c0d-adf1-d3125400cfa8	9	35664151	35664151	G	A	SNP	CA9	NM_001216	human	genbank	54_36p	1	reviewed	silent	c.195	p.L65	0.46	NULL	HMMPfam_Carb_anhydrase;superfamily_Carbonic anhydrase	-	no_errors
DOCK8	81704	genome.wustl.edu	36	9	362251	362251	+	Nonsense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0755-01A-01W-0372-09	TCGA-13-0755-10A-01W-0372-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9bd227fa-e52a-4805-bd04-ad63df0930af	f96a9dfb-78a7-4c0d-adf1-d3125400cfa8	9	362251	362251	A	T	SNP	DOCK8	NM_203447	human	genbank	54_36p	1	validated	nonsense	c.1870	p.K624*	1	NULL	HMMPfam_Ded_cyto;superfamily_ARM repeat	-	no_errors
MELK	9833	genome.wustl.edu	36	9	36641858	36641858	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0755-01A-01W-0372-09	TCGA-13-0755-10A-01W-0372-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9bd227fa-e52a-4805-bd04-ad63df0930af	f96a9dfb-78a7-4c0d-adf1-d3125400cfa8	9	36641858	36641858	C	T	SNP	MELK	NM_014791	human	genbank	54_36p	1	provisional	missense	c.1037	p.P346L	0.02	NULL	HMMPfam_Pkinase;HMMPfam_KA1;superfamily_Protein kinase-like (PK-like);superfamily_Kinase associated domain 1 KA1	-	no_errors
FAM75A3	727830	genome.wustl.edu	36	9	40694394	40694394	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0755-01A-01W-0372-09	TCGA-13-0755-10A-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	9bd227fa-e52a-4805-bd04-ad63df0930af	f96a9dfb-78a7-4c0d-adf1-d3125400cfa8	9	40694394	40694394	G	A	SNP	FAM75A3	NM_001083124	human	genbank	54_36p	1	predicted	missense	c.2051	p.R684K	0	NULL	-	-	no_errors
VSIG1	340547	genome.wustl.edu	36	X	107196873	107196873	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0755-01A-01W-0372-09	TCGA-13-0755-10A-01W-0372-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9bd227fa-e52a-4805-bd04-ad63df0930af	f96a9dfb-78a7-4c0d-adf1-d3125400cfa8	X	107196873	107196873	C	G	SNP	VSIG1	NM_182607	human	genbank	54_36p	1	provisional	missense	c.265	p.R89G	0.55	NULL	-	-	no_errors
DUSP9	1852	genome.wustl.edu	36	X	152568775	152568775	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0755-01A-01W-0372-09	TCGA-13-0755-10A-01W-0372-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9bd227fa-e52a-4805-bd04-ad63df0930af	f96a9dfb-78a7-4c0d-adf1-d3125400cfa8	X	152568775	152568775	A	T	SNP	DUSP9	NM_001395	human	genbank	54_36p	1	reviewed	missense	c.976	p.N326Y	1	HMMPfam_DSPc	HMMPfam_DSPc;superfamily_(Phosphotyrosine protein) phosphatases II;superfamily_Rhodanese/Cell cycle control phosphatase	-	no_errors
MPP1	4354	genome.wustl.edu	36	X	153673314	153673314	+	Silent	SNP	T	T	A	novel	Unknown	TCGA-13-0755-01A-01W-0372-09	TCGA-13-0755-10A-01W-0372-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9bd227fa-e52a-4805-bd04-ad63df0930af	f96a9dfb-78a7-4c0d-adf1-d3125400cfa8	X	153673314	153673314	T	A	SNP	MPP1	NM_002436	human	genbank	54_36p	-1	reviewed	silent	c.249	p.G83	0.98	NULL	-	-	no_errors
ENSG00000183704	0	genome.wustl.edu	36	Y	11960742	11960742	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0755-01A-01W-0372-09	TCGA-13-0755-10A-01W-0372-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	9bd227fa-e52a-4805-bd04-ad63df0930af	f96a9dfb-78a7-4c0d-adf1-d3125400cfa8	Y	11960742	11960742	G	A	SNP	ENSG00000183704	ENST00000331172	human	ensembl	54_36p	-1	known	nonsense	c.535	p.R179*	0.04	NULL	-	-	no_stop_codon