Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error
ILDR2	387597	genome.wustl.edu	36	1	165172558	165172558	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0765-01A-01W-0372-09	TCGA-13-0765-10A-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5bcfe3ea-d95e-47ff-9718-6b123d3acaef	8d32f44c-7848-4273-bb0b-e1ea995e552b	1	165172558	165172558	G	A	SNP	ILDR2	NM_199351	human	genbank	54_36p	-1	provisional	silent	c.597	p.L199	1	NULL	-	-	no_errors
ASTN1	460	genome.wustl.edu	36	1	175259324	175259324	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0765-01A-01W-0372-09	TCGA-13-0765-10A-01W-0372-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5bcfe3ea-d95e-47ff-9718-6b123d3acaef	8d32f44c-7848-4273-bb0b-e1ea995e552b	1	175259324	175259324	C	A	SNP	ASTN1	NM_004319	human	genbank	54_36p	-1	validated	missense	c.1277	p.R426L	1	NULL	superfamily_Fibronectin type III;superfamily_EGF/Laminin	-	no_errors
HMCN1	83872	genome.wustl.edu	36	1	184358857	184358857	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0765-01A-01W-0372-09	TCGA-13-0765-10A-01W-0372-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5bcfe3ea-d95e-47ff-9718-6b123d3acaef	8d32f44c-7848-4273-bb0b-e1ea995e552b	1	184358857	184358857	C	T	SNP	HMCN1	NM_031935	human	genbank	54_36p	1	reviewed	silent	c.12381	p.V4127	0.96	NULL	-	-	no_errors
MAP1LC3C	440738	genome.wustl.edu	36	1	240226291	240226291	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0765-01A-01W-0372-09	TCGA-13-0765-10A-01W-0372-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5bcfe3ea-d95e-47ff-9718-6b123d3acaef	8d32f44c-7848-4273-bb0b-e1ea995e552b	1	240226291	240226291	C	T	SNP	MAP1LC3C	NM_001004343	human	genbank	54_36p	-1	validated	missense	c.241	p.A81T	0.1	NULL	-	-	no_errors
LOC644743	644743	genome.wustl.edu	36	1	44342810	44342810	+	RNA	SNP	C	C	T	novel	Unknown	TCGA-13-0765-01A-01W-0372-09	TCGA-13-0765-10A-01W-0372-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5bcfe3ea-d95e-47ff-9718-6b123d3acaef	8d32f44c-7848-4273-bb0b-e1ea995e552b	1	44342810	44342810	C	T	SNP	LOC644743	XR_016703	human	genbank	54_36p	-1	model	rna	NULL	NULL	1	-	-	-	pseudogene
ATRNL1	26033	genome.wustl.edu	36	10	117144159	117144159	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0765-01A-01W-0372-09	TCGA-13-0765-10A-01W-0372-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5bcfe3ea-d95e-47ff-9718-6b123d3acaef	8d32f44c-7848-4273-bb0b-e1ea995e552b	10	117144159	117144159	C	G	SNP	ATRNL1	NM_207303	human	genbank	54_36p	1	validated	missense	c.3176	p.A1059G	1	NULL	HMMPfam_CUB;superfamily_Spermadhesin CUB domain;HMMPfam_Lectin_C;HMMPfam_Laminin_EGF;HMMPfam_PSI;HMMPfam_EGF;HMMPfam_Kelch_1;superfamily_Galactose oxidase central domain;HMMPfam_Kelch_2;HMMPfam_EGF_2;superfamily_Plexin repeat;superfamily_C-type lectin-like;superfamily_EGF/Laminin	-	no_errors
OR51I2	390064	genome.wustl.edu	36	11	5432027	5432027	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-0765-01A-01W-0372-09	TCGA-13-0765-10A-01W-0372-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5bcfe3ea-d95e-47ff-9718-6b123d3acaef	8d32f44c-7848-4273-bb0b-e1ea995e552b	11	5432027	5432027	A	G	SNP	OR51I2	NM_001004754	human	genbank	54_36p	1	provisional	missense	c.733	p.I245V	0.012	NULL	-	-	no_errors
RARRES3	5920	genome.wustl.edu	36	11	63063575	63063575	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0765-01A-01W-0372-09	TCGA-13-0765-10A-01W-0372-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5bcfe3ea-d95e-47ff-9718-6b123d3acaef	8d32f44c-7848-4273-bb0b-e1ea995e552b	11	63063575	63063575	G	T	SNP	RARRES3	NM_004585	human	genbank	54_36p	1	validated	missense	c.21	p.E7D		NULL	HMMPfam_NC	-	no_errors
TDG	6996	genome.wustl.edu	36	12	102903529	102903529	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0765-01A-01W-0372-09	TCGA-13-0765-10A-01W-0372-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5bcfe3ea-d95e-47ff-9718-6b123d3acaef	8d32f44c-7848-4273-bb0b-e1ea995e552b	12	102903529	102903529	C	T	SNP	TDG	NM_003211	human	genbank	54_36p	1	reviewed	missense	c.983	p.A328V	1	NULL	HMMPfam_UDG;superfamily_DNA glycosylase	-	no_errors
DNAJC14	85406	genome.wustl.edu	36	12	54508469	54508469	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0765-01A-01W-0372-09	TCGA-13-0765-10A-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5bcfe3ea-d95e-47ff-9718-6b123d3acaef	8d32f44c-7848-4273-bb0b-e1ea995e552b	12	54508469	54508469	G	A	SNP	DNAJC14	NM_032364	human	genbank	54_36p	-1	validated	missense	c.241	p.P81S	1	NULL	-	-	no_errors
GSX1	219409	genome.wustl.edu	36	13	27266002	27266002	+	Nonsense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0765-01A-01W-0372-09	TCGA-13-0765-10A-01W-0372-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5bcfe3ea-d95e-47ff-9718-6b123d3acaef	8d32f44c-7848-4273-bb0b-e1ea995e552b	13	27266002	27266002	A	T	SNP	GSX1	NM_145657	human	genbank	54_36p	1	provisional	nonsense	c.712	p.K238*	1	NULL	-	-	no_errors
ZNF592	9640	genome.wustl.edu	36	15	83128692	83128692	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0765-01A-01W-0372-09	TCGA-13-0765-10A-01W-0372-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5bcfe3ea-d95e-47ff-9718-6b123d3acaef	8d32f44c-7848-4273-bb0b-e1ea995e552b	15	83128692	83128692	C	T	SNP	ZNF592	NM_014630	human	genbank	54_36p	1	validated	silent	c.1782	p.D594	1	NULL	superfamily_C2H2 and C2HC zinc fingers;HMMPfam_zf-C2H2;superfamily_Multiheme cytochromes	-	no_errors
SCNN1G	6340	genome.wustl.edu	36	16	23113021	23113021	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0765-01A-01W-0372-09	TCGA-13-0765-10A-01W-0372-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5bcfe3ea-d95e-47ff-9718-6b123d3acaef	8d32f44c-7848-4273-bb0b-e1ea995e552b	16	23113021	23113021	C	T	SNP	SCNN1G	NM_001039	human	genbank	54_36p	1	validated	missense	c.838	p.H280Y	1	HMMPfam_ASC	HMMPfam_ASC	-	no_errors
PPL	5493	genome.wustl.edu	36	16	4877136	4877136	+	Splice_Site	SNP	C	C	T	novel	Unknown	TCGA-13-0765-01A-01W-0372-09	TCGA-13-0765-10A-01W-0372-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5bcfe3ea-d95e-47ff-9718-6b123d3acaef	8d32f44c-7848-4273-bb0b-e1ea995e552b	16	4877136	4877136	C	T	SNP	PPL	NM_002705	human	genbank	54_36p	-1	reviewed	splice_site	c.2607+1	e21+1	1	-	-	-	no_errors
GLG1	2734	genome.wustl.edu	36	16	73043497	73043497	+	Missense_Mutation	SNP	T	G	G	novel	Unknown	TCGA-13-0765-01A-01W-0372-09	TCGA-13-0765-10A-01W-0372-09	T	T	G	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5bcfe3ea-d95e-47ff-9718-6b123d3acaef	8d32f44c-7848-4273-bb0b-e1ea995e552b	16	73043497	73043497	T	G	SNP	GLG1	NM_012201	human	genbank	54_36p	-1	validated	missense	c.3570	p.K1190N	0.01	NULL	HMMPfam_Cys_rich_FGFR	-	no_errors
TP53	7157	genome.wustl.edu	36	17	7517871	7517872	+	In_Frame_Ins	INS	-	-	AGATTACCACTACTC	novel	Unknown	TCGA-13-0765-01A-01W-0372-09	TCGA-13-0765-10A-01W-0372-09	-	-	-	AGATTACCACTACTC	-	-	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	5bcfe3ea-d95e-47ff-9718-6b123d3acaef	8d32f44c-7848-4273-bb0b-e1ea995e552b	17	7517871	7517872	-	AGATTACCACTACTC	INS	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	in_frame_ins	c.792_791	p.265in_frame_insSSGNL	0.348:0.418	HMMPfam_P53	superfamily_p53-like transcription factors;superfamily_p53 tetramerization domain;P53_tetramer;HMMPfam_P53_tetramer;P53;HMMPfam_P53;P53_TAD;HMMPfam_P53_TAD	-	no_errors
ENSG00000215398	0	genome.wustl.edu	36	14	18188280	18188280	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0765-01A-01W-0372-09	TCGA-13-0765-10A-01W-0372-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5bcfe3ea-d95e-47ff-9718-6b123d3acaef	8d32f44c-7848-4273-bb0b-e1ea995e552b	14	18188280	18188280	C	T	SNP	ENSG00000215398	ENST00000400208	human	ensembl	54_36p	1	known	missense	c.619	p.R207C	0.024	NULL	-	-	no_start_codon
RFPL1S	10740	genome.wustl.edu	36	22	28163379	28163379	+	RNA	SNP	G	G	A	novel	Unknown	TCGA-13-0765-01A-01W-0372-09	TCGA-13-0765-10A-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5bcfe3ea-d95e-47ff-9718-6b123d3acaef	8d32f44c-7848-4273-bb0b-e1ea995e552b	22	28163379	28163379	G	A	SNP	RFPL1S	NR_002727	human	genbank	54_36p	-1	validated	rna	NULL	NULL	0	-	-	-	no_errors
CPZ	8532	genome.wustl.edu	36	4	8660021	8660023	+	In_Frame_Del	DEL	AGA	AGA	-	novel	Unknown	TCGA-13-0765-01A-01W-0372-09	TCGA-13-0765-10A-01W-0372-09	AGA	AGA	AGA	-	AGA	AGA	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5bcfe3ea-d95e-47ff-9718-6b123d3acaef	8d32f44c-7848-4273-bb0b-e1ea995e552b	4	8660021	8660023	AGA	-	DEL	CPZ	NM_001014447	human	genbank	54_36p	1	reviewed	in_frame_del	c.1196_1198	p.K400in_frame_del	0.997:0.977:0.997	NULL	-	(deletion:cds_exon[8659894;8660052])	no_errors
LOC642424	642424	genome.wustl.edu	36	10	42000954	42000954	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0765-01A-01W-0372-09	TCGA-13-0765-10A-01W-0372-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5bcfe3ea-d95e-47ff-9718-6b123d3acaef	8d32f44c-7848-4273-bb0b-e1ea995e552b	10	42000954	42000954	G	C	SNP	LOC642424	XM_001717196	human	genbank	54_36p	1	model	missense	c.413	p.R138T	0.84	NULL	-	-	no_errors
C6	729	genome.wustl.edu	36	5	41185273	41185273	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-0765-01A-01W-0372-09	TCGA-13-0765-10A-01W-0372-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5bcfe3ea-d95e-47ff-9718-6b123d3acaef	8d32f44c-7848-4273-bb0b-e1ea995e552b	5	41185273	41185273	T	C	SNP	C6	NM_000065	human	genbank	54_36p	-1	reviewed	missense	c.2450	p.K817R	0.998	HMMPfam_Kazal_2	HMMPfam_Sushi,TSP_1,HMMPfam_TSP_1,MACPF,HMMPfam_MACPF,Ldl_recept_a,HMMPfam_Ldl_recept_a,Kazal_2,HMMPfam_Kazal_2,Sushi	-	no_errors
PTPRN2	5799	genome.wustl.edu	36	7	157080742	157080742	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0765-01A-01W-0372-09	TCGA-13-0765-10A-01W-0372-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5bcfe3ea-d95e-47ff-9718-6b123d3acaef	8d32f44c-7848-4273-bb0b-e1ea995e552b	7	157080742	157080742	C	T	SNP	PTPRN2	NM_002847	human	genbank	54_36p	-1	reviewed	silent	c.2445	p.A815	0.69	HMMPfam_Y_phosphatase	HMMPfam_Y_phosphatase;superfamily_(Phosphotyrosine protein) phosphatases II	-	no_errors
ZNF479	90827	genome.wustl.edu	36	7	57191653	57191653	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0765-01A-01W-0372-09	TCGA-13-0765-10A-01W-0372-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5bcfe3ea-d95e-47ff-9718-6b123d3acaef	8d32f44c-7848-4273-bb0b-e1ea995e552b	7	57191653	57191653	C	T	SNP	ZNF479	NM_033273	human	genbank	54_36p	-1	provisional	missense	c.1411	p.G471S	1	NULL	-	-	no_errors
LIMK1	3984	genome.wustl.edu	36	7	73158455	73158455	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0765-01A-01W-0372-09	TCGA-13-0765-10A-01W-0372-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	5bcfe3ea-d95e-47ff-9718-6b123d3acaef	8d32f44c-7848-4273-bb0b-e1ea995e552b	7	73158455	73158455	C	A	SNP	LIMK1	NM_002314	human	genbank	54_36p	1	reviewed	missense	c.827	p.P276Q	0.27	NULL	HMMPfam_Pkinase;HMMPfam_PDZ;superfamily_PDZ domain-like;HMMPfam_LIM;superfamily_Protein kinase-like (PK-like);superfamily_Glucocorticoid receptor-like (DNA-binding domain)	-	no_errors
PI15	51050	genome.wustl.edu	36	8	75918788	75918788	+	Silent	SNP	T	T	A	novel	Unknown	TCGA-13-0765-01A-01W-0372-09	TCGA-13-0765-10A-01W-0372-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5bcfe3ea-d95e-47ff-9718-6b123d3acaef	8d32f44c-7848-4273-bb0b-e1ea995e552b	8	75918788	75918788	T	A	SNP	PI15	NM_015886	human	genbank	54_36p	1	reviewed	silent	c.291	p.L97	0.96	HMMPfam_SCP	SCP;HMMPfam_SCP;PR-1-like;superfamily_PR-1-like	-	no_errors
LPAR1	1902	genome.wustl.edu	36	9	112744091	112744091	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-0765-01A-01W-0372-09	TCGA-13-0765-10A-01W-0372-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5bcfe3ea-d95e-47ff-9718-6b123d3acaef	8d32f44c-7848-4273-bb0b-e1ea995e552b	9	112744091	112744091	T	C	SNP	LPAR1	NM_001401	human	genbank	54_36p	-1	reviewed	missense	c.224	p.Y75C	1	NULL	HMMPfam_7tm_1;superfamily_Family A G protein-coupled receptor-like	-	no_errors
CDC14B	8555	genome.wustl.edu	36	9	98305889	98305889	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0765-01A-01W-0372-09	TCGA-13-0765-10A-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5bcfe3ea-d95e-47ff-9718-6b123d3acaef	8d32f44c-7848-4273-bb0b-e1ea995e552b	9	98305889	98305889	G	A	SNP	CDC14B	NM_033331	human	genbank	54_36p	-1	reviewed	silent	c.1464	p.L488	1	NULL	HMMPfam_DSPc;superfamily_(Phosphotyrosine protein) phosphatases II	-	no_errors
ARMCX5	64860	genome.wustl.edu	36	X	101744756	101744756	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0765-01A-01W-0372-09	TCGA-13-0765-10A-01W-0372-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5bcfe3ea-d95e-47ff-9718-6b123d3acaef	8d32f44c-7848-4273-bb0b-e1ea995e552b	X	101744756	101744756	C	G	SNP	ARMCX5	NM_022838	human	genbank	54_36p	1	provisional	missense	c.1031	p.T344S	1	NULL	-	-	no_errors
CYLC1	1538	genome.wustl.edu	36	X	83015558	83015558	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-13-0765-01A-01W-0372-09	TCGA-13-0765-10A-01W-0372-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5bcfe3ea-d95e-47ff-9718-6b123d3acaef	8d32f44c-7848-4273-bb0b-e1ea995e552b	X	83015558	83015558	A	C	SNP	CYLC1	NM_021118	human	genbank	54_36p	1	provisional	missense	c.1186	p.K396Q	0.99	NULL	-	-	no_errors
SLC39A11	201266	genome.wustl.edu	36	17	68596423	68596424	+	Missense_Mutation	DNP	CC	CC	AG	novel	Unknown	TCGA-13-0765-01A-01W-0372-09	TCGA-13-0765-10A-01W-0372-09	CC	CC	CC	AG	CC	CC	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5bcfe3ea-d95e-47ff-9718-6b123d3acaef	8d32f44c-7848-4273-bb0b-e1ea995e552b	17	68596423	68596424	CC	AG	DNP	SLC39A11	NM_139177	human	genbank	54_36p	-1	provisional	missense	c.76_75	p.A26S	0.997:0.971	HMMPfam_Zip	HMMPfam_Zip	-	no_errors