Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ATRX 546 hgsc.bcm.edu 36 X 76664503 76664503 + Missense_Mutation SNP T T C novel TCGA-13-0889-01A-01W-0419-10 TCGA-13-0889-10A-01W-0419-10 T T . . . . Unknown Untested Somatic Phase_IV WXS none SOLID b5ccbd8d-caeb-4eaa-bcd1-5a394253f23f 56ca8dfa-39ca-4f14-adf7-eaf9b04a8745 C14orf159 80017 hgsc.bcm.edu 36 14 90709423 90709423 + Missense_Mutation SNP G G T novel TCGA-13-0889-01A-01W-0419-10 TCGA-13-0889-10A-01W-0419-10 G G . . . . Unknown Untested Somatic Phase_IV WXS none SOLID b5ccbd8d-caeb-4eaa-bcd1-5a394253f23f 56ca8dfa-39ca-4f14-adf7-eaf9b04a8745 CCNA1 8900 hgsc.bcm.edu 36 13 35913329 35913329 + Silent SNP T T A novel TCGA-13-0889-01A-01W-0419-10 TCGA-13-0889-10A-01W-0419-10 T T . . . . Unknown Untested Somatic Phase_IV WXS none SOLID b5ccbd8d-caeb-4eaa-bcd1-5a394253f23f 56ca8dfa-39ca-4f14-adf7-eaf9b04a8745 FAM123B 139285 hgsc.bcm.edu 36 X 63329263 63329263 + Missense_Mutation SNP G G A novel TCGA-13-0889-01A-01W-0419-10 TCGA-13-0889-10A-01W-0419-10 G G . . . . Unknown Untested Somatic Phase_IV WXS none SOLID b5ccbd8d-caeb-4eaa-bcd1-5a394253f23f 56ca8dfa-39ca-4f14-adf7-eaf9b04a8745 HRNR 388697 hgsc.bcm.edu 36 1 150462353 150462353 + Frame_Shift_Del DEL T T - novel TCGA-13-0889-01A-01W-0419-10 TCGA-13-0889-10A-01W-0419-10 T T . . . . Unknown Untested Somatic Phase_IV WXS none SOLID b5ccbd8d-caeb-4eaa-bcd1-5a394253f23f 56ca8dfa-39ca-4f14-adf7-eaf9b04a8745 PDCD6IP 10015 hgsc.bcm.edu 36 3 33852627 33852627 + Missense_Mutation SNP C C G novel TCGA-13-0889-01A-01W-0419-10 TCGA-13-0889-10A-01W-0419-10 C C . . . . Unknown Untested Somatic Phase_IV WXS none SOLID b5ccbd8d-caeb-4eaa-bcd1-5a394253f23f 56ca8dfa-39ca-4f14-adf7-eaf9b04a8745 SPINK5 11005 hgsc.bcm.edu 36 5 147480068 147480068 + Frame_Shift_Del DEL A A - novel TCGA-13-0889-01A-01W-0419-10 TCGA-13-0889-10A-01W-0419-10 A A . . . . Unknown Untested Somatic Phase_IV WXS none SOLID b5ccbd8d-caeb-4eaa-bcd1-5a394253f23f 56ca8dfa-39ca-4f14-adf7-eaf9b04a8745 ZNF681 148213 hgsc.bcm.edu 36 19 23719582 23719583 + Frame_Shift_Del DEL CA CA - novel TCGA-13-0889-01A-01W-0419-10 TCGA-13-0889-10A-01W-0419-10 CA CA . . . . Unknown Untested Somatic Phase_IV WXS none SOLID b5ccbd8d-caeb-4eaa-bcd1-5a394253f23f 56ca8dfa-39ca-4f14-adf7-eaf9b04a8745 FAM160A1 729830 hgsc.bcm.edu 36 4 152779297 152779297 + Missense_Mutation SNP G G A novel TCGA-13-0889-01A-01W-0419-10 TCGA-13-0889-10A-01W-0419-10 G G G A G G Unknown Valid Somatic Phase_IV WXS 454_PCR_WGA SOLID b5ccbd8d-caeb-4eaa-bcd1-5a394253f23f 56ca8dfa-39ca-4f14-adf7-eaf9b04a8745 HMCN1 83872 hgsc.bcm.edu 36 1 184380031 184380031 + Silent SNP G G A novel TCGA-13-0889-01A-01W-0419-10 TCGA-13-0889-10A-01W-0419-10 G G G A G G Unknown Valid Somatic Phase_IV WXS 454_PCR_WGA SOLID b5ccbd8d-caeb-4eaa-bcd1-5a394253f23f 56ca8dfa-39ca-4f14-adf7-eaf9b04a8745 IFT140 9742 hgsc.bcm.edu 36 16 1515306 1515306 + Missense_Mutation SNP G G A novel TCGA-13-0889-01A-01W-0419-10 TCGA-13-0889-10A-01W-0419-10 G G G A G G Unknown Valid Somatic Phase_IV WXS 454_PCR_WGA SOLID b5ccbd8d-caeb-4eaa-bcd1-5a394253f23f 56ca8dfa-39ca-4f14-adf7-eaf9b04a8745 MIB1 57534 hgsc.bcm.edu 36 18 17632062 17632062 + Missense_Mutation SNP G G A novel TCGA-13-0889-01A-01W-0419-10 TCGA-13-0889-10A-01W-0419-10 G G G A G G Unknown Valid Somatic Phase_IV WXS 454_PCR_WGA SOLID b5ccbd8d-caeb-4eaa-bcd1-5a394253f23f 56ca8dfa-39ca-4f14-adf7-eaf9b04a8745 PDE4DIP 9659 hgsc.bcm.edu 36 1 143623633 143623633 + Missense_Mutation SNP C C G novel TCGA-13-0889-01A-01W-0419-10 TCGA-13-0889-10A-01W-0419-10 C C C G C C Unknown Valid Somatic Phase_IV WXS 454_PCR_WGA SOLID b5ccbd8d-caeb-4eaa-bcd1-5a394253f23f 56ca8dfa-39ca-4f14-adf7-eaf9b04a8745 SELP 6403 hgsc.bcm.edu 36 1 167848917 167848917 + Missense_Mutation SNP G G T novel TCGA-13-0889-01A-01W-0419-10 TCGA-13-0889-10A-01W-0419-10 G G G T G G Unknown Valid Somatic Phase_IV WXS 454_PCR_WGA SOLID b5ccbd8d-caeb-4eaa-bcd1-5a394253f23f 56ca8dfa-39ca-4f14-adf7-eaf9b04a8745 TXNDC6 347736 hgsc.bcm.edu 36 3 139505158 139505158 + Missense_Mutation SNP C C T novel TCGA-13-0889-01A-01W-0419-10 TCGA-13-0889-10A-01W-0419-10 C C C T C C Unknown Valid Somatic Phase_IV WXS 454_PCR_WGA SOLID b5ccbd8d-caeb-4eaa-bcd1-5a394253f23f 56ca8dfa-39ca-4f14-adf7-eaf9b04a8745 ZNF407 55628 hgsc.bcm.edu 36 18 70472001 70472001 + Missense_Mutation SNP A A G novel TCGA-13-0889-01A-01W-0419-10 TCGA-13-0889-10A-01W-0419-10 A A A G A A Unknown Valid Somatic Phase_IV WXS 454_PCR_WGA SOLID b5ccbd8d-caeb-4eaa-bcd1-5a394253f23f 56ca8dfa-39ca-4f14-adf7-eaf9b04a8745 DBH 1621 hgsc.bcm.edu 36 9 135497212 135497212 + Missense_Mutation SNP C C G novel TCGA-13-0889-01A-01W-0419-10 TCGA-13-0889-10A-01W-0419-10 C C C G C C Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID b5ccbd8d-caeb-4eaa-bcd1-5a394253f23f 56ca8dfa-39ca-4f14-adf7-eaf9b04a8745 LRPPRC 10128 hgsc.bcm.edu 36 2 44026844 44026844 + Missense_Mutation SNP C C T novel TCGA-13-0889-01A-01W-0419-10 TCGA-13-0889-10A-01W-0419-10 C C C T C C Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID b5ccbd8d-caeb-4eaa-bcd1-5a394253f23f 56ca8dfa-39ca-4f14-adf7-eaf9b04a8745 ERBB2 2064 hgsc.bcm.edu 36 17 35121734 35121734 + Missense_Mutation SNP C C T novel TCGA-13-0889-01A-01W-0419-10 TCGA-13-0889-10A-01W-0419-10 C C C T C C Unknown Valid Somatic Phase_IV WXS Sanger_PCR_WGA SOLID b5ccbd8d-caeb-4eaa-bcd1-5a394253f23f 56ca8dfa-39ca-4f14-adf7-eaf9b04a8745 KDM2A 22992 hgsc.bcm.edu 36 11 66739976 66739976 + Missense_Mutation SNP C C T novel TCGA-13-0889-01A-01W-0419-10 TCGA-13-0889-10A-01W-0419-10 C C C T C C Unknown Valid Somatic Phase_IV WXS Sanger_PCR_WGA SOLID b5ccbd8d-caeb-4eaa-bcd1-5a394253f23f 56ca8dfa-39ca-4f14-adf7-eaf9b04a8745 KIAA1409 57578 hgsc.bcm.edu 36 14 93190053 93190053 + Missense_Mutation SNP C C T novel TCGA-13-0889-01A-01W-0419-10 TCGA-13-0889-10A-01W-0419-10 C C C T C C Unknown Valid Somatic Phase_IV WXS Sanger_PCR_WGA SOLID b5ccbd8d-caeb-4eaa-bcd1-5a394253f23f 56ca8dfa-39ca-4f14-adf7-eaf9b04a8745 LRP1 4035 hgsc.bcm.edu 36 12 55857204 55857204 + Missense_Mutation SNP G G A novel TCGA-13-0889-01A-01W-0419-10 TCGA-13-0889-10A-01W-0419-10 G G G A G G Unknown Valid Somatic Phase_IV WXS Sanger_PCR_WGA SOLID b5ccbd8d-caeb-4eaa-bcd1-5a394253f23f 56ca8dfa-39ca-4f14-adf7-eaf9b04a8745 MAP7D2 256714 hgsc.bcm.edu 36 X 19953033 19953033 + Missense_Mutation SNP C C T novel TCGA-13-0889-01A-01W-0419-10 TCGA-13-0889-10A-01W-0419-10 C C C T C C Unknown Valid Somatic Phase_IV WXS Sanger_PCR_WGA SOLID b5ccbd8d-caeb-4eaa-bcd1-5a394253f23f 56ca8dfa-39ca-4f14-adf7-eaf9b04a8745 MAPK14 1432 hgsc.bcm.edu 36 6 36178396 36178396 + Missense_Mutation SNP A A T novel TCGA-13-0889-01A-01W-0419-10 TCGA-13-0889-10A-01W-0419-10 A A A T A A Unknown Valid Somatic Phase_IV WXS Sanger_PCR_WGA SOLID b5ccbd8d-caeb-4eaa-bcd1-5a394253f23f 56ca8dfa-39ca-4f14-adf7-eaf9b04a8745 MYCBP2 23077 hgsc.bcm.edu 36 13 76593607 76593607 + Missense_Mutation SNP G G A novel TCGA-13-0889-01A-01W-0419-10 TCGA-13-0889-10A-01W-0419-10 G G G A G G Unknown Valid Somatic Phase_IV WXS Sanger_PCR_WGA SOLID b5ccbd8d-caeb-4eaa-bcd1-5a394253f23f 56ca8dfa-39ca-4f14-adf7-eaf9b04a8745 PPP2R5B 5526 hgsc.bcm.edu 36 11 64455917 64455917 + Splice_Site SNP G G T novel TCGA-13-0889-01A-01W-0419-10 TCGA-13-0889-10A-01W-0419-10 G G G T G G Unknown Valid Somatic Phase_IV WXS Sanger_PCR_WGA SOLID b5ccbd8d-caeb-4eaa-bcd1-5a394253f23f 56ca8dfa-39ca-4f14-adf7-eaf9b04a8745 SLC2A1 6513 hgsc.bcm.edu 36 1 43165445 43165445 + Missense_Mutation SNP A A G novel TCGA-13-0889-01A-01W-0419-10 TCGA-13-0889-10A-01W-0419-10 A A A G A A Unknown Valid Somatic Phase_IV WXS Sanger_PCR_WGA SOLID b5ccbd8d-caeb-4eaa-bcd1-5a394253f23f 56ca8dfa-39ca-4f14-adf7-eaf9b04a8745 TP53 7157 hgsc.bcm.edu 36 17 7517846 7517846 + Missense_Mutation SNP G G A novel TCGA-13-0889-01A-01W-0419-10 TCGA-13-0889-10A-01W-0419-10 G G G A G G Unknown Valid Somatic Phase_IV WXS Sanger_PCR_WGA SOLID b5ccbd8d-caeb-4eaa-bcd1-5a394253f23f 56ca8dfa-39ca-4f14-adf7-eaf9b04a8745 USP4 7375 hgsc.bcm.edu 36 3 49312914 49312914 + Missense_Mutation SNP C C G novel TCGA-13-0889-01A-01W-0419-10 TCGA-13-0889-10A-01W-0419-10 C C C G C C Unknown Valid Somatic Phase_IV WXS Sanger_PCR_WGA SOLID b5ccbd8d-caeb-4eaa-bcd1-5a394253f23f 56ca8dfa-39ca-4f14-adf7-eaf9b04a8745 XIRP2 129446 hgsc.bcm.edu 36 2 167815906 167815906 + Missense_Mutation SNP G G A novel TCGA-13-0889-01A-01W-0419-10 TCGA-13-0889-10A-01W-0419-10 G G G A G G Unknown Valid Somatic Phase_IV WXS Sanger_PCR_WGA SOLID b5ccbd8d-caeb-4eaa-bcd1-5a394253f23f 56ca8dfa-39ca-4f14-adf7-eaf9b04a8745