Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error
C1orf194	127003	genome.wustl.edu	36	1	109457783	109457783	+	Missense_Mutation	SNP	C	C	A		Unknown	TCGA-13-0800-01A-01W-0372-09	TCGA-13-0800-10A-01W-0372-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	757862e3-0392-4e05-a242-25e3d2094ee8	7bd7b34c-778d-421d-b80e-17ecba029854	1	109457783	109457783	C	A	SNP	C1orf194	ENST00000369949	human	ensembl	54_36p	-1	known	missense	c.40	p.A14S	0.022	NULL	-	-	no_errors
PI4KB	5298	genome.wustl.edu	36	1	149555082	149555082	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-13-0800-01A-01W-0372-09	TCGA-13-0800-10A-01W-0372-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	757862e3-0392-4e05-a242-25e3d2094ee8	7bd7b34c-778d-421d-b80e-17ecba029854	1	149555082	149555082	A	C	SNP	PI4KB	NM_002651	human	genbank	54_36p	-1	provisional	missense	c.536	p.F179C	1	NULL	-	-	no_errors
LMNA	4000	genome.wustl.edu	36	1	154370932	154370932	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-0800-01A-01W-0372-09	TCGA-13-0800-10A-01W-0372-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	757862e3-0392-4e05-a242-25e3d2094ee8	7bd7b34c-778d-421d-b80e-17ecba029854	1	154370932	154370932	A	G	SNP	LMNA	NM_170707	human	genbank	54_36p	1	reviewed	missense	c.628	p.I210V	1	HMMPfam_Filament	HMMPfam_IF_tail,HMMPfam_Filament,superfamily_Prefoldin,superfamily_Lamin A/C globular tail domain	-	no_errors
SPEN	23013	genome.wustl.edu	36	1	16073415	16073415	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-13-0800-01A-01W-0372-09	TCGA-13-0800-10A-01W-0372-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	757862e3-0392-4e05-a242-25e3d2094ee8	7bd7b34c-778d-421d-b80e-17ecba029854	1	16073415	16073415	T	C	SNP	SPEN	ENST00000375753	human	ensembl	54_36p	1	known	silent	c.219	p.Y73	1	NULL	-	-	no_stop_codon
NUAK2	81788	genome.wustl.edu	36	1	203539936	203539936	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0800-01A-01W-0372-09	TCGA-13-0800-10A-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	757862e3-0392-4e05-a242-25e3d2094ee8	7bd7b34c-778d-421d-b80e-17ecba029854	1	203539936	203539936	G	A	SNP	NUAK2	NM_030952	human	genbank	54_36p	-1	provisional	silent	c.1152	p.A384	1	NULL	HMMPfam_Pkinase;superfamily_Protein kinase-like (PK-like)	-	no_errors
LOC729708	729708	genome.wustl.edu	36	1	76938324	76938324	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0800-01A-01W-0372-09	TCGA-13-0800-10A-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	757862e3-0392-4e05-a242-25e3d2094ee8	7bd7b34c-778d-421d-b80e-17ecba029854	1	76938324	76938324	G	A	SNP	LOC729708	XM_001133949	human	genbank	54_36p	1	model	missense	c.263	p.R88K	1	NULL	-	-	pseudogene
BMS1	9790	genome.wustl.edu	36	10	42645856	42645856	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0800-01A-01W-0372-09	TCGA-13-0800-10A-01W-0372-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	757862e3-0392-4e05-a242-25e3d2094ee8	7bd7b34c-778d-421d-b80e-17ecba029854	10	42645856	42645856	C	G	SNP	BMS1	NM_014753	human	genbank	54_36p	1	reviewed	missense	c.3598	p.R1200G	0.95	NULL	HMMPfam_DUF663;HMMPfam_AARP2CN;superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
HINFP	25988	genome.wustl.edu	36	11	118506671	118506671	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0800-01A-01W-0372-09	TCGA-13-0800-10A-01W-0372-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	757862e3-0392-4e05-a242-25e3d2094ee8	7bd7b34c-778d-421d-b80e-17ecba029854	11	118506671	118506671	G	C	SNP	HINFP	NM_015517	human	genbank	54_36p	1	validated	missense	c.208	p.E70Q	1	NULL	HMMPfam_zf-C2H2;superfamily_C2H2 and C2HC zinc fingers	-	no_errors
OR51A4	401666	genome.wustl.edu	36	11	4924258	4924258	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0800-01A-01W-0372-09	TCGA-13-0800-10A-01W-0372-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	757862e3-0392-4e05-a242-25e3d2094ee8	7bd7b34c-778d-421d-b80e-17ecba029854	11	4924258	4924258	C	A	SNP	OR51A4	NM_001005329	human	genbank	54_36p	-1	provisional	missense	c.649	p.V217L		NULL	-	-	no_errors
TCIRG1	10312	genome.wustl.edu	36	11	67571713	67571713	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-13-0800-01A-01W-0372-09	TCGA-13-0800-10A-01W-0372-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	757862e3-0392-4e05-a242-25e3d2094ee8	7bd7b34c-778d-421d-b80e-17ecba029854	11	67571713	67571713	C	A	SNP	TCIRG1	NM_006019	human	genbank	54_36p	1	reviewed	silent	c.1329	p.G443	1	HMMPfam_V_ATPase_I	HMMPfam_V_ATPase_I	-	no_errors
LARP4	113251	genome.wustl.edu	36	12	49147018	49147018	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0800-01A-01W-0372-09	TCGA-13-0800-10A-01W-0372-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	757862e3-0392-4e05-a242-25e3d2094ee8	7bd7b34c-778d-421d-b80e-17ecba029854	12	49147018	49147018	C	T	SNP	LARP4	NM_199188	human	genbank	54_36p	1	validated	missense	c.1411	p.P471S	0.26	NULL	"HMMPfam_La;superfamily_""Winged helix"" DNA-binding domain;superfamily_RNA-binding domain RBD"	-	no_errors
ITGA7	3679	genome.wustl.edu	36	12	54373249	54373249	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0800-01A-01W-0372-09	TCGA-13-0800-10A-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	757862e3-0392-4e05-a242-25e3d2094ee8	7bd7b34c-778d-421d-b80e-17ecba029854	12	54373249	54373249	G	A	SNP	ITGA7	NM_002206	human	genbank	54_36p	-1	reviewed	silent	c.2655	p.G885	0.99	HMMPfam_Integrin_alpha2	HMMPfam_Integrin_alpha;HMMPfam_FG-GAP;HMMPfam_Integrin_alpha2;superfamily_Integrin domains;superfamily_Integrin alpha N-terminal domain	-	no_errors
LGR5	8549	genome.wustl.edu	36	12	70264197	70264197	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0800-01A-01W-0372-09	TCGA-13-0800-10A-01W-0372-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	757862e3-0392-4e05-a242-25e3d2094ee8	7bd7b34c-778d-421d-b80e-17ecba029854	12	70264197	70264197	C	A	SNP	LGR5	NM_003667	human	genbank	54_36p	1	provisional	missense	c.2140	p.P714T	1	NULL	-	-	no_errors
DCT	1638	genome.wustl.edu	36	13	93929317	93929317	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0800-01A-01W-0372-09	TCGA-13-0800-10A-01W-0372-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	757862e3-0392-4e05-a242-25e3d2094ee8	7bd7b34c-778d-421d-b80e-17ecba029854	13	93929317	93929317	C	G	SNP	DCT	NM_001922	human	genbank	54_36p	-1	validated	missense	c.194	p.R65P	0.1	NULL	HMMPfam_Tyrosinase;superfamily_Di-copper centre-containing domain	-	no_errors
AHNAK2	113146	genome.wustl.edu	36	14	104483748	104483748	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0800-01A-01W-0372-09	TCGA-13-0800-10A-01W-0372-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	757862e3-0392-4e05-a242-25e3d2094ee8	7bd7b34c-778d-421d-b80e-17ecba029854	14	104483748	104483748	C	G	SNP	AHNAK2	NM_138420	human	genbank	54_36p	-1	validated	missense	c.9085	p.E3029Q	0	NULL	-	-	no_errors
HERC2	8924	genome.wustl.edu	36	15	26110869	26110869	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0800-01A-01W-0372-09	TCGA-13-0800-10A-01W-0372-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	757862e3-0392-4e05-a242-25e3d2094ee8	7bd7b34c-778d-421d-b80e-17ecba029854	15	26110869	26110869	G	C	SNP	HERC2	NM_004667	human	genbank	54_36p	-1	validated	missense	c.8284	p.R2762G	1	NULL	HMMPfam_RCC1;HMMPfam_ZZ;HMMPfam_HECT;superfamily_Spermadhesin CUB domain;HMMPfam_Cyt-b5;superfamily_Cytochrome b5-like heme/steroid binding domain;superfamily_Galactose-binding domain-like;superfamily_RCC1/BLIP-II;HMMPfam_MIB_HERC2;superfamily_Hect E3 ligase catalytic domain	-	no_errors
SLC28A2	9153	genome.wustl.edu	36	15	43342663	43342663	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0800-01A-01W-0372-09	TCGA-13-0800-10A-01W-0372-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	757862e3-0392-4e05-a242-25e3d2094ee8	7bd7b34c-778d-421d-b80e-17ecba029854	15	43342663	43342663	G	C	SNP	SLC28A2	NM_004212	human	genbank	54_36p	1	provisional	missense	c.375	p.K125N	0.01	NULL	-	-	no_errors
PRR15L	79170	genome.wustl.edu	36	17	43385312	43385312	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0800-01A-01W-0372-09	TCGA-13-0800-10A-01W-0372-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	757862e3-0392-4e05-a242-25e3d2094ee8	7bd7b34c-778d-421d-b80e-17ecba029854	17	43385312	43385312	G	C	SNP	ATAD4	NM_024320	human	genbank	54_36p	-1	provisional	missense	c.288	p.H96Q		NULL	-	-	no_errors
LLGL2	3993	genome.wustl.edu	36	17	71066945	71066945	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0800-01A-01W-0372-09	TCGA-13-0800-10A-01W-0372-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	757862e3-0392-4e05-a242-25e3d2094ee8	7bd7b34c-778d-421d-b80e-17ecba029854	17	71066945	71066945	C	G	SNP	LLGL2	NM_001031803	human	genbank	54_36p	1	reviewed	missense	c.389	p.T130R	1	NULL	HMMPfam_WD40;superfamily_WD40 repeat-like;HMMPfam_LLGL	-	no_errors
TP53	7157	genome.wustl.edu	36	17	7519260	7519260	+	Missense_Mutation	SNP	T	A	A	novel	Unknown	TCGA-13-0800-01A-01W-0372-09	TCGA-13-0800-10A-01W-0372-09	T	T	A	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	757862e3-0392-4e05-a242-25e3d2094ee8	7bd7b34c-778d-421d-b80e-17ecba029854	17	7519260	7519260	T	A	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	missense	c.395	p.K132M	1	HMMPfam_P53	superfamily_p53-like transcription factors;superfamily_p53 tetramerization domain;P53_tetramer;HMMPfam_P53_tetramer;P53;HMMPfam_P53;P53_TAD;HMMPfam_P53_TAD	-	no_errors
C19orf57	79173	genome.wustl.edu	36	19	13867340	13867340	+	Silent	SNP	T	T	G	novel	Unknown	TCGA-13-0800-01A-01W-0372-09	TCGA-13-0800-10A-01W-0372-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	757862e3-0392-4e05-a242-25e3d2094ee8	7bd7b34c-778d-421d-b80e-17ecba029854	19	13867340	13867340	T	G	SNP	C19orf57	NM_024323	human	genbank	54_36p	-1	predicted	silent	c.51	p.P17		NULL	-	-	no_errors
ZNF493	284443	genome.wustl.edu	36	19	21399223	21399223	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0800-01A-01W-0372-09	TCGA-13-0800-10A-01W-0372-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	757862e3-0392-4e05-a242-25e3d2094ee8	7bd7b34c-778d-421d-b80e-17ecba029854	19	21399223	21399223	C	A	SNP	ZNF493	NM_001076678	human	genbank	54_36p	1	validated	missense	c.1922	p.S641Y		NULL	-	-	no_errors
CCDC123	84902	genome.wustl.edu	36	19	38116210	38116210	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0800-01A-01W-0372-09	TCGA-13-0800-10A-01W-0372-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	757862e3-0392-4e05-a242-25e3d2094ee8	7bd7b34c-778d-421d-b80e-17ecba029854	19	38116210	38116210	C	T	SNP	CCDC123	NM_032816	human	genbank	54_36p	-1	validated	silent	c.873	p.A291		NULL	-	-	no_errors
ZNF285B	147711	genome.wustl.edu	36	19	49669048	49669048	+	RNA	SNP	T	T	C	novel	Unknown	TCGA-13-0800-01A-01W-0372-09	TCGA-13-0800-10A-01W-0372-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	757862e3-0392-4e05-a242-25e3d2094ee8	7bd7b34c-778d-421d-b80e-17ecba029854	19	49669048	49669048	T	C	SNP	ZNF285B	XR_016906	human	genbank	54_36p	1	model	rna	NULL	NULL		-	-	-	pseudogene
CEACAM16	388551	genome.wustl.edu	36	19	49894554	49894554	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0800-01A-01W-0372-09	TCGA-13-0800-10A-01W-0372-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	757862e3-0392-4e05-a242-25e3d2094ee8	7bd7b34c-778d-421d-b80e-17ecba029854	19	49894554	49894554	G	C	SNP	CEACAM16	NM_001039213	human	genbank	54_36p	1	provisional	missense	c.165	p.L55F	1	NULL	-	-	no_errors
MYBPC2	4606	genome.wustl.edu	36	19	55631732	55631732	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0800-01A-01W-0372-09	TCGA-13-0800-10A-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	757862e3-0392-4e05-a242-25e3d2094ee8	7bd7b34c-778d-421d-b80e-17ecba029854	19	55631732	55631732	G	A	SNP	MYBPC2	NM_004533	human	genbank	54_36p	1	validated	missense	c.392	p.R131H	0.85	NULL	HMMPfam_fn3;superfamily_Fibronectin type III;HMMPfam_I-set;superfamily_Immunoglobulin	-	no_errors
ZNF614	80110	genome.wustl.edu	36	19	57212247	57212247	+	Nonsense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0800-01A-01W-0372-09	TCGA-13-0800-10A-01W-0372-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	757862e3-0392-4e05-a242-25e3d2094ee8	7bd7b34c-778d-421d-b80e-17ecba029854	19	57212247	57212247	G	C	SNP	ZNF614	NM_025040	human	genbank	54_36p	-1	validated	nonsense	c.416	p.S139*	0.07	NULL	HMMPfam_KRAB;HMMPfam_zf-C2H2;superfamily_KRAB domain (Kruppel-associated box Pfam 01352);superfamily_C2H2 and C2HC zinc fingers	-	no_errors
EMR1	2015	genome.wustl.edu	36	19	6877553	6877553	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0800-01A-01W-0372-09	TCGA-13-0800-10A-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	757862e3-0392-4e05-a242-25e3d2094ee8	7bd7b34c-778d-421d-b80e-17ecba029854	19	6877553	6877553	G	A	SNP	EMR1	NM_001974	human	genbank	54_36p	1	reviewed	silent	c.2163	p.P721	0.97	HMMPfam_7tm_2	HMMPfam_GPS;HMMPfam_7tm_2;HMMPfam_EGF_CA;superfamily_EGF/Laminin;superfamily_Family A G protein-coupled receptor-like	-	no_errors
PNPLA6	10908	genome.wustl.edu	36	19	7520842	7520842	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0800-01A-01W-0372-09	TCGA-13-0800-10A-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	757862e3-0392-4e05-a242-25e3d2094ee8	7bd7b34c-778d-421d-b80e-17ecba029854	19	7520842	7520842	G	A	SNP	PNPLA6	NM_006702	human	genbank	54_36p	1	validated	missense	c.1541	p.R514H	1	HMMPfam_cNMP_binding	HMMPfam_cNMP_binding;superfamily_cAMP-binding domain-like;HMMPfam_Patatin;superfamily_FabD/lysophospholipase-like	-	no_errors
NBAS	51594	genome.wustl.edu	36	2	15481953	15481953	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-13-0800-01A-01W-0372-09	TCGA-13-0800-10A-01W-0372-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	757862e3-0392-4e05-a242-25e3d2094ee8	7bd7b34c-778d-421d-b80e-17ecba029854	2	15481953	15481953	C	G	SNP	NBAS	NM_015909	human	genbank	54_36p	-1	validated	silent	c.2514	p.T838	0.05	NULL	-	-	no_errors
SERPINE2	5270	genome.wustl.edu	36	2	224571223	224571223	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0800-01A-01W-0372-09	TCGA-13-0800-10A-01W-0372-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	757862e3-0392-4e05-a242-25e3d2094ee8	7bd7b34c-778d-421d-b80e-17ecba029854	2	224571223	224571223	C	T	SNP	SERPINE2	NM_006216	human	genbank	54_36p	-1	validated	missense	c.340	p.V114M	0.87	NULL	-	-	no_errors
RPN2	6185	genome.wustl.edu	36	20	35295886	35295886	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0800-01A-01W-0372-09	TCGA-13-0800-10A-01W-0372-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	757862e3-0392-4e05-a242-25e3d2094ee8	7bd7b34c-778d-421d-b80e-17ecba029854	20	35295886	35295886	C	T	SNP	RPN2	NM_002951	human	genbank	54_36p	1	reviewed	missense	c.1727	p.T576M	1	HMMPfam_Ribophorin_II	HMMPfam_Ribophorin_II	-	no_errors
TGM2	7052	genome.wustl.edu	36	20	36212776	36212776	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0800-01A-01W-0372-09	TCGA-13-0800-10A-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	757862e3-0392-4e05-a242-25e3d2094ee8	7bd7b34c-778d-421d-b80e-17ecba029854	20	36212776	36212776	G	A	SNP	TGM2	NM_004613	human	genbank	54_36p	-1	reviewed	silent	c.531	p.N177		NULL	HMMPfam_Transglut_N;HMMPfam_Transglut_core;HMMPfam_Transglut_C;superfamily_Transglutaminase two C-terminal domains;superfamily_E set domains;superfamily_Cysteine proteinases	-	no_errors
PTPRT	11122	genome.wustl.edu	36	20	40739976	40739976	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0800-01A-01W-0372-09	TCGA-13-0800-10A-01W-0372-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	757862e3-0392-4e05-a242-25e3d2094ee8	7bd7b34c-778d-421d-b80e-17ecba029854	20	40739976	40739976	C	A	SNP	PTPRT	NM_133170	human	genbank	54_36p	-1	reviewed	missense	c.1097	p.G366V	1	NULL	-	-	no_errors
TOX2	84969	genome.wustl.edu	36	20	42126903	42126903	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0800-01A-01W-0372-09	TCGA-13-0800-10A-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	757862e3-0392-4e05-a242-25e3d2094ee8	7bd7b34c-778d-421d-b80e-17ecba029854	20	42126903	42126903	G	A	SNP	TOX2	NM_001098797	human	genbank	54_36p	1	validated	missense	c.952	p.V318I	1	NULL	-	-	no_errors
ATR	545	genome.wustl.edu	36	3	143663531	143663531	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-0800-01A-01W-0372-09	TCGA-13-0800-10A-01W-0372-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	757862e3-0392-4e05-a242-25e3d2094ee8	7bd7b34c-778d-421d-b80e-17ecba029854	3	143663531	143663531	T	A	SNP	ATR	NM_001184	human	genbank	54_36p	-1	reviewed	missense	c.7133	p.E2378V	1	HMMPfam_PI3_PI4_kinase	HMMPfam_HEAT;HMMPfam_PI3_PI4_kinase;HMMPfam_FAT;HMMPfam_FATC;superfamily_Protein kinase-like (PK-like);HMMPfam_UME;superfamily_ARM repeat;superfamily_TPR-like	-	no_errors
PIK3CA	5290	genome.wustl.edu	36	3	180418785	180418785	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0800-01A-01W-0372-09	TCGA-13-0800-10A-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	757862e3-0392-4e05-a242-25e3d2094ee8	7bd7b34c-778d-421d-b80e-17ecba029854	3	180418785	180418785	G	A	SNP	PIK3CA	NM_006218	human	genbank	54_36p	1	reviewed	missense	c.1633	p.E545K	1	HMMPfam_PI3Ka	PI3K_rbd;HMMPfam_PI3K_rbd;PI3_PI4_kinase;HMMPfam_PI3_PI4_kinase;PI3Ka;HMMPfam_PI3Ka;PI3K_C2;HMMPfam_PI3K_C2;PI3K_p85B;HMMPfam_PI3K_p85B	-	no_errors
HTR1F	3355	genome.wustl.edu	36	3	88122898	88122898	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0800-01A-01W-0372-09	TCGA-13-0800-10A-01W-0372-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	757862e3-0392-4e05-a242-25e3d2094ee8	7bd7b34c-778d-421d-b80e-17ecba029854	3	88122898	88122898	C	A	SNP	HTR1F	NM_000866	human	genbank	54_36p	1	validated	missense	c.309	p.D103E	1	NULL	-	-	no_errors
CYP2A7P1	1550	genome.wustl.edu	36	19	46224937	46224937	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0800-01A-01W-0372-09	TCGA-13-0800-10A-01W-0372-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	757862e3-0392-4e05-a242-25e3d2094ee8	7bd7b34c-778d-421d-b80e-17ecba029854	19	46224937	46224937	C	T	SNP	CYP2A7P1	ENST00000301171	human	ensembl	54_36p	-1	known	missense	c.253	p.D85N	0.79	NULL	-	-	no_stop_codon
CYP2A7P1	1550	genome.wustl.edu	36	19	46225384	46225384	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0800-01A-01W-0372-09	TCGA-13-0800-10A-01W-0372-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	757862e3-0392-4e05-a242-25e3d2094ee8	7bd7b34c-778d-421d-b80e-17ecba029854	19	46225384	46225384	C	T	SNP	CYP2A7P1	ENST00000301171	human	ensembl	54_36p	-1	known	silent	c.84	p.K28	0.01	NULL	-	-	no_stop_codon
SLC25A2	83884	genome.wustl.edu	36	5	140663501	140663501	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0800-01A-01W-0372-09	TCGA-13-0800-10A-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	757862e3-0392-4e05-a242-25e3d2094ee8	7bd7b34c-778d-421d-b80e-17ecba029854	5	140663501	140663501	G	A	SNP	SLC25A2	NM_031947	human	genbank	54_36p	-1	reviewed	missense	c.116	p.T39M	1	NULL	-	-	no_errors
FRK	2444	genome.wustl.edu	36	6	116370338	116370338	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0800-01A-01W-0372-09	TCGA-13-0800-10A-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	757862e3-0392-4e05-a242-25e3d2094ee8	7bd7b34c-778d-421d-b80e-17ecba029854	6	116370338	116370338	G	A	SNP	FRK	NM_002031	human	genbank	54_36p	-1	reviewed	missense	c.1450	p.R484C	1	HMMPfam_Pkinase_Tyr	SH2;HMMPfam_SH2;Pkinase_Tyr;HMMPfam_Pkinase_Tyr;SH3_1;HMMPfam_SH3_1	-	no_errors
DNAH8	1769	genome.wustl.edu	36	6	38985289	38985289	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-13-0800-01A-01W-0372-09	TCGA-13-0800-10A-01W-0372-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	757862e3-0392-4e05-a242-25e3d2094ee8	7bd7b34c-778d-421d-b80e-17ecba029854	6	38985289	38985289	T	C	SNP	DNAH8	NM_001371	human	genbank	54_36p	1	validated	silent	c.8880	p.R2960	0.5	NULL	HMMPfam_AAA_5;HMMPfam_DHC_N1;HMMPfam_DHC_N2;superfamily_Spectrin repeat;superfamily_P-loop containing nucleoside triphosphate hydrolases;HMMPfam_Dynein_heavy	-	no_errors
MUC17	140453	genome.wustl.edu	36	7	100463481	100463481	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-13-0800-01A-01W-0372-09	TCGA-13-0800-10A-01W-0372-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	757862e3-0392-4e05-a242-25e3d2094ee8	7bd7b34c-778d-421d-b80e-17ecba029854	7	100463481	100463481	T	C	SNP	MUC17	NM_001040105	human	genbank	54_36p	1	provisional	silent	c.2064	p.T688	0.01	NULL	HMMPfam_SEA;superfamily_EGF/Laminin;superfamily_SEA domain	-	no_errors
CFTR	1080	genome.wustl.edu	36	7	116958238	116958238	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0800-01A-01W-0372-09	TCGA-13-0800-10A-01W-0372-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	757862e3-0392-4e05-a242-25e3d2094ee8	7bd7b34c-778d-421d-b80e-17ecba029854	7	116958238	116958238	C	A	SNP	CFTR	NM_000492	human	genbank	54_36p	1	reviewed	missense	c.323	p.S108Y	1	HMMPfam_ABC_membrane	HMMPfam_ABC_membrane;HMMPfam_ABC_tran;superfamily_P-loop containing nucleoside triphosphate hydrolases;superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain	-	no_errors
HECW1	23072	genome.wustl.edu	36	7	43558412	43558412	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0800-01A-01W-0372-09	TCGA-13-0800-10A-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	757862e3-0392-4e05-a242-25e3d2094ee8	7bd7b34c-778d-421d-b80e-17ecba029854	7	43558412	43558412	G	A	SNP	HECW1	NM_015052	human	genbank	54_36p	1	validated	missense	c.4462	p.A1488T	0.92	HMMPfam_HECT	HMMPfam_C2;HMMPfam_HECT;HMMPfam_WW;superfamily_WW domain;superfamily_C2 domain (Calcium/lipid-binding domain CaLB);superfamily_Hect E3 ligase catalytic domain	-	no_errors
GTF2IRD2P1	401375	genome.wustl.edu	36	7	72296263	72296263	+	RNA	SNP	G	G	A	novel	Unknown	TCGA-13-0800-01A-01W-0372-09	TCGA-13-0800-10A-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	757862e3-0392-4e05-a242-25e3d2094ee8	7bd7b34c-778d-421d-b80e-17ecba029854	7	72296263	72296263	G	A	SNP	GTF2IRD2P	NR_002164	human	genbank	54_36p	-1	provisional	rna	NULL	NULL	0.93	-	-	-	pseudogene
CALCR	799	genome.wustl.edu	36	7	92893814	92893814	+	Missense_Mutation	SNP	T	T	A		Unknown	TCGA-13-0800-01A-01W-0372-09	TCGA-13-0800-10A-01W-0372-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	757862e3-0392-4e05-a242-25e3d2094ee8	7bd7b34c-778d-421d-b80e-17ecba029854	7	92893814	92893814	T	A	SNP	CALCR	NM_001742	human	genbank	54_36p	-1	validated	missense	c.1215	p.Q405H	0.948	NULL	HMMPfam_7tm_2,HMMPfam_HRM,superfamily_Hormone receptor domain (HRM Pfam 02793),superfamily_Family A G protein-coupled receptor-like	-	no_errors
COL22A1	169044	genome.wustl.edu	36	8	139728095	139728095	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0800-01A-01W-0372-09	TCGA-13-0800-10A-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	757862e3-0392-4e05-a242-25e3d2094ee8	7bd7b34c-778d-421d-b80e-17ecba029854	8	139728095	139728095	G	A	SNP	COL22A1	NM_152888	human	genbank	54_36p	-1	validated	missense	c.3460	p.P1154S		NULL	HMMPfam_VWA;HMMPfam_Collagen;superfamily_Concanavalin A-like lectins/glucanases;superfamily_vWA-like	-	no_errors
FKTN	2218	genome.wustl.edu	36	9	107417453	107417453	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0800-01A-01W-0372-09	TCGA-13-0800-10A-01W-0372-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	757862e3-0392-4e05-a242-25e3d2094ee8	7bd7b34c-778d-421d-b80e-17ecba029854	9	107417453	107417453	C	T	SNP	FKTN	NM_001079802	human	genbank	54_36p	1	reviewed	missense	c.854	p.A285V	0.96	NULL	-	-	no_errors
LOC653155	653155	genome.wustl.edu	36	X	115766826	115766826	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0800-01A-01W-0372-09	TCGA-13-0800-10A-01W-0372-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	757862e3-0392-4e05-a242-25e3d2094ee8	7bd7b34c-778d-421d-b80e-17ecba029854	X	115766826	115766826	C	G	SNP	LOC653155	XM_926254	human	genbank	54_36p	-1	model	missense	c.36	p.M12I	1	NULL	-	-	no_errors
AIFM1	9131	genome.wustl.edu	36	X	129098804	129098804	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-13-0800-01A-01W-0372-09	TCGA-13-0800-10A-01W-0372-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	757862e3-0392-4e05-a242-25e3d2094ee8	7bd7b34c-778d-421d-b80e-17ecba029854	X	129098804	129098804	G	C	SNP	AIFM1	NM_004208	human	genbank	54_36p	-1	reviewed	silent	c.1005	p.P335	0.91	HMMPfam_Pyr_redox:HMMPfam_Pyr_redox_2	Pyr_redox;HMMPfam_Pyr_redox;Pyr_redox_2;HMMPfam_Pyr_redox_2;FAD/NAD(P)-binding domain;superfamily_FAD/NAD(P)-binding domain;FAD/NAD-linked reductases dimerisation (C-terminal) domain;superfamily_FAD/NAD-linked reductases dimerisation (C-terminal) domain	-	no_errors
RBMX	27316	genome.wustl.edu	36	X	135785393	135785393	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-0800-01A-01W-0372-09	TCGA-13-0800-10A-01W-0372-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	757862e3-0392-4e05-a242-25e3d2094ee8	7bd7b34c-778d-421d-b80e-17ecba029854	X	135785393	135785393	T	C	SNP	RBMX	NM_002139	human	genbank	54_36p	-1	reviewed	missense	c.559	p.R187G	1	HMMPfam_RBM1CTR	HMMPfam_RRM_1;HMMPfam_RBM1CTR;superfamily_RNA-binding domain RBD	-	no_errors
DMD	1756	genome.wustl.edu	36	X	32573127	32573127	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0800-01A-01W-0372-09	TCGA-13-0800-10A-01W-0372-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	757862e3-0392-4e05-a242-25e3d2094ee8	7bd7b34c-778d-421d-b80e-17ecba029854	X	32573127	32573127	C	T	SNP	DMD	NM_004006	human	genbank	54_36p	-1	reviewed	missense	c.1024	p.D342N	1	HMMPfam_Spectrin	HMMPfam_ZZ;HMMPfam_WW;superfamily_WW domain;HMMPfam_CH;HMMPfam_Spectrin;superfamily_Prefoldin;superfamily_t-snare proteins;HMMPfam_efhand_1;HMMPfam_efhand_2;superfamily_Spectrin repeat;superfamily_EF-hand;superfamily_Calponin-homology domain CH-domain	-	no_errors
ZNF674	641339	genome.wustl.edu	36	X	46245242	46245242	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0800-01A-01W-0372-09	TCGA-13-0800-10A-01W-0372-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	757862e3-0392-4e05-a242-25e3d2094ee8	7bd7b34c-778d-421d-b80e-17ecba029854	X	46245242	46245242	A	T	SNP	ZNF674	NM_001039891	human	genbank	54_36p	-1	provisional	missense	c.726	p.H242Q	0.68	NULL	-	-	no_errors
RAB41	347517	genome.wustl.edu	36	X	69418889	69418889	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-0800-01A-01W-0372-09	TCGA-13-0800-10A-01W-0372-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	757862e3-0392-4e05-a242-25e3d2094ee8	7bd7b34c-778d-421d-b80e-17ecba029854	X	69418889	69418889	A	G	SNP	RAB41	NM_001032726	human	genbank	54_36p	1	provisional	missense	c.97	p.K33E	0.31	HMMPfam_Ras	HMMPfam_Ras;P-loop containing nucleoside triphosphate hydrolases;superfamily_P-loop containing nucleoside triphosphate hydrolases;Ras	-	no_errors