Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID chromosome_name start stop reference variant type gene_name transcript_name transcript_species transcript_source transcript_version strand transcript_status trv_type c_position amino_acid_change ucsc_cons domain all_domains deletion_substructures transcript_error PYHIN1 149628 genome.wustl.edu 36 1 157181450 157181450 + Missense_Mutation SNP C C G novel Unknown TCGA-13-0910-01A-01W-0421-09 TCGA-13-0910-10A-01W-0421-09 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 26cebe0b-b7a7-431e-bc12-7fda22af72f3 bdd22b11-0fe4-4879-a234-46c4b5d88658 1 157181450 157181450 C G SNP PYHIN1 NM_152501 human genbank 54_36p 1 validated missense c.1353 p.F451L 0.01 NULL - - no_errors B4GALT2 8704 genome.wustl.edu 36 1 44223557 44223557 + Missense_Mutation SNP T T G novel Unknown TCGA-13-0910-01A-01W-0421-09 TCGA-13-0910-10A-01W-0421-09 T T T G T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 26cebe0b-b7a7-431e-bc12-7fda22af72f3 bdd22b11-0fe4-4879-a234-46c4b5d88658 1 44223557 44223557 T G SNP B4GALT2 NM_001005417 human genbank 54_36p 1 reviewed missense c.761 p.F254C 1 HMMPfam_Galactosyl_T_2 HMMPfam_Galactosyl_T_2;superfamily_Nucleotide-diphospho-sugar transferases - no_errors DMBT1 1755 genome.wustl.edu 36 10 124380761 124380761 + Missense_Mutation SNP G G A novel Unknown TCGA-13-0910-01A-01W-0421-09 TCGA-13-0910-10A-01W-0421-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 26cebe0b-b7a7-431e-bc12-7fda22af72f3 bdd22b11-0fe4-4879-a234-46c4b5d88658 10 124380761 124380761 G A SNP DMBT1 NM_007329 human genbank 54_36p 1 reviewed missense c.5933 p.R1978H HMMPfam_SRCR HMMPfam_CUB;superfamily_Spermadhesin CUB domain;HMMPfam_SRCR;superfamily_SRCR-like;HMMPfam_Zona_pellucida - no_errors SFMBT2 57713 genome.wustl.edu 36 10 7245767 7245767 + Missense_Mutation SNP C C A novel Unknown TCGA-13-0910-01A-01W-0421-09 TCGA-13-0910-10A-01W-0421-09 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 26cebe0b-b7a7-431e-bc12-7fda22af72f3 bdd22b11-0fe4-4879-a234-46c4b5d88658 10 7245767 7245767 C A SNP SFMBT2 NM_001029880 human genbank 54_36p -1 provisional missense c.2656 p.V886L 1 NULL - - no_errors PTPRO 5800 genome.wustl.edu 36 12 15545856 15545856 + Missense_Mutation SNP G G A novel Unknown TCGA-13-0910-01A-01W-0421-09 TCGA-13-0910-10A-01W-0421-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 26cebe0b-b7a7-431e-bc12-7fda22af72f3 bdd22b11-0fe4-4879-a234-46c4b5d88658 12 15545856 15545856 G A SNP PTPRO NM_030667 human genbank 54_36p 1 reviewed missense c.697 p.V233I 0.98 NULL HMMPfam_Y_phosphatase;HMMPfam_fn3;superfamily_Fibronectin type III;superfamily_(Phosphotyrosine protein) phosphatases II - no_errors ARNTL2 56938 genome.wustl.edu 36 12 27444781 27444781 + Missense_Mutation SNP T T C novel Unknown TCGA-13-0910-01A-01W-0421-09 TCGA-13-0910-10A-01W-0421-09 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 26cebe0b-b7a7-431e-bc12-7fda22af72f3 bdd22b11-0fe4-4879-a234-46c4b5d88658 12 27444781 27444781 T C SNP ARNTL2 NM_020183 human genbank 54_36p 1 provisional missense c.967 p.W323R 1 NULL - - no_errors ADAMTS20 80070 genome.wustl.edu 36 12 42107469 42107469 + Missense_Mutation SNP G G C novel Unknown TCGA-13-0910-01A-01W-0421-09 TCGA-13-0910-10A-01W-0421-09 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 26cebe0b-b7a7-431e-bc12-7fda22af72f3 bdd22b11-0fe4-4879-a234-46c4b5d88658 12 42107469 42107469 G C SNP ADAMTS20 NM_025003 human genbank 54_36p -1 validated missense c.4016 p.A1339G 1 HMMPfam_TSP_1 "superfamily_Metalloproteases (""zincins"") catalytic domain;superfamily_TSP-1 type 1 repeat;TSP_1;HMMPfam_TSP_1;Reprolysin;HMMPfam_Reprolysin;Pep_M12B_propep;HMMPfam_Pep_M12B_propep;ADAM_spacer1;HMMPfam_ADAM_spacer1;GON;HMMPfam_GON" - no_errors ATP2B1 490 genome.wustl.edu 36 12 88519315 88519315 + Silent SNP T T C novel Unknown TCGA-13-0910-01A-01W-0421-09 TCGA-13-0910-10A-01W-0421-09 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 26cebe0b-b7a7-431e-bc12-7fda22af72f3 bdd22b11-0fe4-4879-a234-46c4b5d88658 12 88519315 88519315 T C SNP ATP2B1 NM_001682 human genbank 54_36p -1 reviewed silent c.3087 p.K1029 1 HMMPfam_Cation_ATPase_C HMMPfam_Cation_ATPase_N;HMMPfam_Hydrolase;HMMPfam_Cation_ATPase_C;HMMPfam_E1-E2_ATPase;superfamily_HAD-like;superfamily_Calcium ATPase transduction domain A;superfamily_Metal cation-transporting ATPase ATP-binding domain N;superfamily_Calcium ATPase transmembrane domain M - no_errors LOC400578 400578 genome.wustl.edu 36 17 16676298 16676298 + RNA SNP T T A novel Unknown TCGA-13-0910-01A-01W-0421-09 TCGA-13-0910-10A-01W-0421-09 T T T A T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 26cebe0b-b7a7-431e-bc12-7fda22af72f3 bdd22b11-0fe4-4879-a234-46c4b5d88658 17 16676298 16676298 T A SNP LOC400578 XR_017543 human genbank 54_36p -1 model rna NULL NULL 0.07 - - - no_errors TOM1L1 10040 genome.wustl.edu 36 17 50348154 50348154 + Missense_Mutation SNP G G A novel Unknown TCGA-13-0910-01A-01W-0421-09 TCGA-13-0910-10A-01W-0421-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 26cebe0b-b7a7-431e-bc12-7fda22af72f3 bdd22b11-0fe4-4879-a234-46c4b5d88658 17 50348154 50348154 G A SNP TOM1L1 NM_005486 human genbank 54_36p 1 validated missense c.652 p.V218M 1 HMMPfam_GAT HMMPfam_VHS;HMMPfam_GAT;superfamily_ENTH/VHS domain;superfamily_GAT-like domain - no_errors TP53 7157 genome.wustl.edu 36 17 7517839 7517839 + Missense_Mutation SNP C C T novel Unknown TCGA-13-0910-01A-01W-0421-09 TCGA-13-0910-10A-01W-0421-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 26cebe0b-b7a7-431e-bc12-7fda22af72f3 bdd22b11-0fe4-4879-a234-46c4b5d88658 17 7517839 7517839 C T SNP TP53 NM_000546 human genbank 54_36p -1 reviewed missense c.824 p.C275Y 1 HMMPfam_P53 superfamily_p53-like transcription factors;superfamily_p53 tetramerization domain;P53_tetramer;HMMPfam_P53_tetramer;P53;HMMPfam_P53;P53_TAD;HMMPfam_P53_TAD - no_errors ANKRD29 147463 genome.wustl.edu 36 18 19468108 19468108 + Missense_Mutation SNP C C T novel Unknown TCGA-13-0910-01A-01W-0421-09 TCGA-13-0910-10A-01W-0421-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 26cebe0b-b7a7-431e-bc12-7fda22af72f3 bdd22b11-0fe4-4879-a234-46c4b5d88658 18 19468108 19468108 C T SNP ANKRD29 NM_173505 human genbank 54_36p -1 validated missense c.334 p.G112R 0.987 NULL - - no_errors LILRB4 11006 genome.wustl.edu 36 19 59871171 59871171 + Silent SNP C C T novel Unknown TCGA-13-0910-01A-01W-0421-09 TCGA-13-0910-10A-01W-0421-09 C C C T C C Unknown Valid Somatic 4 Capture Sanger_PCR_WGA 1 dbGAP Illumina GAIIx 26cebe0b-b7a7-431e-bc12-7fda22af72f3 bdd22b11-0fe4-4879-a234-46c4b5d88658 19 59871171 59871171 C T SNP LILRB4 NM_006847 human genbank 54_36p 1 reviewed silent c.1236 p.Y412 0.95 NULL HMMPfam_ig;superfamily_Immunoglobulin - no_errors LTBP1 4052 genome.wustl.edu 36 2 33331329 33331329 + Missense_Mutation SNP C C T novel Unknown TCGA-13-0910-01A-01W-0421-09 TCGA-13-0910-10A-01W-0421-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 26cebe0b-b7a7-431e-bc12-7fda22af72f3 bdd22b11-0fe4-4879-a234-46c4b5d88658 2 33331329 33331329 C T SNP LTBP1 NM_206943 human genbank 54_36p 1 reviewed missense c.2081 p.S694F 1 HMMPfam_TB HMMPfam_EGF_CA;superfamily_EGF/Laminin;superfamily_TB module/8-cys domain;HMMPfam_TB;HMMPfam_EGF - no_errors ADRA2B 151 genome.wustl.edu 36 2 96145015 96145015 + Missense_Mutation SNP G G A novel Unknown TCGA-13-0910-01A-01W-0421-09 TCGA-13-0910-10A-01W-0421-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 26cebe0b-b7a7-431e-bc12-7fda22af72f3 bdd22b11-0fe4-4879-a234-46c4b5d88658 2 96145015 96145015 G A SNP ADRA2B NM_000682 human genbank 54_36p -1 reviewed missense c.601 p.R201C 1 NULL - - no_errors ZNF295 49854 genome.wustl.edu 36 21 42284519 42284519 + Missense_Mutation SNP T T G novel Unknown TCGA-13-0910-01A-01W-0421-09 TCGA-13-0910-10A-01W-0421-09 T T T G T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 26cebe0b-b7a7-431e-bc12-7fda22af72f3 bdd22b11-0fe4-4879-a234-46c4b5d88658 21 42284519 42284519 T G SNP ZNF295 NM_001098402 human genbank 54_36p -1 validated missense c.2755 p.T919P 0.99 NULL - - no_errors LOC100131223 100131223 genome.wustl.edu 36 1 28320341 28320341 + RNA SNP C C A novel Unknown TCGA-13-0910-01A-01W-0421-09 TCGA-13-0910-10A-01W-0421-09 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 26cebe0b-b7a7-431e-bc12-7fda22af72f3 bdd22b11-0fe4-4879-a234-46c4b5d88658 1 28320341 28320341 C A SNP LOC100131223 XR_039190 human genbank 54_36p -1 model rna NULL NULL 1 - - - pseudogene MED12L 116931 genome.wustl.edu 36 3 152588413 152588413 + Silent SNP C C T novel Unknown TCGA-13-0910-01A-01W-0421-09 TCGA-13-0910-10A-01W-0421-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 26cebe0b-b7a7-431e-bc12-7fda22af72f3 bdd22b11-0fe4-4879-a234-46c4b5d88658 3 152588413 152588413 C T SNP MED12L NM_053002 human genbank 54_36p 1 validated silent c.5109 p.Y1703 0.97 NULL - - no_errors BCHE 590 genome.wustl.edu 36 3 167030121 167030121 + Missense_Mutation SNP C C A novel Unknown TCGA-13-0910-01A-01W-0421-09 TCGA-13-0910-10A-01W-0421-09 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 26cebe0b-b7a7-431e-bc12-7fda22af72f3 bdd22b11-0fe4-4879-a234-46c4b5d88658 3 167030121 167030121 C A SNP BCHE NM_000055 human genbank 54_36p -1 reviewed missense c.1395 p.M465I 1 HMMPfam_COesterase HMMPfam_COesterase;HMMPfam_AChE_tetra;superfamily_alpha/beta-Hydrolases - no_errors LRRC33 375387 genome.wustl.edu 36 3 197871893 197871893 + Missense_Mutation SNP G G A novel Unknown TCGA-13-0910-01A-01W-0421-09 TCGA-13-0910-10A-01W-0421-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 26cebe0b-b7a7-431e-bc12-7fda22af72f3 bdd22b11-0fe4-4879-a234-46c4b5d88658 3 197871893 197871893 G A SNP LRRC33 NM_198565 human genbank 54_36p 1 provisional missense c.982 p.A328T 0.99 NULL - - no_errors RARS 5917 genome.wustl.edu 36 5 167861653 167861653 + Missense_Mutation SNP G G C novel Unknown TCGA-13-0910-01A-01W-0421-09 TCGA-13-0910-10A-01W-0421-09 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 26cebe0b-b7a7-431e-bc12-7fda22af72f3 bdd22b11-0fe4-4879-a234-46c4b5d88658 5 167861653 167861653 G C SNP RARS NM_002887 human genbank 54_36p 1 reviewed missense c.1022 p.R341T 1 HMMPfam_tRNA-synt_1d HMMPfam_Arg_tRNA_synt_N;HMMPfam_DALR_1;superfamily_Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases;HMMPfam_tRNA-synt_1d;superfamily_Nucleotidylyl transferase;superfamily_Arginyl-tRNA synthetase (ArgRS) N-terminal 'additional' domain - no_errors PRDM9 56979 genome.wustl.edu 36 5 23562913 23562913 + Silent SNP T T C novel Unknown TCGA-13-0910-01A-01W-0421-09 TCGA-13-0910-10A-01W-0421-09 T T Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 26cebe0b-b7a7-431e-bc12-7fda22af72f3 bdd22b11-0fe4-4879-a234-46c4b5d88658 5 23562913 23562913 T C SNP PRDM9 NM_020227 human genbank 54_36p 1 provisional silent c.1959 p.T653 0.01 NULL - - no_errors GPR98 84059 genome.wustl.edu 36 5 89961060 89961060 + Nonsense_Mutation SNP T T A novel Unknown TCGA-13-0910-01A-01W-0421-09 TCGA-13-0910-10A-01W-0421-09 T T T A T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 26cebe0b-b7a7-431e-bc12-7fda22af72f3 bdd22b11-0fe4-4879-a234-46c4b5d88658 5 89961060 89961060 T A SNP GPR98 NM_032119 human genbank 54_36p 1 reviewed nonsense c.1787 p.L596* 1 NULL HMMPfam_GPS;HMMPfam_Calx-beta;HMMPfam_EPTP;superfamily_Concanavalin A-like lectins/glucanases;superfamily_Phosphoglucomutase first 3 domains - no_errors LOC100131971 100131971 genome.wustl.edu 36 18 55579947 55579947 + Missense_Mutation SNP G G A novel Unknown TCGA-13-0910-01A-01W-0421-09 TCGA-13-0910-10A-01W-0421-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 26cebe0b-b7a7-431e-bc12-7fda22af72f3 bdd22b11-0fe4-4879-a234-46c4b5d88658 18 55579947 55579947 G A SNP LOC100131971 XM_001722472 human genbank 54_36p 1 model missense c.178 p.D60N 1 NULL - - pseudogene ASCC3 10973 genome.wustl.edu 36 6 101161625 101161625 + Missense_Mutation SNP T T C novel Unknown TCGA-13-0910-01A-01W-0421-09 TCGA-13-0910-10A-01W-0421-09 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 26cebe0b-b7a7-431e-bc12-7fda22af72f3 bdd22b11-0fe4-4879-a234-46c4b5d88658 6 101161625 101161625 T C SNP ASCC3 NM_006828 human genbank 54_36p -1 validated missense c.4846 p.I1616V 1 HMMPfam_Helicase_C HMMPfam_Helicase_C;HMMPfam_Sec63;HMMPfam_DEAD;superfamily_P-loop containing nucleoside triphosphate hydrolases - no_errors C6orf81 221481 genome.wustl.edu 36 6 35823062 35823062 + Missense_Mutation SNP C C T novel Unknown TCGA-13-0910-01A-01W-0421-09 TCGA-13-0910-10A-01W-0421-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 26cebe0b-b7a7-431e-bc12-7fda22af72f3 bdd22b11-0fe4-4879-a234-46c4b5d88658 6 35823062 35823062 C T SNP C6orf81 NM_145028 human genbank 54_36p 1 predicted missense c.572 p.T191M 0.23 NULL - - no_errors HCRTR2 3062 genome.wustl.edu 36 6 55227992 55227992 + Missense_Mutation SNP C C T novel Unknown TCGA-13-0910-01A-01W-0421-09 TCGA-13-0910-10A-01W-0421-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 26cebe0b-b7a7-431e-bc12-7fda22af72f3 bdd22b11-0fe4-4879-a234-46c4b5d88658 6 55227992 55227992 C T SNP HCRTR2 NM_001526 human genbank 54_36p 1 reviewed missense c.502 p.R168W 0.996 NULL - - no_errors KLHL32 114792 genome.wustl.edu 36 6 97639767 97639767 + Silent SNP C C T novel Unknown TCGA-13-0910-01A-01W-0421-09 TCGA-13-0910-10A-01W-0421-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 26cebe0b-b7a7-431e-bc12-7fda22af72f3 bdd22b11-0fe4-4879-a234-46c4b5d88658 6 97639767 97639767 C T SNP KLHL32 NM_052904 human genbank 54_36p 1 validated silent c.456 p.D152 1 NULL - - no_errors PRSS55 203074 genome.wustl.edu 36 8 10424530 10424530 + Missense_Mutation SNP G G T novel Unknown TCGA-13-0910-01A-01W-0421-09 TCGA-13-0910-10A-01W-0421-09 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 26cebe0b-b7a7-431e-bc12-7fda22af72f3 bdd22b11-0fe4-4879-a234-46c4b5d88658 8 10424530 10424530 G T SNP UNQ9391 NM_198464 human genbank 54_36p 1 validated missense c.258 p.Q86H 0.98 HMMPfam_Trypsin HMMPfam_Trypsin;superfamily_Trypsin-like serine proteases - no_errors LOC642943 642943 genome.wustl.edu 36 9 94688720 94688720 + RNA SNP A A G novel Unknown TCGA-13-0910-01A-01W-0421-09 TCGA-13-0910-10A-01W-0421-09 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 26cebe0b-b7a7-431e-bc12-7fda22af72f3 bdd22b11-0fe4-4879-a234-46c4b5d88658 9 94688720 94688720 A G SNP LOC642943 XR_039168 human genbank 54_36p 1 model rna NULL NULL 0.01 - - - pseudogene ZNF711 7552 genome.wustl.edu 36 X 84406028 84406028 + Silent SNP G G A novel Unknown TCGA-13-0910-01A-01W-0421-09 TCGA-13-0910-10A-01W-0421-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 26cebe0b-b7a7-431e-bc12-7fda22af72f3 bdd22b11-0fe4-4879-a234-46c4b5d88658 X 84406028 84406028 G A SNP ZNF711 NM_021998 human genbank 54_36p 1 reviewed silent c.714 p.G238 1 HMMPfam_Zfx_Zfy_act HMMPfam_Zfx_Zfy_act;HMMPfam_zf-C2H2;superfamily_C2H2 and C2HC zinc fingers - no_errors