Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID chromosome_name start stop reference variant type gene_name transcript_name transcript_species transcript_source transcript_version strand transcript_status trv_type c_position amino_acid_change ucsc_cons domain all_domains deletion_substructures transcript_error COL11A1 1301 genome.wustl.edu 36 1 103264008 103264008 + Missense_Mutation SNP T T A novel Unknown TCGA-13-0893-01B-01W-0494-09 TCGA-13-0893-10A-01W-0494-09 T T T A T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx a335ab49-84b7-4d3b-a03d-9c3931904ca5 23f57381-b679-41b8-8197-aed711f71db4 1 103264008 103264008 T A SNP COL11A1 NM_080629 human genbank 54_36p -1 reviewed missense c.869 p.E290V 1 NULL HMMPfam_COLFI;HMMPfam_Collagen;superfamily_Concanavalin A-like lectins/glucanases;HMMPfam_Laminin_G_2;superfamily_Fibrinogen C-terminal domain-like - no_errors SLC16A4 9122 genome.wustl.edu 36 1 110725868 110725868 + Missense_Mutation SNP G G A novel Unknown TCGA-13-0893-01B-01W-0494-09 TCGA-13-0893-10A-01W-0494-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx a335ab49-84b7-4d3b-a03d-9c3931904ca5 23f57381-b679-41b8-8197-aed711f71db4 1 110725868 110725868 G A SNP SLC16A4 NM_004696 human genbank 54_36p -1 provisional missense c.293 p.T98I 0.98 NULL - - no_errors C1orf162 128346 genome.wustl.edu 36 1 111822162 111822162 + Missense_Mutation SNP C C T novel Unknown TCGA-13-0893-01B-01W-0494-09 TCGA-13-0893-10A-01W-0494-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx a335ab49-84b7-4d3b-a03d-9c3931904ca5 23f57381-b679-41b8-8197-aed711f71db4 1 111822162 111822162 C T SNP C1orf162 NM_174896 human genbank 54_36p 1 predicted missense c.362 p.A121V 0.01 NULL - - no_errors SMG5 23381 genome.wustl.edu 36 1 154499939 154499939 + Silent SNP G G A novel Unknown TCGA-13-0893-01B-01W-0494-09 TCGA-13-0893-10A-01W-0494-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx a335ab49-84b7-4d3b-a03d-9c3931904ca5 23f57381-b679-41b8-8197-aed711f71db4 1 154499939 154499939 G A SNP SMG5 NM_015327 human genbank 54_36p -1 validated silent c.1902 p.R634 0.46 NULL - - no_errors RGS4 5999 genome.wustl.edu 36 1 161309978 161309978 + Missense_Mutation SNP T T A novel Unknown TCGA-13-0893-01B-01W-0494-09 TCGA-13-0893-10A-01W-0494-09 T T T A T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx a335ab49-84b7-4d3b-a03d-9c3931904ca5 23f57381-b679-41b8-8197-aed711f71db4 1 161309978 161309978 T A SNP RGS4 NM_001102445 human genbank 54_36p 1 reviewed missense c.611 p.L204Q 0.97 NULL - - no_errors RCSD1 92241 genome.wustl.edu 36 1 165925967 165925967 + Missense_Mutation SNP A A T novel Unknown TCGA-13-0893-01B-01W-0494-09 TCGA-13-0893-10A-01W-0494-09 A A A T A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx a335ab49-84b7-4d3b-a03d-9c3931904ca5 23f57381-b679-41b8-8197-aed711f71db4 1 165925967 165925967 A T SNP RCSD1 NM_052862 human genbank 54_36p 1 validated missense c.256 p.I86F 1 NULL HMMPfam_RCSD - no_errors RC3H1 149041 genome.wustl.edu 36 1 172220294 172220294 + Silent SNP T T C novel Unknown TCGA-13-0893-01B-01W-0494-09 TCGA-13-0893-10A-01W-0494-09 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx a335ab49-84b7-4d3b-a03d-9c3931904ca5 23f57381-b679-41b8-8197-aed711f71db4 1 172220294 172220294 T C SNP RC3H1 NM_172071 human genbank 54_36p -1 validated silent c.318 p.L106 1 NULL - - no_errors RYR2 6262 genome.wustl.edu 36 1 235930267 235930267 + Missense_Mutation SNP C C A novel Unknown TCGA-13-0893-01B-01W-0494-09 TCGA-13-0893-10A-01W-0494-09 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx a335ab49-84b7-4d3b-a03d-9c3931904ca5 23f57381-b679-41b8-8197-aed711f71db4 1 235930267 235930267 C A SNP RYR2 NM_001035 human genbank 54_36p 1 reviewed missense c.9244 p.H3082N 1 NULL HMMPfam_RYDR_ITPR;HMMPfam_efhand;HMMPfam_RyR;HMMPfam_MIR;HMMPfam_SPRY;HMMPfam_Ion_trans;HMMPfam_RR_TM4-6;HMMPfam_RIH_assoc;HMMPfam_Ins145_P3_rec;superfamily_EF-hand;superfamily_MIR domain (Pfam 02815) - no_errors SLC5A9 200010 genome.wustl.edu 36 1 48470284 48470284 + Silent SNP C C A novel Unknown TCGA-13-0893-01B-01W-0494-09 TCGA-13-0893-10A-01W-0494-09 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx a335ab49-84b7-4d3b-a03d-9c3931904ca5 23f57381-b679-41b8-8197-aed711f71db4 1 48470284 48470284 C A SNP SLC5A9 NM_001011547 human genbank 54_36p 1 validated silent c.825 p.T275 1 NULL - - no_errors C10orf113 387638 genome.wustl.edu 36 10 21454980 21454980 + Missense_Mutation SNP T T A novel Unknown TCGA-13-0893-01B-01W-0494-09 TCGA-13-0893-10A-01W-0494-09 T T T A T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx a335ab49-84b7-4d3b-a03d-9c3931904ca5 23f57381-b679-41b8-8197-aed711f71db4 10 21454980 21454980 T A SNP C10orf113 NM_001010896 human genbank 54_36p -1 predicted missense c.216 p.Q72H 0.78 NULL - - no_errors CUL2 8453 genome.wustl.edu 36 10 35368017 35368017 + Splice_Site SNP C C T novel Unknown TCGA-13-0893-01B-01W-0494-09 TCGA-13-0893-10A-01W-0494-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx a335ab49-84b7-4d3b-a03d-9c3931904ca5 23f57381-b679-41b8-8197-aed711f71db4 10 35368017 35368017 C T SNP CUL2 NM_003591 human genbank 54_36p -1 provisional splice_site c.715-1 e8-1 1 - - - no_errors ANKRD30A 91074 genome.wustl.edu 36 10 37470809 37470809 + Missense_Mutation SNP T T G novel Unknown TCGA-13-0893-01B-01W-0494-09 TCGA-13-0893-10A-01W-0494-09 T T T G T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx a335ab49-84b7-4d3b-a03d-9c3931904ca5 23f57381-b679-41b8-8197-aed711f71db4 10 37470809 37470809 T G SNP ANKRD30A NM_052997 human genbank 54_36p 1 validated missense c.810 p.D270E 0.03 NULL HMMPfam_Ank;superfamily_Ankyrin repeat - no_errors LOC440063 440063 genome.wustl.edu 36 11 100042557 100042557 + RNA SNP C C T novel Unknown TCGA-13-0893-01B-01W-0494-09 TCGA-13-0893-10A-01W-0494-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx a335ab49-84b7-4d3b-a03d-9c3931904ca5 23f57381-b679-41b8-8197-aed711f71db4 11 100042557 100042557 C T SNP LOC440063 XR_016123 human genbank 54_36p 1 model rna NULL NULL 0.95 - - - pseudogene OR8B3 390271 genome.wustl.edu 36 11 123772093 123772093 + Missense_Mutation SNP C C T novel Unknown TCGA-13-0893-01B-01W-0494-09 TCGA-13-0893-10A-01W-0494-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx a335ab49-84b7-4d3b-a03d-9c3931904ca5 23f57381-b679-41b8-8197-aed711f71db4 11 123772093 123772093 C T SNP OR8B3 NM_001005467 human genbank 54_36p -1 provisional missense c.365 p.R122H 1 NULL - - no_errors NTM 50863 genome.wustl.edu 36 11 131689818 131689818 + Silent SNP G G T novel Unknown TCGA-13-0893-01B-01W-0494-09 TCGA-13-0893-10A-01W-0494-09 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx a335ab49-84b7-4d3b-a03d-9c3931904ca5 23f57381-b679-41b8-8197-aed711f71db4 11 131689818 131689818 G T SNP HNT ENST00000374784 human ensembl 54_36p 1 known silent c.945 p.V315 0.96 NULL - - no_errors TRIM21 6737 genome.wustl.edu 36 11 4366267 4366267 + Missense_Mutation SNP C C G novel Unknown TCGA-13-0893-01B-01W-0494-09 TCGA-13-0893-10A-01W-0494-09 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx a335ab49-84b7-4d3b-a03d-9c3931904ca5 23f57381-b679-41b8-8197-aed711f71db4 11 4366267 4366267 C G SNP TRIM21 NM_003141 human genbank 54_36p -1 reviewed missense c.574 p.E192Q 0.98 NULL - - no_errors UBQLN3 50613 genome.wustl.edu 36 11 5486713 5486713 + Missense_Mutation SNP G G A novel Unknown TCGA-13-0893-01B-01W-0494-09 TCGA-13-0893-10A-01W-0494-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx a335ab49-84b7-4d3b-a03d-9c3931904ca5 23f57381-b679-41b8-8197-aed711f71db4 11 5486713 5486713 G A SNP UBQLN3 NM_017481 human genbank 54_36p -1 reviewed missense c.652 p.R218W 1 NULL HMMPfam_UBA;HMMPfam_ubiquitin;superfamily_UBA-like;superfamily_ARM repeat;superfamily_Ubiquitin-like - no_errors NARS2 79731 genome.wustl.edu 36 11 77954928 77954928 + Missense_Mutation SNP C C G novel Unknown TCGA-13-0893-01B-01W-0494-09 TCGA-13-0893-10A-01W-0494-09 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx a335ab49-84b7-4d3b-a03d-9c3931904ca5 23f57381-b679-41b8-8197-aed711f71db4 11 77954928 77954928 C G SNP NARS2 NM_024678 human genbank 54_36p -1 provisional missense c.411 p.E137D 0.99 HMMPfam_tRNA-synt_2 HMMPfam_tRNA-synt_2;HMMPfam_tRNA_anti;superfamily_Nucleic acid-binding proteins;superfamily_Class II aaRS and biotin synthetases - no_errors ARPC3 10094 genome.wustl.edu 36 12 109362576 109362576 + Missense_Mutation SNP G G T novel Unknown TCGA-13-0893-01B-01W-0494-09 TCGA-13-0893-10A-01W-0494-09 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx a335ab49-84b7-4d3b-a03d-9c3931904ca5 23f57381-b679-41b8-8197-aed711f71db4 12 109362576 109362576 G T SNP ARPC3 NM_005719 human genbank 54_36p -1 reviewed missense c.107 p.T36K 1 NULL - - no_errors TIMELESS 8914 genome.wustl.edu 36 12 55113600 55113600 + Missense_Mutation SNP C C G novel Unknown TCGA-13-0893-01B-01W-0494-09 TCGA-13-0893-10A-01W-0494-09 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx a335ab49-84b7-4d3b-a03d-9c3931904ca5 23f57381-b679-41b8-8197-aed711f71db4 12 55113600 55113600 C G SNP TIMELESS NM_003920 human genbank 54_36p -1 validated missense c.355 p.A119P 1 HMMPfam_TIMELESS HMMPfam_TIMELESS;HMMPfam_TIMELESS_C - no_errors FREM2 341640 genome.wustl.edu 36 13 38162383 38162383 + Missense_Mutation SNP G G A novel Unknown TCGA-13-0893-01B-01W-0494-09 TCGA-13-0893-10A-01W-0494-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx a335ab49-84b7-4d3b-a03d-9c3931904ca5 23f57381-b679-41b8-8197-aed711f71db4 13 38162383 38162383 G A SNP FREM2 NM_207361 human genbank 54_36p 1 reviewed missense c.2902 p.V968I 0.92 NULL HMMPfam_Calx-beta;superfamily_Cadherin-like - no_errors IGHG2 3501 genome.wustl.edu 36 14 105180768 105180768 + Nonsense_Mutation SNP C C A novel Unknown TCGA-13-0893-01B-01W-0494-09 TCGA-13-0893-10A-01W-0494-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx a335ab49-84b7-4d3b-a03d-9c3931904ca5 23f57381-b679-41b8-8197-aed711f71db4 14 105180768 105180768 C A SNP IGHG2 ENST00000390544 human ensembl 54_36p -1 known nonsense c.793 p.G265* 0.01 NULL - - no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region ENSG00000211962 0 genome.wustl.edu 36 14 106038188 106038188 + Missense_Mutation SNP C C T novel Unknown TCGA-13-0893-01B-01W-0494-09 TCGA-13-0893-10A-01W-0494-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx a335ab49-84b7-4d3b-a03d-9c3931904ca5 23f57381-b679-41b8-8197-aed711f71db4 14 106038188 106038188 C T SNP ENSG00000211962 ENST00000390622 human ensembl 54_36p -1 known missense c.257 p.R86K NULL - - no_stop_codon:bad_bp_length_for_coding_region PARP2 10038 genome.wustl.edu 36 14 19890252 19890252 + Missense_Mutation SNP A A C novel Unknown TCGA-13-0893-01B-01W-0494-09 TCGA-13-0893-10A-01W-0494-09 A A A C A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx a335ab49-84b7-4d3b-a03d-9c3931904ca5 23f57381-b679-41b8-8197-aed711f71db4 14 19890252 19890252 A C SNP PARP2 NM_005484 human genbank 54_36p 1 reviewed missense c.545 p.D182A 1 NULL - - no_errors ZNF280D 54816 genome.wustl.edu 36 15 54758184 54758184 + Missense_Mutation SNP C C T novel Unknown TCGA-13-0893-01B-01W-0494-09 TCGA-13-0893-10A-01W-0494-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx a335ab49-84b7-4d3b-a03d-9c3931904ca5 23f57381-b679-41b8-8197-aed711f71db4 15 54758184 54758184 C T SNP ZNF280D NM_017661 human genbank 54_36p -1 validated missense c.1132 p.E378K 1 NULL HMMPfam_zf-C2H2;superfamily_C2H2 and C2HC zinc fingers;superfamily_RING/U-box - no_errors VPS13C 54832 genome.wustl.edu 36 15 60048898 60048898 + Missense_Mutation SNP G G C novel Unknown TCGA-13-0893-01B-01W-0494-09 TCGA-13-0893-10A-01W-0494-09 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx a335ab49-84b7-4d3b-a03d-9c3931904ca5 23f57381-b679-41b8-8197-aed711f71db4 15 60048898 60048898 G C SNP VPS13C NM_020821 human genbank 54_36p -1 validated missense c.2803 p.L935V 1 NULL HMMPfam_DUF1162 - no_errors ADAMTSL3 57188 genome.wustl.edu 36 15 82279788 82279788 + Missense_Mutation SNP C C G novel Unknown TCGA-13-0893-01B-01W-0494-09 TCGA-13-0893-10A-01W-0494-09 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx a335ab49-84b7-4d3b-a03d-9c3931904ca5 23f57381-b679-41b8-8197-aed711f71db4 15 82279788 82279788 C G SNP ADAMTSL3 NM_207517 human genbank 54_36p 1 validated missense c.585 p.I195M 1 NULL TSP_1;HMMPfam_TSP_1;PLAC;HMMPfam_PLAC;I-set;HMMPfam_I-set;ig;HMMPfam_ig;Immunoglobulin;superfamily_Immunoglobulin;TSP-1 type 1 repeat;superfamily_TSP-1 type 1 repeat - no_errors C16orf45 89927 genome.wustl.edu 36 16 15516746 15516756 + Frame_Shift_Del DEL CGGGAAGTCTT CGGGAAGTCTT - novel Unknown TCGA-13-0893-01B-01W-0494-09 TCGA-13-0893-10A-01W-0494-09 CGGGAAGTCTT CGGGAAGTCTT CGGGAAGTCTT - CGGGAAGTCTT CGGGAAGTCTT Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx a335ab49-84b7-4d3b-a03d-9c3931904ca5 23f57381-b679-41b8-8197-aed711f71db4 16 15516746 15516756 CGGGAAGTCTT - DEL C16orf45 NM_033201 human genbank 54_36p 1 validated frame_shift_del c.190_200 p.R64fs 1.000:1.000:0.993:1.000:1.000:1.000:1.000:1.000:0.998:0.999:1.000 NULL - (deletion:cds_exon[15516663;15516786]) no_errors ABCC6P1 653190 genome.wustl.edu 36 16 18493854 18493854 + RNA SNP C C G novel Unknown TCGA-13-0893-01B-01W-0494-09 TCGA-13-0893-10A-01W-0494-09 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx a335ab49-84b7-4d3b-a03d-9c3931904ca5 23f57381-b679-41b8-8197-aed711f71db4 16 18493854 18493854 C G SNP ABCC6P1 NR_003569 human genbank 54_36p 1 provisional rna NULL NULL 0.026 - - - pseudogene ATXN2L 11273 genome.wustl.edu 36 16 28753429 28753429 + Missense_Mutation SNP C C G novel Unknown TCGA-13-0893-01B-01W-0494-09 TCGA-13-0893-10A-01W-0494-09 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx a335ab49-84b7-4d3b-a03d-9c3931904ca5 23f57381-b679-41b8-8197-aed711f71db4 16 28753429 28753429 C G SNP ATXN2L NM_148414 human genbank 54_36p 1 reviewed missense c.2347 p.P783A 0.03 NULL superfamily_Sm-like ribonucleoproteins;HMMPfam_Ataxin-2_N;HMMPfam_PAM2 - no_errors MYH13 8735 genome.wustl.edu 36 17 10208484 10208484 + Missense_Mutation SNP C C G novel Unknown TCGA-13-0893-01B-01W-0494-09 TCGA-13-0893-10A-01W-0494-09 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx a335ab49-84b7-4d3b-a03d-9c3931904ca5 23f57381-b679-41b8-8197-aed711f71db4 17 10208484 10208484 C G SNP MYH13 NM_003802 human genbank 54_36p -1 validated missense c.89 p.R30P 0.13 NULL HMMPfam_IQ;HMMPfam_Myosin_head;HMMPfam_Myosin_tail_1;HMMPfam_Myosin_N;superfamily_Prefoldin;superfamily_Spectrin repeat;superfamily_P-loop containing nucleoside triphosphate hydrolases - no_errors PRKCA 5578 genome.wustl.edu 36 17 62072044 62072044 + Missense_Mutation SNP G A A novel Unknown TCGA-13-0893-01B-01W-0494-09 TCGA-13-0893-10A-01W-0494-09 G G A A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx a335ab49-84b7-4d3b-a03d-9c3931904ca5 23f57381-b679-41b8-8197-aed711f71db4 17 62072044 62072044 G A SNP PRKCA NM_002737 human genbank 54_36p 1 reviewed missense c.482 p.R161Q 0.99 NULL HMMPfam_Pkinase;C2;HMMPfam_C2;Pkinase;Pkinase_C;HMMPfam_Pkinase_C;C1_1;HMMPfam_C1_1;C2 domain (Calcium/lipid-binding domain CaLB);superfamily_C2 domain (Calcium/lipid-binding domain CaLB);Protein kinase-like (PK-like);superfamily_Protein kinase-like (PK-like);Cysteine-rich domain;superfamily_Cysteine-rich domain - no_errors KIAA0195 9772 genome.wustl.edu 36 17 70998423 70998423 + Missense_Mutation SNP G G A novel Unknown TCGA-13-0893-01B-01W-0494-09 TCGA-13-0893-10A-01W-0494-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx a335ab49-84b7-4d3b-a03d-9c3931904ca5 23f57381-b679-41b8-8197-aed711f71db4 17 70998423 70998423 G A SNP KIAA0195 NM_014738 human genbank 54_36p 1 validated missense c.1117 p.V373I 1 NULL HMMPfam_E1-E2_ATPase,superfamily_Calcium ATPase transmembrane domain M - no_errors TP53 7157 genome.wustl.edu 36 17 7518272 7518272 + Missense_Mutation SNP C C T novel Unknown TCGA-13-0893-01B-01W-0494-09 TCGA-13-0893-10A-01W-0494-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx a335ab49-84b7-4d3b-a03d-9c3931904ca5 23f57381-b679-41b8-8197-aed711f71db4 17 7518272 7518272 C T SNP TP53 NM_000546 human genbank 54_36p -1 reviewed missense c.734 p.G245D 1 HMMPfam_P53 superfamily_p53-like transcription factors;superfamily_p53 tetramerization domain;P53_tetramer;HMMPfam_P53_tetramer;P53;HMMPfam_P53;P53_TAD;HMMPfam_P53_TAD - no_errors CCDC102B 79839 genome.wustl.edu 36 18 64829163 64829163 + Missense_Mutation SNP C C T novel Unknown TCGA-13-0893-01B-01W-0494-09 TCGA-13-0893-10A-01W-0494-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx a335ab49-84b7-4d3b-a03d-9c3931904ca5 23f57381-b679-41b8-8197-aed711f71db4 18 64829163 64829163 C T SNP CCDC102B NM_001093729 human genbank 54_36p 1 validated missense c.1276 p.L426F 0.62 NULL - - no_errors MED26 9441 genome.wustl.edu 36 19 16548873 16548873 + Silent SNP C C A novel Unknown TCGA-13-0893-01B-01W-0494-09 TCGA-13-0893-10A-01W-0494-09 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx a335ab49-84b7-4d3b-a03d-9c3931904ca5 23f57381-b679-41b8-8197-aed711f71db4 19 16548873 16548873 C A SNP MED26 NM_004831 human genbank 54_36p -1 validated silent c.768 p.V256 0.02 NULL - - no_errors TSHZ3 57616 genome.wustl.edu 36 19 36459884 36459884 + Silent SNP C C T novel Unknown TCGA-13-0893-01B-01W-0494-09 TCGA-13-0893-10A-01W-0494-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx a335ab49-84b7-4d3b-a03d-9c3931904ca5 23f57381-b679-41b8-8197-aed711f71db4 19 36459884 36459884 C T SNP TSHZ3 NM_020856 human genbank 54_36p -1 validated silent c.2655 p.S885 0.96 NULL - - no_errors NLRP12 91662 genome.wustl.edu 36 19 59005210 59005210 + Silent SNP G G A novel Unknown TCGA-13-0893-01B-01W-0494-09 TCGA-13-0893-10A-01W-0494-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx a335ab49-84b7-4d3b-a03d-9c3931904ca5 23f57381-b679-41b8-8197-aed711f71db4 19 59005210 59005210 G A SNP NLRP12 NM_144687 human genbank 54_36p -1 reviewed silent c.1515 p.N505 0.18 NULL - - no_errors ZNF549 256051 genome.wustl.edu 36 19 62741182 62741182 + Missense_Mutation SNP T T A novel Unknown TCGA-13-0893-01B-01W-0494-09 TCGA-13-0893-10A-01W-0494-09 T T T A T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx a335ab49-84b7-4d3b-a03d-9c3931904ca5 23f57381-b679-41b8-8197-aed711f71db4 19 62741182 62741182 T A SNP ZNF549 NM_153263 human genbank 54_36p 1 provisional missense c.959 p.V320E HMMPfam_zf-C2H2 HMMPfam_KRAB;HMMPfam_zf-C2H2;superfamily_KRAB domain (Kruppel-associated box Pfam 01352);superfamily_C2H2 and C2HC zinc fingers - no_errors ST6GAL2 84620 genome.wustl.edu 36 2 106826674 106826674 + Silent SNP G G A novel Unknown TCGA-13-0893-01B-01W-0494-09 TCGA-13-0893-10A-01W-0494-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx a335ab49-84b7-4d3b-a03d-9c3931904ca5 23f57381-b679-41b8-8197-aed711f71db4 2 106826674 106826674 G A SNP ST6GAL2 NM_032528 human genbank 54_36p -1 validated silent c.192 p.A64 0.04 NULL HMMPfam_Glyco_transf_29;superfamily_Glycoside hydrolase/deacetylase - no_errors XIRP2 129446 genome.wustl.edu 36 2 167815927 167815927 + Missense_Mutation SNP A A G novel Unknown TCGA-13-0893-01B-01W-0494-09 TCGA-13-0893-10A-01W-0494-09 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx a335ab49-84b7-4d3b-a03d-9c3931904ca5 23f57381-b679-41b8-8197-aed711f71db4 2 167815927 167815927 A G SNP XIRP2 NM_152381 human genbank 54_36p 1 validated missense c.9779 p.E3260G 1 NULL - - no_errors CHN1 1123 genome.wustl.edu 36 2 175488084 175488084 + Missense_Mutation SNP A A T novel Unknown TCGA-13-0893-01B-01W-0494-09 TCGA-13-0893-10A-01W-0494-09 A A A T A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx a335ab49-84b7-4d3b-a03d-9c3931904ca5 23f57381-b679-41b8-8197-aed711f71db4 2 175488084 175488084 A T SNP CHN1 NM_001025201 human genbank 54_36p -1 reviewed missense c.208 p.Y70N 1 HMMPfam_SH2 HMMPfam_RhoGAP;HMMPfam_SH2;HMMPfam_C1_1;superfamily_GTPase activation domain GAP;superfamily_SH2 domain;superfamily_Cysteine-rich domain - no_errors TTN 7273 genome.wustl.edu 36 2 179148835 179148835 + Silent SNP T T C novel Unknown TCGA-13-0893-01B-01W-0494-09 TCGA-13-0893-10A-01W-0494-09 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx a335ab49-84b7-4d3b-a03d-9c3931904ca5 23f57381-b679-41b8-8197-aed711f71db4 2 179148835 179148835 T C SNP TTN NM_133378 human genbank 54_36p -1 reviewed silent c.62565 p.R20855 1 NULL - - pseudogene:no_stop_codon:bad_bp_length_for_coding_region NEUROD1 4760 genome.wustl.edu 36 2 182251718 182251718 + Nonsense_Mutation SNP T T A novel Unknown TCGA-13-0893-01B-01W-0494-09 TCGA-13-0893-10A-01W-0494-09 T T T A T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx a335ab49-84b7-4d3b-a03d-9c3931904ca5 23f57381-b679-41b8-8197-aed711f71db4 2 182251718 182251718 T A SNP NEUROD1 NM_002500 human genbank 54_36p -1 reviewed nonsense c.115 p.K39* 1 NULL HMMPfam_HLH;superfamily_HLH helix-loop-helix DNA-binding domain - no_errors DUSP19 142679 genome.wustl.edu 36 2 183656523 183656523 + Missense_Mutation SNP A A G novel Unknown TCGA-13-0893-01B-01W-0494-09 TCGA-13-0893-10A-01W-0494-09 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx a335ab49-84b7-4d3b-a03d-9c3931904ca5 23f57381-b679-41b8-8197-aed711f71db4 2 183656523 183656523 A G SNP DUSP19 NM_080876 human genbank 54_36p 1 validated missense c.269 p.N90S 1 HMMPfam_DSPc HMMPfam_DSPc;superfamily_(Phosphotyrosine protein) phosphatases II - no_errors FAM126B 285172 genome.wustl.edu 36 2 201554792 201554792 + Missense_Mutation SNP C C A novel Unknown TCGA-13-0893-01B-01W-0494-09 TCGA-13-0893-10A-01W-0494-09 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx a335ab49-84b7-4d3b-a03d-9c3931904ca5 23f57381-b679-41b8-8197-aed711f71db4 2 201554792 201554792 C A SNP FAM126B NM_173822 human genbank 54_36p -1 validated missense c.1039 p.A347S 1 NULL - - no_errors APOB 338 genome.wustl.edu 36 2 21113540 21113540 + Silent SNP C C G novel Unknown TCGA-13-0893-01B-01W-0494-09 TCGA-13-0893-10A-01W-0494-09 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx a335ab49-84b7-4d3b-a03d-9c3931904ca5 23f57381-b679-41b8-8197-aed711f71db4 2 21113540 21113540 C G SNP APOB NM_000384 human genbank 54_36p -1 reviewed silent c.630 p.G210 0.7 HMMPfam_Vitellogenin_N HMMPfam_Vitellogenin_N;HMMPfam_DUF1081;HMMPfam_DUF1943 - no_errors SOS1 6654 genome.wustl.edu 36 2 39066920 39066920 + Missense_Mutation SNP G G T novel Unknown TCGA-13-0893-01B-01W-0494-09 TCGA-13-0893-10A-01W-0494-09 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx a335ab49-84b7-4d3b-a03d-9c3931904ca5 23f57381-b679-41b8-8197-aed711f71db4 2 39066920 39066920 G T SNP SOS1 NM_005633 human genbank 54_36p -1 reviewed missense c.3551 p.P1184H 1 NULL HMMPfam_RhoGEF;HMMPfam_RasGEF_N;HMMPfam_PH;HMMPfam_RasGEF;HMMPfam_Histone;superfamily_Ras GEF;superfamily_Histone-fold;superfamily_DBL homology domain (DH-domain);superfamily_PH domain-like - no_errors SPTBN1 6711 genome.wustl.edu 36 2 54711572 54711572 + Missense_Mutation SNP C C T novel Unknown TCGA-13-0893-01B-01W-0494-09 TCGA-13-0893-10A-01W-0494-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx a335ab49-84b7-4d3b-a03d-9c3931904ca5 23f57381-b679-41b8-8197-aed711f71db4 2 54711572 54711572 C T SNP SPTBN1 NM_003128 human genbank 54_36p 1 reviewed missense c.2884 p.L962F 1 NULL - - no_errors TGM6 343641 genome.wustl.edu 36 20 2345927 2345927 + Silent SNP C C T novel Unknown TCGA-13-0893-01B-01W-0494-09 TCGA-13-0893-10A-01W-0494-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx a335ab49-84b7-4d3b-a03d-9c3931904ca5 23f57381-b679-41b8-8197-aed711f71db4 20 2345927 2345927 C T SNP TGM6 NM_198994 human genbank 54_36p 1 validated silent c.1386 p.F462 0.055 NULL - - no_errors FOXS1 2307 genome.wustl.edu 36 20 29896449 29896449 + Silent SNP A A T novel Unknown TCGA-13-0893-01B-01W-0494-09 TCGA-13-0893-10A-01W-0494-09 A A A T A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx a335ab49-84b7-4d3b-a03d-9c3931904ca5 23f57381-b679-41b8-8197-aed711f71db4 20 29896449 29896449 A T SNP FOXS1 NM_004118 human genbank 54_36p -1 reviewed silent c.558 p.P186 0.984 NULL - - no_errors BCAS1 8537 genome.wustl.edu 36 20 52045883 52045883 + Silent SNP A A G novel Unknown TCGA-13-0893-01B-01W-0494-09 TCGA-13-0893-10A-01W-0494-09 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx a335ab49-84b7-4d3b-a03d-9c3931904ca5 23f57381-b679-41b8-8197-aed711f71db4 20 52045883 52045883 A G SNP BCAS1 NM_003657 human genbank 54_36p -1 reviewed silent c.837 p.A279 NULL - - no_errors KRTAP10-11 386678 genome.wustl.edu 36 21 44891299 44891299 + Missense_Mutation SNP T T C novel Unknown TCGA-13-0893-01B-01W-0494-09 TCGA-13-0893-10A-01W-0494-09 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx a335ab49-84b7-4d3b-a03d-9c3931904ca5 23f57381-b679-41b8-8197-aed711f71db4 21 44891299 44891299 T C SNP KRTAP10-11 NM_198692 human genbank 54_36p 1 validated missense c.496 p.S166P HMMPfam_Keratin_B2 HMMPfam_Keratin_B2 - no_errors P2RY13 53829 genome.wustl.edu 36 3 152528599 152528599 + Missense_Mutation SNP A A G novel Unknown TCGA-13-0893-01B-01W-0494-09 TCGA-13-0893-10A-01W-0494-09 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx a335ab49-84b7-4d3b-a03d-9c3931904ca5 23f57381-b679-41b8-8197-aed711f71db4 3 152528599 152528599 A G SNP P2RY13 NM_176894 human genbank 54_36p -1 reviewed missense c.872 p.M291T 1 NULL - - no_errors WDR48 57599 genome.wustl.edu 36 3 39068559 39068559 + Silent SNP G A A novel Unknown TCGA-13-0893-01B-01W-0494-09 TCGA-13-0893-10A-01W-0494-09 G G A A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx a335ab49-84b7-4d3b-a03d-9c3931904ca5 23f57381-b679-41b8-8197-aed711f71db4 3 39068559 39068559 G A SNP WDR48 NM_020839 human genbank 54_36p 1 provisional silent c.39 p.R13 1 NULL - - no_errors SETD2 29072 genome.wustl.edu 36 3 47117991 47117991 + Missense_Mutation SNP C C A novel Unknown TCGA-13-0893-01B-01W-0494-09 TCGA-13-0893-10A-01W-0494-09 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx a335ab49-84b7-4d3b-a03d-9c3931904ca5 23f57381-b679-41b8-8197-aed711f71db4 3 47117991 47117991 C A SNP SETD2 NM_014159 human genbank 54_36p -1 reviewed missense c.3467 p.G1156V 1 HMMPfam_SET HMMPfam_WW;superfamily_WW domain;HMMPfam_SET;superfamily_Ferritin-like;HMMPfam_SRI_2;superfamily_SET domain - no_errors ABCA11P 79963 genome.wustl.edu 36 4 409943 409943 + RNA SNP T T G novel Unknown TCGA-13-0893-01B-01W-0494-09 TCGA-13-0893-10A-01W-0494-09 T T T G T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx a335ab49-84b7-4d3b-a03d-9c3931904ca5 23f57381-b679-41b8-8197-aed711f71db4 4 409943 409943 T G SNP ABCA11P NR_002451 human genbank 54_36p -1 validated rna NULL NULL 1 - - - pseudogene MTHFD2L 441024 genome.wustl.edu 36 4 75259197 75259197 + Missense_Mutation SNP G G T novel Unknown TCGA-13-0893-01B-01W-0494-09 TCGA-13-0893-10A-01W-0494-09 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx a335ab49-84b7-4d3b-a03d-9c3931904ca5 23f57381-b679-41b8-8197-aed711f71db4 4 75259197 75259197 G T SNP MTHFD2L ENST00000325278 human ensembl 54_36p 1 known missense c.80 p.S27I 1 NULL - - no_errors FAM183A 440585 genome.wustl.edu 36 1 43391135 43391135 + Missense_Mutation SNP G G T novel Unknown TCGA-13-0893-01B-01W-0494-09 TCGA-13-0893-10A-01W-0494-09 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx a335ab49-84b7-4d3b-a03d-9c3931904ca5 23f57381-b679-41b8-8197-aed711f71db4 1 43391135 43391135 G T SNP FAM183A NM_001101376 human genbank 54_36p 1 validated missense c.243 p.K81N 1 NULL - - no_errors MIR7-3 407045 genome.wustl.edu 36 19 4721690 4721690 + RNA SNP G G C novel Unknown TCGA-13-0893-01B-01W-0494-09 TCGA-13-0893-10A-01W-0494-09 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx a335ab49-84b7-4d3b-a03d-9c3931904ca5 23f57381-b679-41b8-8197-aed711f71db4 19 4721690 4721690 G C SNP MIRN7-3 ENST00000384898 human ensembl 54_36p 1 known rna NULL NULL - - - no_errors ANKHD1-EIF4EBP3 404734 genome.wustl.edu 36 5 139897277 139897277 + Missense_Mutation SNP G G A novel Unknown TCGA-13-0893-01B-01W-0494-09 TCGA-13-0893-10A-01W-0494-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx a335ab49-84b7-4d3b-a03d-9c3931904ca5 23f57381-b679-41b8-8197-aed711f71db4 5 139897277 139897277 G A SNP ANKHD1-EIF4EBP3 NM_020690 human genbank 54_36p 1 reviewed missense c.7147 p.A2383T 1 NULL - - no_errors HRH2 3274 genome.wustl.edu 36 5 175043082 175043082 + Silent SNP G G C novel Unknown TCGA-13-0893-01B-01W-0494-09 TCGA-13-0893-10A-01W-0494-09 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx a335ab49-84b7-4d3b-a03d-9c3931904ca5 23f57381-b679-41b8-8197-aed711f71db4 5 175043082 175043082 G C SNP HRH2 NM_022304 human genbank 54_36p 1 reviewed silent c.240 p.L80 0.01 HMMPfam_7tm_1 HMMPfam_7tm_1;superfamily_Family A G protein-coupled receptor-like - no_errors UIMC1 51720 genome.wustl.edu 36 5 176342143 176342143 + Missense_Mutation SNP G G T novel Unknown TCGA-13-0893-01B-01W-0494-09 TCGA-13-0893-10A-01W-0494-09 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx a335ab49-84b7-4d3b-a03d-9c3931904ca5 23f57381-b679-41b8-8197-aed711f71db4 5 176342143 176342143 G T SNP UIMC1 NM_016290 human genbank 54_36p -1 provisional missense c.80 p.S27Y 0.01 NULL - - no_errors LOC285634 285634 genome.wustl.edu 36 5 39754878 39754878 + RNA SNP G G A novel Unknown TCGA-13-0893-01B-01W-0494-09 TCGA-13-0893-10A-01W-0494-09 G G G A G G Unknown Valid Somatic 4 Capture Sanger_PCR_WGA 1 dbGAP Illumina GAIIx a335ab49-84b7-4d3b-a03d-9c3931904ca5 23f57381-b679-41b8-8197-aed711f71db4 5 39754878 39754878 G A SNP LOC285634 XR_017261 human genbank 54_36p -1 model rna NULL NULL 0.83 - - - pseudogene C7 730 genome.wustl.edu 36 5 41012691 41012691 + Silent SNP C C T novel Unknown TCGA-13-0893-01B-01W-0494-09 TCGA-13-0893-10A-01W-0494-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx a335ab49-84b7-4d3b-a03d-9c3931904ca5 23f57381-b679-41b8-8197-aed711f71db4 5 41012691 41012691 C T SNP C7 NM_000587 human genbank 54_36p 1 reviewed silent c.2157 p.Y719 0.99 NULL - - no_errors CNKSR3 154043 genome.wustl.edu 36 6 154785390 154785390 + Missense_Mutation SNP G G T novel Unknown TCGA-13-0893-01B-01W-0494-09 TCGA-13-0893-10A-01W-0494-09 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx a335ab49-84b7-4d3b-a03d-9c3931904ca5 23f57381-b679-41b8-8197-aed711f71db4 6 154785390 154785390 G T SNP CNKSR3 NM_173515 human genbank 54_36p -1 validated missense c.887 p.S296Y 0.95 NULL HMMPfam_PDZ;superfamily_PDZ domain-like;HMMPfam_SAM_1;HMMPfam_DUF1170;superfamily_SAM/Pointed domain - no_errors SYNGAP1 8831 genome.wustl.edu 36 6 33519570 33519570 + Missense_Mutation SNP G G T novel Unknown TCGA-13-0893-01B-01W-0494-09 TCGA-13-0893-10A-01W-0494-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx a335ab49-84b7-4d3b-a03d-9c3931904ca5 23f57381-b679-41b8-8197-aed711f71db4 6 33519570 33519570 G T SNP SYNGAP1 NM_006772 human genbank 54_36p 1 validated missense c.3218 p.S1073I 1 NULL HMMPfam_C2;HMMPfam_PH;HMMPfam_RasGAP;superfamily_GTPase activation domain GAP;superfamily_C2 domain (Calcium/lipid-binding domain CaLB);superfamily_PH domain-like - no_errors DST 667 genome.wustl.edu 36 6 56607639 56607639 + Silent SNP A A T novel Unknown TCGA-13-0893-01B-01W-0494-09 TCGA-13-0893-10A-01W-0494-09 A A A T A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx a335ab49-84b7-4d3b-a03d-9c3931904ca5 23f57381-b679-41b8-8197-aed711f71db4 6 56607639 56607639 A T SNP DST NM_183380 human genbank 54_36p -1 reviewed silent c.2625 p.I875 1 NULL - - no_errors OR6V1 346517 genome.wustl.edu 36 7 142460290 142460290 + Missense_Mutation SNP C C A novel Unknown TCGA-13-0893-01B-01W-0494-09 TCGA-13-0893-10A-01W-0494-09 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx a335ab49-84b7-4d3b-a03d-9c3931904ca5 23f57381-b679-41b8-8197-aed711f71db4 7 142460290 142460290 C A SNP OR6V1 NM_001001667 human genbank 54_36p 1 provisional missense c.731 p.T244K 0.03 NULL - - no_errors GLI3 2737 genome.wustl.edu 36 7 41978556 41978556 + Missense_Mutation SNP G G C novel Unknown TCGA-13-0893-01B-01W-0494-09 TCGA-13-0893-10A-01W-0494-09 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx a335ab49-84b7-4d3b-a03d-9c3931904ca5 23f57381-b679-41b8-8197-aed711f71db4 7 41978556 41978556 G C SNP GLI3 NM_000168 human genbank 54_36p -1 reviewed missense c.2008 p.Q670E 1 NULL zf-C2H2;HMMPfam_zf-C2H2;C2H2 and C2HC zinc fingers;superfamily_C2H2 and C2HC zinc fingers - no_errors ZNF12 7559 genome.wustl.edu 36 7 6703494 6703494 + Splice_Site SNP C C A novel Unknown TCGA-13-0893-01B-01W-0494-09 TCGA-13-0893-10A-01W-0494-09 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx a335ab49-84b7-4d3b-a03d-9c3931904ca5 23f57381-b679-41b8-8197-aed711f71db4 7 6703494 6703494 C A SNP ZNF12 NM_016265 human genbank 54_36p -1 reviewed splice_site c.238+1 e3+1 0.99 - - - no_errors BAZ1B 9031 genome.wustl.edu 36 7 72515339 72515339 + Missense_Mutation SNP T T C novel Unknown TCGA-13-0893-01B-01W-0494-09 TCGA-13-0893-10A-01W-0494-09 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx a335ab49-84b7-4d3b-a03d-9c3931904ca5 23f57381-b679-41b8-8197-aed711f71db4 7 72515339 72515339 T C SNP BAZ1B NM_032408 human genbank 54_36p -1 reviewed missense c.3098 p.H1033R 1 NULL - - no_errors SEMA3D 223117 genome.wustl.edu 36 7 84489662 84489662 + Silent SNP A A G novel Unknown TCGA-13-0893-01B-01W-0494-09 TCGA-13-0893-10A-01W-0494-09 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx a335ab49-84b7-4d3b-a03d-9c3931904ca5 23f57381-b679-41b8-8197-aed711f71db4 7 84489662 84489662 A G SNP SEMA3D NM_152754 human genbank 54_36p -1 validated silent c.1395 p.D465 1 HMMPfam_Sema HMMPfam_Sema;superfamily_Sema domain;HMMPfam_PSI;HMMPfam_V-set;superfamily_Plexin repeat;superfamily_Immunoglobulin - no_errors TMEM74 157753 genome.wustl.edu 36 8 109865647 109865647 + Missense_Mutation SNP G G T novel Unknown TCGA-13-0893-01B-01W-0494-09 TCGA-13-0893-10A-01W-0494-09 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx a335ab49-84b7-4d3b-a03d-9c3931904ca5 23f57381-b679-41b8-8197-aed711f71db4 8 109865647 109865647 G T SNP TMEM74 NM_153015 human genbank 54_36p -1 provisional missense c.857 p.T286K 0.01 NULL - - no_errors COL14A1 7373 genome.wustl.edu 36 8 121306511 121306511 + Nonsense_Mutation SNP G G T novel Unknown TCGA-13-0893-01B-01W-0494-09 TCGA-13-0893-10A-01W-0494-09 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx a335ab49-84b7-4d3b-a03d-9c3931904ca5 23f57381-b679-41b8-8197-aed711f71db4 8 121306511 121306511 G T SNP COL14A1 NM_021110 human genbank 54_36p 1 validated nonsense c.1741 p.E581* 1 HMMPfam_fn3 HMMPfam_VWA;HMMPfam_fn3;HMMPfam_Collagen;superfamily_Fibronectin type III;superfamily_Concanavalin A-like lectins/glucanases;superfamily_vWA-like - no_errors FER1L6 654463 genome.wustl.edu 36 8 125058959 125058959 + Missense_Mutation SNP T T G novel Unknown TCGA-13-0893-01B-01W-0494-09 TCGA-13-0893-10A-01W-0494-09 T T T G T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx a335ab49-84b7-4d3b-a03d-9c3931904ca5 23f57381-b679-41b8-8197-aed711f71db4 8 125058959 125058959 T G SNP FER1L6 NM_001039112 human genbank 54_36p 1 validated missense c.992 p.M331R 1 HMMPfam_C2 superfamily_C2 domain (Calcium/lipid-binding domain CaLB);HMMPfam_FerB;HMMPfam_FerI;superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain;HMMPfam_C2 - no_errors CYP11B1 1584 genome.wustl.edu 36 8 143958074 143958074 + Missense_Mutation SNP A A T novel Unknown TCGA-13-0893-01B-01W-0494-09 TCGA-13-0893-10A-01W-0494-09 A A Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx a335ab49-84b7-4d3b-a03d-9c3931904ca5 23f57381-b679-41b8-8197-aed711f71db4 8 143958074 143958074 A T SNP CYP11B1 NM_000497 human genbank 54_36p -1 reviewed missense c.158 p.L53Q 1 HMMPfam_p450 HMMPfam_p450;superfamily_Cytochrome P450 - no_errors RNF20 56254 genome.wustl.edu 36 9 103353795 103353795 + Missense_Mutation SNP G G C novel Unknown TCGA-13-0893-01B-01W-0494-09 TCGA-13-0893-10A-01W-0494-09 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx a335ab49-84b7-4d3b-a03d-9c3931904ca5 23f57381-b679-41b8-8197-aed711f71db4 9 103353795 103353795 G C SNP RNF20 NM_019592 human genbank 54_36p 1 reviewed missense c.1281 p.E427D 0.99 NULL HMMPfam_zf-C3HC4;superfamily_Prefoldin;superfamily_STAT;superfamily_RING/U-box - no_errors OR1L6 392390 genome.wustl.edu 36 9 124552709 124552709 + Silent SNP G G A novel Unknown TCGA-13-0893-01B-01W-0494-09 TCGA-13-0893-10A-01W-0494-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx a335ab49-84b7-4d3b-a03d-9c3931904ca5 23f57381-b679-41b8-8197-aed711f71db4 9 124552709 124552709 G A SNP OR1L6 NM_001004453 human genbank 54_36p 1 provisional silent c.870 p.G290 0.82 NULL - - no_errors MPDZ 8777 genome.wustl.edu 36 9 13109558 13109558 + Missense_Mutation SNP C C G novel Unknown TCGA-13-0893-01B-01W-0494-09 TCGA-13-0893-10A-01W-0494-09 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx a335ab49-84b7-4d3b-a03d-9c3931904ca5 23f57381-b679-41b8-8197-aed711f71db4 9 13109558 13109558 C G SNP MPDZ NM_003829 human genbank 54_36p -1 validated missense c.5322 p.M1774I 1 NULL - - no_errors TESK1 7016 genome.wustl.edu 36 9 35596922 35596922 + Missense_Mutation SNP C C G novel Unknown TCGA-13-0893-01B-01W-0494-09 TCGA-13-0893-10A-01W-0494-09 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx a335ab49-84b7-4d3b-a03d-9c3931904ca5 23f57381-b679-41b8-8197-aed711f71db4 9 35596922 35596922 C G SNP TESK1 NM_006285 human genbank 54_36p 1 reviewed missense c.479 p.A160G 1 HMMPfam_Pkinase HMMPfam_Pkinase;superfamily_Protein kinase-like (PK-like) - no_errors C9orf46 55848 genome.wustl.edu 36 9 5351832 5351832 + Missense_Mutation SNP C C G novel Unknown TCGA-13-0893-01B-01W-0494-09 TCGA-13-0893-10A-01W-0494-09 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx a335ab49-84b7-4d3b-a03d-9c3931904ca5 23f57381-b679-41b8-8197-aed711f71db4 9 5351832 5351832 C G SNP C9orf46 NM_018465 human genbank 54_36p -1 predicted missense c.138 p.Q46H 1 NULL - - no_errors PCSK5 5125 genome.wustl.edu 36 9 77993897 77993897 + Missense_Mutation SNP G G T novel Unknown TCGA-13-0893-01B-01W-0494-09 TCGA-13-0893-10A-01W-0494-09 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx a335ab49-84b7-4d3b-a03d-9c3931904ca5 23f57381-b679-41b8-8197-aed711f71db4 9 77993897 77993897 G T SNP PCSK5 NM_006200 human genbank 54_36p 1 reviewed missense c.2448 p.Q816H 1 NULL HMMPfam_Peptidase_S8;superfamily_Subtilisin-like;HMMPfam_P_proprotein;superfamily_Galactose-binding domain-like;superfamily_Protease propeptides/inhibitors;superfamily_Growth factor receptor domain;HMMPfam_PLAC - no_errors ZCCHC16 340595 genome.wustl.edu 36 X 111585049 111585049 + Missense_Mutation SNP C C T novel Unknown TCGA-13-0893-01B-01W-0494-09 TCGA-13-0893-10A-01W-0494-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx a335ab49-84b7-4d3b-a03d-9c3931904ca5 23f57381-b679-41b8-8197-aed711f71db4 X 111585049 111585049 C T SNP ZCCHC16 NM_001004308 human genbank 54_36p 1 validated missense c.437 p.P146L NULL - - no_errors