Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID chromosome_name start stop reference variant type gene_name transcript_name transcript_species transcript_source transcript_version strand transcript_status trv_type c_position amino_acid_change ucsc_cons domain all_domains deletion_substructures transcript_error UBE4B 10277 genome.wustl.edu 36 1 10161345 10161345 + Silent SNP G G C novel Unknown TCGA-13-0920-01A-01W-0421-09 TCGA-13-0920-10A-01W-0421-09 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 2e28969b-c9a9-41ec-80bf-f583197b7f92 83a80d56-e463-4096-8c17-a44000f80f66 1 10161345 10161345 G C SNP UBE4B NM_001105562 human genbank 54_36p 1 reviewed silent c.3582 p.G1194 0.97 NULL - - no_errors HMGCS2 3158 genome.wustl.edu 36 1 120097460 120097460 + Silent SNP G G A Unknown TCGA-13-0920-01A-01W-0421-09 TCGA-13-0920-10A-01W-0421-09 G G G A G G Unknown Valid Somatic Phase_III Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 2e28969b-c9a9-41ec-80bf-f583197b7f92 83a80d56-e463-4096-8c17-a44000f80f66 1 120097460 120097460 G A SNP HMGCS2 NM_005518 human genbank 54_36p -1 validated silent c.1260 p.F420 0.962 HMMPfam_HMG_CoA_synt_C HMMPfam_HMG_CoA_synt_N,HMMPfam_HMG_CoA_synt_C,superfamily_Thiolase-like - no_errors PIP5K1A 8394 genome.wustl.edu 36 1 149471789 149471789 + Missense_Mutation SNP C C G novel Unknown TCGA-13-0920-01A-01W-0421-09 TCGA-13-0920-10A-01W-0421-09 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 2e28969b-c9a9-41ec-80bf-f583197b7f92 83a80d56-e463-4096-8c17-a44000f80f66 1 149471789 149471789 C G SNP PIP5K1A NM_003557 human genbank 54_36p 1 validated missense c.586 p.P196A 1 HMMPfam_PIP5K HMMPfam_PIP5K;superfamily_SAICAR synthase-like - no_errors CGN 57530 genome.wustl.edu 36 1 149775932 149775932 + Missense_Mutation SNP G G A novel Unknown TCGA-13-0920-01A-01W-0421-09 TCGA-13-0920-10A-01W-0421-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 2e28969b-c9a9-41ec-80bf-f583197b7f92 83a80d56-e463-4096-8c17-a44000f80f66 1 149775932 149775932 G A SNP CGN NM_020770 human genbank 54_36p 1 validated missense c.3409 p.E1137K 1 NULL - - no_errors FLG2 388698 genome.wustl.edu 36 1 150594500 150594500 + Missense_Mutation SNP G G T novel Unknown TCGA-13-0920-01A-01W-0421-09 TCGA-13-0920-10A-01W-0421-09 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 2e28969b-c9a9-41ec-80bf-f583197b7f92 83a80d56-e463-4096-8c17-a44000f80f66 1 150594500 150594500 G T SNP FLG2 NM_001014342 human genbank 54_36p -1 provisional missense c.2386 p.Q796K NULL - - no_errors ITLN1 55600 genome.wustl.edu 36 1 159117595 159117595 + Silent SNP C C A novel Unknown TCGA-13-0920-01A-01W-0421-09 TCGA-13-0920-10A-01W-0421-09 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 2e28969b-c9a9-41ec-80bf-f583197b7f92 83a80d56-e463-4096-8c17-a44000f80f66 1 159117595 159117595 C A SNP ITLN1 NM_017625 human genbank 54_36p -1 validated silent c.537 p.L179 0.07 NULL HMMPfam_Fibrinogen_C;superfamily_Fibrinogen C-terminal domain-like - no_errors DDR2 4921 genome.wustl.edu 36 1 160989543 160989543 + Silent SNP C C T novel Unknown TCGA-13-0920-01A-01W-0421-09 TCGA-13-0920-10A-01W-0421-09 C C C T C C Unknown Valid Somatic 4 Capture Sanger_PCR_WGA 1 dbGAP Illumina GAIIx 2e28969b-c9a9-41ec-80bf-f583197b7f92 83a80d56-e463-4096-8c17-a44000f80f66 1 160989543 160989543 C T SNP DDR2 NM_001014796 human genbank 54_36p 1 reviewed silent c.117 p.G39 1 NULL F5_F8_type_C;HMMPfam_F5_F8_type_C;Pkinase_Tyr;HMMPfam_Pkinase_Tyr - no_errors ARHGEF19 128272 genome.wustl.edu 36 1 16397715 16397715 + Missense_Mutation SNP T T G novel Unknown TCGA-13-0920-01A-01W-0421-09 TCGA-13-0920-10A-01W-0421-09 T T T G T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 2e28969b-c9a9-41ec-80bf-f583197b7f92 83a80d56-e463-4096-8c17-a44000f80f66 1 16397715 16397715 T G SNP ARHGEF19 NM_153213 human genbank 54_36p -1 provisional missense c.2363 p.K788T 1 NULL - - no_errors TADA1 117143 genome.wustl.edu 36 1 165098153 165098153 + Missense_Mutation SNP G G C novel Unknown TCGA-13-0920-01A-01W-0421-09 TCGA-13-0920-10A-01W-0421-09 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 2e28969b-c9a9-41ec-80bf-f583197b7f92 83a80d56-e463-4096-8c17-a44000f80f66 1 165098153 165098153 G C SNP TADA1L NM_053053 human genbank 54_36p -1 validated missense c.451 p.L151V 1 NULL - - no_errors F5 2153 genome.wustl.edu 36 1 167750264 167750264 + Missense_Mutation SNP T T A novel Unknown TCGA-13-0920-01A-01W-0421-09 TCGA-13-0920-10A-01W-0421-09 T T T A T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 2e28969b-c9a9-41ec-80bf-f583197b7f92 83a80d56-e463-4096-8c17-a44000f80f66 1 167750264 167750264 T A SNP F5 NM_000130 human genbank 54_36p -1 reviewed missense c.6586 p.I2196F 1 NULL - - no_errors UBR4 23352 genome.wustl.edu 36 1 19316463 19316463 + Silent SNP C C T Unknown TCGA-13-0920-01A-01W-0421-09 TCGA-13-0920-10A-01W-0421-09 C C C T C C Unknown Valid Somatic Phase_III Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 2e28969b-c9a9-41ec-80bf-f583197b7f92 83a80d56-e463-4096-8c17-a44000f80f66 1 19316463 19316463 C T SNP UBR4 NM_020765 human genbank 54_36p -1 validated silent c.10662 p.T3554 0.971 NULL - - no_errors CR1 1378 genome.wustl.edu 36 1 205807862 205807862 + Silent SNP C C A novel Unknown TCGA-13-0920-01A-01W-0421-09 TCGA-13-0920-10A-01W-0421-09 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 2e28969b-c9a9-41ec-80bf-f583197b7f92 83a80d56-e463-4096-8c17-a44000f80f66 1 205807862 205807862 C A SNP CR1 NM_000651 human genbank 54_36p 1 reviewed silent c.4023 p.P1341 0.05 NULL - - no_errors USH2A 7399 genome.wustl.edu 36 1 214030129 214030129 + Nonsense_Mutation SNP A A T novel Unknown TCGA-13-0920-01A-01W-0421-09 TCGA-13-0920-10A-01W-0421-09 A A A T A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 2e28969b-c9a9-41ec-80bf-f583197b7f92 83a80d56-e463-4096-8c17-a44000f80f66 1 214030129 214030129 A T SNP USH2A NM_206933 human genbank 54_36p -1 reviewed nonsense c.10077 p.C3359* 1 NULL - - no_errors OR2L1P 26247 genome.wustl.edu 36 1 246220752 246220752 + RNA SNP C C T novel Unknown TCGA-13-0920-01A-01W-0421-09 TCGA-13-0920-10A-01W-0421-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 2e28969b-c9a9-41ec-80bf-f583197b7f92 83a80d56-e463-4096-8c17-a44000f80f66 1 246220752 246220752 C T SNP OR2L1P NR_002145 human genbank 54_36p 1 provisional rna NULL NULL 0.02 - - - pseudogene LOC729828 729828 genome.wustl.edu 36 1 81961201 81961201 + RNA SNP T T C novel Unknown TCGA-13-0920-01A-01W-0421-09 TCGA-13-0920-10A-01W-0421-09 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 2e28969b-c9a9-41ec-80bf-f583197b7f92 83a80d56-e463-4096-8c17-a44000f80f66 1 81961201 81961201 T C SNP LOC729828 XR_015671 human genbank 54_36p 1 model rna NULL NULL 1 - - - pseudogene GBF1 8729 genome.wustl.edu 36 10 104101604 104101604 + Silent SNP G G C novel Unknown TCGA-13-0920-01A-01W-0421-09 TCGA-13-0920-10A-01W-0421-09 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 2e28969b-c9a9-41ec-80bf-f583197b7f92 83a80d56-e463-4096-8c17-a44000f80f66 10 104101604 104101604 G C SNP GBF1 NM_004193 human genbank 54_36p 1 provisional silent c.429 p.L143 1 NULL - - no_errors TACC2 10579 genome.wustl.edu 36 10 123833228 123833228 + Missense_Mutation SNP C C T novel Unknown TCGA-13-0920-01A-01W-0421-09 TCGA-13-0920-10A-01W-0421-09 C C C T C C Unknown Valid Somatic 4 Capture Sanger_PCR_WGA 1 dbGAP Illumina GAIIx 2e28969b-c9a9-41ec-80bf-f583197b7f92 83a80d56-e463-4096-8c17-a44000f80f66 10 123833228 123833228 C T SNP TACC2 NM_206862 human genbank 54_36p 1 reviewed missense c.1223 p.S408F NULL HMMPfam_TACC - no_errors DHX32 55760 genome.wustl.edu 36 10 127516947 127516947 + Splice_Site SNP C C G novel Unknown TCGA-13-0920-01A-01W-0421-09 TCGA-13-0920-10A-01W-0421-09 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 2e28969b-c9a9-41ec-80bf-f583197b7f92 83a80d56-e463-4096-8c17-a44000f80f66 10 127516947 127516947 C G SNP DHX32 NM_018180 human genbank 54_36p -1 reviewed splice_site c.1882-1 e10-1 1 - - - no_errors IGHG2 3501 genome.wustl.edu 36 14 105181466 105181466 + Missense_Mutation SNP C C G novel Unknown TCGA-13-0920-01A-01W-0421-09 TCGA-13-0920-10A-01W-0421-09 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 2e28969b-c9a9-41ec-80bf-f583197b7f92 83a80d56-e463-4096-8c17-a44000f80f66 14 105181466 105181466 C G SNP IGHG2 ENST00000390544 human ensembl 54_36p -1 known missense c.310 p.V104L 0.02 NULL - - no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region DLAT 1737 genome.wustl.edu 36 11 111404779 111404779 + Missense_Mutation SNP C C G novel Unknown TCGA-13-0920-01A-01W-0421-09 TCGA-13-0920-10A-01W-0421-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 2e28969b-c9a9-41ec-80bf-f583197b7f92 83a80d56-e463-4096-8c17-a44000f80f66 11 111404779 111404779 C G SNP DLAT NM_001931 human genbank 54_36p 1 validated missense c.560 p.P187R 0.63 NULL HMMPfam_Biotin_lipoyl;HMMPfam_2-oxoacid_dh;HMMPfam_E3_binding;superfamily_Single hybrid motif;superfamily_Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex;superfamily_CoA-dependent acyltransferases - no_errors GYLTL1B 120071 genome.wustl.edu 36 11 45904852 45904852 + Silent SNP G G A novel Unknown TCGA-13-0920-01A-01W-0421-09 TCGA-13-0920-10A-01W-0421-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 2e28969b-c9a9-41ec-80bf-f583197b7f92 83a80d56-e463-4096-8c17-a44000f80f66 11 45904852 45904852 G A SNP GYLTL1B NM_152312 human genbank 54_36p 1 validated silent c.1179 p.L393 1 NULL HMMPfam_Glyco_transf_8;superfamily_Nucleotide-diphospho-sugar transferases - no_errors OR5I1 10798 genome.wustl.edu 36 11 55460276 55460276 + Silent SNP G G A novel Unknown TCGA-13-0920-01A-01W-0421-09 TCGA-13-0920-10A-01W-0421-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 2e28969b-c9a9-41ec-80bf-f583197b7f92 83a80d56-e463-4096-8c17-a44000f80f66 11 55460276 55460276 G A SNP OR5I1 NM_006637 human genbank 54_36p -1 reviewed silent c.177 p.T59 0 NULL - - no_errors OR10AG1 282770 genome.wustl.edu 36 11 55491934 55491934 + Silent SNP C C T novel Unknown TCGA-13-0920-01A-01W-0421-09 TCGA-13-0920-10A-01W-0421-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 2e28969b-c9a9-41ec-80bf-f583197b7f92 83a80d56-e463-4096-8c17-a44000f80f66 11 55491934 55491934 C T SNP OR10AG1 NM_001005491 human genbank 54_36p -1 provisional silent c.582 p.A194 0 NULL - - no_errors AHNAK 79026 genome.wustl.edu 36 11 62041703 62041703 + Missense_Mutation SNP A A C novel Unknown TCGA-13-0920-01A-01W-0421-09 TCGA-13-0920-10A-01W-0421-09 A A A C A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 2e28969b-c9a9-41ec-80bf-f583197b7f92 83a80d56-e463-4096-8c17-a44000f80f66 11 62041703 62041703 A C SNP AHNAK NM_001620 human genbank 54_36p -1 validated missense c.16762 p.L5588V NULL HMMPfam_PDZ;superfamily_PDZ domain-like;HMMPfam_CheC - no_errors SF3B2 10992 genome.wustl.edu 36 11 65585750 65585750 + Silent SNP A A G novel Unknown TCGA-13-0920-01A-01W-0421-09 TCGA-13-0920-10A-01W-0421-09 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 2e28969b-c9a9-41ec-80bf-f583197b7f92 83a80d56-e463-4096-8c17-a44000f80f66 11 65585750 65585750 A G SNP SF3B2 NM_006842 human genbank 54_36p 1 reviewed silent c.1797 p.T599 0.1 NULL - - no_errors HCFC2 29915 genome.wustl.edu 36 12 103011382 103011382 + Missense_Mutation SNP C C T novel Unknown TCGA-13-0920-01A-01W-0421-09 TCGA-13-0920-10A-01W-0421-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 2e28969b-c9a9-41ec-80bf-f583197b7f92 83a80d56-e463-4096-8c17-a44000f80f66 12 103011382 103011382 C T SNP HCFC2 NM_013320 human genbank 54_36p 1 reviewed missense c.1373 p.T458M NULL - - no_errors LRP6 4040 genome.wustl.edu 36 12 12165331 12165331 + Missense_Mutation SNP G G T novel Unknown TCGA-13-0920-01A-01W-0421-09 TCGA-13-0920-10A-01W-0421-09 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 2e28969b-c9a9-41ec-80bf-f583197b7f92 83a80d56-e463-4096-8c17-a44000f80f66 12 12165331 12165331 G T SNP LRP6 NM_002336 human genbank 54_36p -1 validated missense c.4838 p.S1613Y 1 NULL HMMPfam_Ldl_recept_b;HMMPfam_Ldl_recept_a;HMMPfam_EGF;superfamily_EGF/Laminin;superfamily_LDL receptor-like module;superfamily_YWTD domain - no_errors ITGA5 3678 genome.wustl.edu 36 12 53081716 53081716 + Missense_Mutation SNP G G C novel Unknown TCGA-13-0920-01A-01W-0421-09 TCGA-13-0920-10A-01W-0421-09 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 2e28969b-c9a9-41ec-80bf-f583197b7f92 83a80d56-e463-4096-8c17-a44000f80f66 12 53081716 53081716 G C SNP ITGA5 NM_002205 human genbank 54_36p -1 reviewed missense c.2307 p.S769R 1 HMMPfam_Integrin_alpha2 HMMPfam_Integrin_alpha;HMMPfam_FG-GAP;HMMPfam_Integrin_alpha2;superfamily_Integrin domains;superfamily_Integrin alpha N-terminal domain - no_errors NAB2 4665 genome.wustl.edu 36 12 55771786 55771786 + Missense_Mutation SNP G G A novel Unknown TCGA-13-0920-01A-01W-0421-09 TCGA-13-0920-10A-01W-0421-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 2e28969b-c9a9-41ec-80bf-f583197b7f92 83a80d56-e463-4096-8c17-a44000f80f66 12 55771786 55771786 G A SNP NAB2 NM_005967 human genbank 54_36p 1 reviewed missense c.695 p.G232D 1 NULL - - no_errors SLAIN1 122060 genome.wustl.edu 36 13 77216405 77216405 + Silent SNP C C T novel Unknown TCGA-13-0920-01A-01W-0421-09 TCGA-13-0920-10A-01W-0421-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 2e28969b-c9a9-41ec-80bf-f583197b7f92 83a80d56-e463-4096-8c17-a44000f80f66 13 77216405 77216405 C T SNP SLAIN1 ENST00000377236 human ensembl 54_36p 1 known silent c.42 p.F14 NULL - - no_stop_codon:bad_bp_length_for_coding_region MYH7 4625 genome.wustl.edu 36 14 22957352 22957352 + Missense_Mutation SNP C C T novel Unknown TCGA-13-0920-01A-01W-0421-09 TCGA-13-0920-10A-01W-0421-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 2e28969b-c9a9-41ec-80bf-f583197b7f92 83a80d56-e463-4096-8c17-a44000f80f66 14 22957352 22957352 C T SNP MYH7 NM_000257 human genbank 54_36p -1 reviewed missense c.4076 p.R1359H 1 HMMPfam_Myosin_tail_1 HMMPfam_IQ;HMMPfam_Myosin_head;HMMPfam_Myosin_tail_1;HMMPfam_Myosin_N;superfamily_Prefoldin;superfamily_P-loop containing nucleoside triphosphate hydrolases - no_errors C14orf149 112849 genome.wustl.edu 36 14 59015712 59015712 + Missense_Mutation SNP C C G Unknown TCGA-13-0920-01A-01W-0421-09 TCGA-13-0920-10A-01W-0421-09 C C C G C C Unknown Valid Somatic Phase_III Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 2e28969b-c9a9-41ec-80bf-f583197b7f92 83a80d56-e463-4096-8c17-a44000f80f66 14 59015712 59015712 C G SNP C14orf149 NM_144581 human genbank 54_36p -1 provisional missense c.619 p.A207P 1 HMMPfam_Pro_racemase HMMPfam_Pro_racemase,superfamily_Diaminopimelate epimerase-like - no_errors NRXN3 9369 genome.wustl.edu 36 14 77779249 77779249 + Silent SNP C C G novel Unknown TCGA-13-0920-01A-01W-0421-09 TCGA-13-0920-10A-01W-0421-09 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 2e28969b-c9a9-41ec-80bf-f583197b7f92 83a80d56-e463-4096-8c17-a44000f80f66 14 77779249 77779249 C G SNP NRXN3 ENST00000330071 human ensembl 54_36p 1 known silent c.60 p.S20 0.463 NULL HMMPfam_EGF,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2 - no_errors FLRT2 23768 genome.wustl.edu 36 14 85159438 85159438 + Silent SNP C C T novel Unknown TCGA-13-0920-01A-01W-0421-09 TCGA-13-0920-10A-01W-0421-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 2e28969b-c9a9-41ec-80bf-f583197b7f92 83a80d56-e463-4096-8c17-a44000f80f66 14 85159438 85159438 C T SNP FLRT2 NM_013231 human genbank 54_36p 1 reviewed silent c.1827 p.I609 1 NULL HMMPfam_LRRNT;HMMPfam_LRRCT;HMMPfam_LRR_1;HMMPfam_fn3;superfamily_Fibronectin type III;superfamily_L domain-like - no_errors uc003wae.2 0 genome.wustl.edu 36 7 142108338 142108338 + Silent SNP T T C novel Unknown TCGA-13-0920-01A-01W-0421-09 TCGA-13-0920-10A-01W-0421-09 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 2e28969b-c9a9-41ec-80bf-f583197b7f92 83a80d56-e463-4096-8c17-a44000f80f66 7 142108338 142108338 T C SNP uc003wae.2 ENST00000390400 human ensembl 54_36p 1 known silent c.117 p.F39 NULL - - no_stop_codon:bad_bp_length_for_coding_region uc002goi.1 0 genome.wustl.edu 36 17 14623918 14623918 + Nonsense_Mutation SNP A A T novel Unknown TCGA-13-0920-01A-01W-0421-09 TCGA-13-0920-10A-01W-0421-09 A A A T A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 2e28969b-c9a9-41ec-80bf-f583197b7f92 83a80d56-e463-4096-8c17-a44000f80f66 17 14623918 14623918 A T SNP uc002goi.1 ENST00000379640 human ensembl 54_36p -1 known nonsense c.294 p.C98* NULL - - no_errors CCDC33 80125 genome.wustl.edu 36 15 72414492 72414492 + Missense_Mutation SNP C C A Unknown TCGA-13-0920-01A-01W-0421-09 TCGA-13-0920-10A-01W-0421-09 C C C A C C Unknown Valid Somatic Phase_III Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 2e28969b-c9a9-41ec-80bf-f583197b7f92 83a80d56-e463-4096-8c17-a44000f80f66 15 72414492 72414492 C A SNP CCDC33 NM_182791 human genbank 54_36p 1 validated missense c.1030 p.P344T 0.025 NULL - - no_errors CYP1A1 1543 genome.wustl.edu 36 15 72799903 72799903 + Missense_Mutation SNP G G T novel Unknown TCGA-13-0920-01A-01W-0421-09 TCGA-13-0920-10A-01W-0421-09 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 2e28969b-c9a9-41ec-80bf-f583197b7f92 83a80d56-e463-4096-8c17-a44000f80f66 15 72799903 72799903 G T SNP CYP1A1 NM_000499 human genbank 54_36p -1 reviewed missense c.1519 p.Q507K 0.94 NULL HMMPfam_p450;superfamily_Cytochrome P450 - no_errors ZSCAN2 54993 genome.wustl.edu 36 15 82964862 82964862 + Silent SNP G G C novel Unknown TCGA-13-0920-01A-01W-0421-09 TCGA-13-0920-10A-01W-0421-09 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 2e28969b-c9a9-41ec-80bf-f583197b7f92 83a80d56-e463-4096-8c17-a44000f80f66 15 82964862 82964862 G C SNP ZSCAN2 NM_181877 human genbank 54_36p 1 reviewed silent c.432 p.G144 0.1 NULL HMMPfam_SCAN;HMMPfam_zf-C2H2;superfamily_C2H2 and C2HC zinc fingers - no_errors SEZ6L2 26470 genome.wustl.edu 36 16 29816744 29816744 + Missense_Mutation SNP A T T novel Unknown TCGA-13-0920-01A-01W-0421-09 TCGA-13-0920-10A-01W-0421-09 A A T T A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 2e28969b-c9a9-41ec-80bf-f583197b7f92 83a80d56-e463-4096-8c17-a44000f80f66 16 29816744 29816744 A T SNP SEZ6L2 NM_201575 human genbank 54_36p -1 validated missense c.142 p.S48T 0.94 NULL HMMPfam_Sushi;HMMPfam_CUB;superfamily_Spermadhesin CUB domain;superfamily_Complement control module/SCR domain - no_errors C16orf58 64755 genome.wustl.edu 36 16 31412598 31412598 + Missense_Mutation SNP C C T novel Unknown TCGA-13-0920-01A-01W-0421-09 TCGA-13-0920-10A-01W-0421-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 2e28969b-c9a9-41ec-80bf-f583197b7f92 83a80d56-e463-4096-8c17-a44000f80f66 16 31412598 31412598 C T SNP C16orf58 NM_022744 human genbank 54_36p -1 predicted missense c.785 p.G262E NULL - - no_errors CDH8 1006 genome.wustl.edu 36 16 60612766 60612766 + Missense_Mutation SNP G G T novel Unknown TCGA-13-0920-01A-01W-0421-09 TCGA-13-0920-10A-01W-0421-09 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 2e28969b-c9a9-41ec-80bf-f583197b7f92 83a80d56-e463-4096-8c17-a44000f80f66 16 60612766 60612766 G T SNP CDH8 NM_001796 human genbank 54_36p -1 reviewed missense c.43 p.P15T 1 NULL HMMPfam_Cadherin_C;HMMPfam_Cadherin;superfamily_Cadherin-like - no_errors IRF8 3394 genome.wustl.edu 36 16 84502761 84502761 + Missense_Mutation SNP A A G novel Unknown TCGA-13-0920-01A-01W-0421-09 TCGA-13-0920-10A-01W-0421-09 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 2e28969b-c9a9-41ec-80bf-f583197b7f92 83a80d56-e463-4096-8c17-a44000f80f66 16 84502761 84502761 A G SNP IRF8 NM_002163 human genbank 54_36p 1 reviewed missense c.443 p.K148R 1 NULL - - no_errors LOC644422 644422 genome.wustl.edu 36 17 16461353 16461353 + RNA SNP G G C novel Unknown TCGA-13-0920-01A-01W-0421-09 TCGA-13-0920-10A-01W-0421-09 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 2e28969b-c9a9-41ec-80bf-f583197b7f92 83a80d56-e463-4096-8c17-a44000f80f66 17 16461353 16461353 G C SNP LOC644422 XR_017541 human genbank 54_36p -1 model rna NULL NULL 1 - - - pseudogene G6PC 2538 genome.wustl.edu 36 17 38316805 38316805 + Missense_Mutation SNP G G A novel Unknown TCGA-13-0920-01A-01W-0421-09 TCGA-13-0920-10A-01W-0421-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 2e28969b-c9a9-41ec-80bf-f583197b7f92 83a80d56-e463-4096-8c17-a44000f80f66 17 38316805 38316805 G A SNP G6PC NM_000151 human genbank 54_36p 1 reviewed missense c.910 p.V304I 0.12 NULL HMMPfam_PAP2;superfamily_Acid phosphatase/Vanadium-dependent haloperoxidase - no_errors INTS2 57508 genome.wustl.edu 36 17 57301941 57301941 + Missense_Mutation SNP C C A novel Unknown TCGA-13-0920-01A-01W-0421-09 TCGA-13-0920-10A-01W-0421-09 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 2e28969b-c9a9-41ec-80bf-f583197b7f92 83a80d56-e463-4096-8c17-a44000f80f66 17 57301941 57301941 C A SNP INTS2 NM_020748 human genbank 54_36p -1 validated missense c.2993 p.C998F 1 NULL - - no_errors TP53 7157 genome.wustl.edu 36 17 7520114 7520114 + Nonsense_Mutation SNP G A A novel Unknown TCGA-13-0920-01A-01W-0421-09 TCGA-13-0920-10A-01W-0421-09 G G A A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 2e28969b-c9a9-41ec-80bf-f583197b7f92 83a80d56-e463-4096-8c17-a44000f80f66 17 7520114 7520114 G A SNP TP53 NM_000546 human genbank 54_36p -1 reviewed nonsense c.298 p.Q100* 0.6 HMMPfam_P53 superfamily_p53-like transcription factors;superfamily_p53 tetramerization domain;P53_tetramer;HMMPfam_P53_tetramer;P53;HMMPfam_P53;P53_TAD;HMMPfam_P53_TAD - no_errors EIF4A3 9775 genome.wustl.edu 36 17 75724488 75724488 + Missense_Mutation SNP C C G novel Unknown TCGA-13-0920-01A-01W-0421-09 TCGA-13-0920-10A-01W-0421-09 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 2e28969b-c9a9-41ec-80bf-f583197b7f92 83a80d56-e463-4096-8c17-a44000f80f66 17 75724488 75724488 C G SNP EIF4A3 NM_014740 human genbank 54_36p -1 reviewed missense c.1129 p.A377P 1 NULL - - no_errors DNAH2 146754 genome.wustl.edu 36 17 7603513 7603513 + Missense_Mutation SNP G G A novel Unknown TCGA-13-0920-01A-01W-0421-09 TCGA-13-0920-10A-01W-0421-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 2e28969b-c9a9-41ec-80bf-f583197b7f92 83a80d56-e463-4096-8c17-a44000f80f66 17 7603513 7603513 G A SNP DNAH2 NM_020877 human genbank 54_36p 1 validated missense c.2497 p.E833K 1 NULL HMMPfam_Dynein_heavy;HMMPfam_AAA_5;HMMPfam_DHC_N1;HMMPfam_DHC_N2;superfamily_Spectrin repeat;superfamily_P-loop containing nucleoside triphosphate hydrolases - no_errors DSG1 1828 genome.wustl.edu 36 18 27168027 27168027 + Missense_Mutation SNP T T A novel Unknown TCGA-13-0920-01A-01W-0421-09 TCGA-13-0920-10A-01W-0421-09 T T T A T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 2e28969b-c9a9-41ec-80bf-f583197b7f92 83a80d56-e463-4096-8c17-a44000f80f66 18 27168027 27168027 T A SNP DSG1 NM_001942 human genbank 54_36p 1 reviewed missense c.869 p.I290N 0.22 HMMPfam_Cadherin HMMPfam_Cadherin_C;HMMPfam_Cadherin;superfamily_Cadherin-like - no_errors ZSCAN5B 342933 genome.wustl.edu 36 19 61395871 61395871 + Silent SNP A A G novel Unknown TCGA-13-0920-01A-01W-0421-09 TCGA-13-0920-10A-01W-0421-09 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 2e28969b-c9a9-41ec-80bf-f583197b7f92 83a80d56-e463-4096-8c17-a44000f80f66 19 61395871 61395871 A G SNP ZSCAN5B NM_001080456 human genbank 54_36p -1 validated silent c.219 p.N73 NULL - - no_errors MUC16 94025 genome.wustl.edu 36 19 8837817 8837817 + Silent SNP G G A Unknown TCGA-13-0920-01A-01W-0421-09 TCGA-13-0920-10A-01W-0421-09 G G G A G G Unknown Valid Somatic Phase_III Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 2e28969b-c9a9-41ec-80bf-f583197b7f92 83a80d56-e463-4096-8c17-a44000f80f66 19 8837817 8837817 G A SNP MUC16 NM_024690 human genbank 54_36p -1 validated silent c.42249 p.I14083 0.996 HMMPfam_SEA HMMPfam_SEA,superfamily_Immunoglobulin,superfamily_SEA domain - no_errors NMS 129521 genome.wustl.edu 36 2 100463390 100463390 + Missense_Mutation SNP G G T Unknown TCGA-13-0920-01A-01W-0421-09 TCGA-13-0920-10A-01W-0421-09 G G G T G G Unknown Valid Somatic Phase_III Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 2e28969b-c9a9-41ec-80bf-f583197b7f92 83a80d56-e463-4096-8c17-a44000f80f66 2 100463390 100463390 G T SNP NMS NM_001011717 human genbank 54_36p 1 provisional missense c.337 p.G113C 0.033 NULL - - no_errors PTPN4 5775 genome.wustl.edu 36 2 120284016 120284016 + Silent SNP T T A novel Unknown TCGA-13-0920-01A-01W-0421-09 TCGA-13-0920-10A-01W-0421-09 T T T A T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 2e28969b-c9a9-41ec-80bf-f583197b7f92 83a80d56-e463-4096-8c17-a44000f80f66 2 120284016 120284016 T A SNP PTPN4 NM_002830 human genbank 54_36p 1 reviewed silent c.117 p.T39 1 HMMPfam_Band_41 HMMPfam_Y_phosphatase;HMMPfam_Band_41;HMMPfam_PDZ;superfamily_PDZ domain-like;HMMPfam_FA;superfamily_Second domain of FERM;superfamily_PH domain-like;superfamily_(Phosphotyrosine protein) phosphatases II;superfamily_Ubiquitin-like - no_errors LRP2 4036 genome.wustl.edu 36 2 169741183 169741183 + Missense_Mutation SNP A A C novel Unknown TCGA-13-0920-01A-01W-0421-09 TCGA-13-0920-10A-01W-0421-09 A A A C A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 2e28969b-c9a9-41ec-80bf-f583197b7f92 83a80d56-e463-4096-8c17-a44000f80f66 2 169741183 169741183 A C SNP LRP2 NM_004525 human genbank 54_36p -1 validated missense c.10555 p.C3519G 1 HMMPfam_Ldl_recept_a HMMPfam_Ldl_recept_b;HMMPfam_Ldl_recept_a;HMMPfam_EGF;superfamily_Growth factor receptor domain;HMMPfam_EGF_CA;HMMPfam_EGF_2;superfamily_EGF/Laminin;superfamily_LDL receptor-like module;superfamily_YWTD domain - no_errors TTN 7273 genome.wustl.edu 36 2 179172732 179172732 + Missense_Mutation SNP G G A novel Unknown TCGA-13-0920-01A-01W-0421-09 TCGA-13-0920-10A-01W-0421-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 2e28969b-c9a9-41ec-80bf-f583197b7f92 83a80d56-e463-4096-8c17-a44000f80f66 2 179172732 179172732 G A SNP TTN NM_133378 human genbank 54_36p -1 reviewed missense c.48437 p.P16146L 1 NULL - - pseudogene:no_stop_codon:bad_bp_length_for_coding_region FAM171B 165215 genome.wustl.edu 36 2 187335610 187335610 + Nonsense_Mutation SNP G G T Unknown TCGA-13-0920-01A-01W-0421-09 TCGA-13-0920-10A-01W-0421-09 G G G T G G Unknown Valid Somatic Phase_III Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 2e28969b-c9a9-41ec-80bf-f583197b7f92 83a80d56-e463-4096-8c17-a44000f80f66 2 187335610 187335610 G T SNP FAM171B NM_177454 human genbank 54_36p 1 validated nonsense c.2296 p.G766* 1 NULL - - no_errors SP100 6672 genome.wustl.edu 36 2 231114890 231114890 + Silent SNP T T C novel Unknown TCGA-13-0920-01A-01W-0421-09 TCGA-13-0920-10A-01W-0421-09 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 2e28969b-c9a9-41ec-80bf-f583197b7f92 83a80d56-e463-4096-8c17-a44000f80f66 2 231114890 231114890 T C SNP SP100 NM_001080391 human genbank 54_36p 1 validated silent c.2443 p.L815 0.96 NULL - - no_errors MAPRE3 22924 genome.wustl.edu 36 2 27098614 27098614 + Silent SNP A A G novel Unknown TCGA-13-0920-01A-01W-0421-09 TCGA-13-0920-10A-01W-0421-09 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 2e28969b-c9a9-41ec-80bf-f583197b7f92 83a80d56-e463-4096-8c17-a44000f80f66 2 27098614 27098614 A G SNP MAPRE3 NM_012326 human genbank 54_36p 1 reviewed silent c.24 p.T8 0.97 NULL HMMPfam_CH;HMMPfam_EB1;superfamily_Calponin-homology domain CH-domain - no_errors EML4 27436 genome.wustl.edu 36 2 42409532 42409532 + Missense_Mutation SNP G G C Unknown TCGA-13-0920-01A-01W-0421-09 TCGA-13-0920-10A-01W-0421-09 G G G C G G Unknown Valid Somatic Phase_III Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 2e28969b-c9a9-41ec-80bf-f583197b7f92 83a80d56-e463-4096-8c17-a44000f80f66 2 42409532 42409532 G C SNP EML4 NM_019063 human genbank 54_36p 1 validated missense c.2344 p.V782L 1 NULL HMMPfam_WD40,HMMPfam_HELP,superfamily_WD40 repeat-like - no_errors CNNM4 26504 genome.wustl.edu 36 2 96791179 96791179 + Missense_Mutation SNP G G T novel Unknown TCGA-13-0920-01A-01W-0421-09 TCGA-13-0920-10A-01W-0421-09 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 2e28969b-c9a9-41ec-80bf-f583197b7f92 83a80d56-e463-4096-8c17-a44000f80f66 2 96791179 96791179 G T SNP CNNM4 NM_020184 human genbank 54_36p 1 validated missense c.716 p.G239V 1 HMMPfam_DUF21 superfamily_cAMP-binding domain-like;HMMPfam_CBS;HMMPfam_DUF21;superfamily_CBS-domain - no_errors CASS4 57091 genome.wustl.edu 36 20 54460399 54460399 + Missense_Mutation SNP A A T novel Unknown TCGA-13-0920-01A-01W-0421-09 TCGA-13-0920-10A-01W-0421-09 A A A T A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 2e28969b-c9a9-41ec-80bf-f583197b7f92 83a80d56-e463-4096-8c17-a44000f80f66 20 54460399 54460399 A T SNP CASS4 NM_020356 human genbank 54_36p 1 validated missense c.760 p.S254C NULL - - no_errors YTHDF1 54915 genome.wustl.edu 36 20 61305139 61305139 + Missense_Mutation SNP C C T novel Unknown TCGA-13-0920-01A-01W-0421-09 TCGA-13-0920-10A-01W-0421-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 2e28969b-c9a9-41ec-80bf-f583197b7f92 83a80d56-e463-4096-8c17-a44000f80f66 20 61305139 61305139 C T SNP YTHDF1 NM_017798 human genbank 54_36p -1 validated missense c.598 p.V200I 1 NULL - - no_errors RIPK4 54101 genome.wustl.edu 36 21 42034550 42034550 + Missense_Mutation SNP G G C novel Unknown TCGA-13-0920-01A-01W-0421-09 TCGA-13-0920-10A-01W-0421-09 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 2e28969b-c9a9-41ec-80bf-f583197b7f92 83a80d56-e463-4096-8c17-a44000f80f66 21 42034550 42034550 G C SNP RIPK4 NM_020639 human genbank 54_36p -1 reviewed missense c.1872 p.I624M 0.904 HMMPfam_Ank HMMPfam_Pkinase,HMMPfam_Ank,superfamily_Ankyrin repeat,superfamily_Protein kinase-like (PK-like) - no_errors SF3A1 10291 genome.wustl.edu 36 22 29072390 29072390 + Nonsense_Mutation SNP T T A novel Unknown TCGA-13-0920-01A-01W-0421-09 TCGA-13-0920-10A-01W-0421-09 T T T A T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 2e28969b-c9a9-41ec-80bf-f583197b7f92 83a80d56-e463-4096-8c17-a44000f80f66 22 29072390 29072390 T A SNP SF3A1 NM_005877 human genbank 54_36p -1 reviewed nonsense c.304 p.K102* 1 NULL - - no_errors ENTHD1 150350 genome.wustl.edu 36 22 38613618 38613618 + Silent SNP G G A novel Unknown TCGA-13-0920-01A-01W-0421-09 TCGA-13-0920-10A-01W-0421-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 2e28969b-c9a9-41ec-80bf-f583197b7f92 83a80d56-e463-4096-8c17-a44000f80f66 22 38613618 38613618 G A SNP ENTHD1 NM_152512 human genbank 54_36p -1 provisional silent c.81 p.N27 1 NULL - - no_errors DNAJB7 150353 genome.wustl.edu 36 22 39587615 39587615 + Missense_Mutation SNP G G C novel Unknown TCGA-13-0920-01A-01W-0421-09 TCGA-13-0920-10A-01W-0421-09 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 2e28969b-c9a9-41ec-80bf-f583197b7f92 83a80d56-e463-4096-8c17-a44000f80f66 22 39587615 39587615 G C SNP DNAJB7 NM_145174 human genbank 54_36p -1 provisional missense c.330 p.H110Q 1 NULL - - no_errors OR2J1 442185 genome.wustl.edu 36 6 29177624 29177624 + Missense_Mutation SNP A A T novel Unknown TCGA-13-0920-01A-01W-0421-09 TCGA-13-0920-10A-01W-0421-09 A A A T A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 2e28969b-c9a9-41ec-80bf-f583197b7f92 83a80d56-e463-4096-8c17-a44000f80f66 6 29177624 29177624 A T SNP OR2J1 ENST00000377171 human ensembl 54_36p 1 known missense c.926 p.E309V 0.01 NULL - - no_errors P2RY13 53829 genome.wustl.edu 36 3 152528881 152528881 + Missense_Mutation SNP C C A novel Unknown TCGA-13-0920-01A-01W-0421-09 TCGA-13-0920-10A-01W-0421-09 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 2e28969b-c9a9-41ec-80bf-f583197b7f92 83a80d56-e463-4096-8c17-a44000f80f66 3 152528881 152528881 C A SNP P2RY13 NM_176894 human genbank 54_36p -1 reviewed missense c.590 p.W197L 1 NULL - - no_errors P2RY13 53829 genome.wustl.edu 36 3 152528886 152528886 + Missense_Mutation SNP A A C novel Unknown TCGA-13-0920-01A-01W-0421-09 TCGA-13-0920-10A-01W-0421-09 A A A C A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 2e28969b-c9a9-41ec-80bf-f583197b7f92 83a80d56-e463-4096-8c17-a44000f80f66 3 152528886 152528886 A C SNP P2RY13 NM_176894 human genbank 54_36p -1 reviewed missense c.585 p.I195M 0.73 NULL - - no_errors SLITRK3 22865 genome.wustl.edu 36 3 166391031 166391031 + Silent SNP G G T novel Unknown TCGA-13-0920-01A-01W-0421-09 TCGA-13-0920-10A-01W-0421-09 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 2e28969b-c9a9-41ec-80bf-f583197b7f92 83a80d56-e463-4096-8c17-a44000f80f66 3 166391031 166391031 G T SNP SLITRK3 NM_014926 human genbank 54_36p -1 validated silent c.282 p.T94 1 NULL HMMPfam_LRR_1;superfamily_L domain-like - no_errors RTP3 83597 genome.wustl.edu 36 3 46517224 46517224 + Missense_Mutation SNP C C A novel Unknown TCGA-13-0920-01A-01W-0421-09 TCGA-13-0920-10A-01W-0421-09 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 2e28969b-c9a9-41ec-80bf-f583197b7f92 83a80d56-e463-4096-8c17-a44000f80f66 3 46517224 46517224 C A SNP RTP3 NM_031440 human genbank 54_36p 1 provisional missense c.530 p.P177Q 0.04 NULL - - no_errors PTPRG 5793 genome.wustl.edu 36 3 62223519 62223519 + Missense_Mutation SNP C C A novel Unknown TCGA-13-0920-01A-01W-0421-09 TCGA-13-0920-10A-01W-0421-09 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 2e28969b-c9a9-41ec-80bf-f583197b7f92 83a80d56-e463-4096-8c17-a44000f80f66 3 62223519 62223519 C A SNP PTPRG NM_002841 human genbank 54_36p 1 reviewed missense c.2566 p.Q856K 1 NULL Y_phosphatase;HMMPfam_Y_phosphatase;Carb_anhydrase;HMMPfam_Carb_anhydrase;fn3;HMMPfam_fn3 - no_errors ADH1A 124 genome.wustl.edu 36 4 100427037 100427037 + Silent SNP G G A novel Unknown TCGA-13-0920-01A-01W-0421-09 TCGA-13-0920-10A-01W-0421-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 2e28969b-c9a9-41ec-80bf-f583197b7f92 83a80d56-e463-4096-8c17-a44000f80f66 4 100427037 100427037 G A SNP ADH1A NM_000667 human genbank 54_36p -1 reviewed silent c.252 p.V84 0.96 HMMPfam_ADH_N superfamily_GroES-like;HMMPfam_ADH_zinc_N;HMMPfam_ADH_N;superfamily_NAD(P)-binding Rossmann-fold domains - no_errors RPS3A 6189 genome.wustl.edu 36 4 152243643 152243643 + Silent SNP G G A Unknown TCGA-13-0920-01A-01W-0421-09 TCGA-13-0920-10A-01W-0421-09 G G G A G G Unknown Valid Somatic Phase_III Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 2e28969b-c9a9-41ec-80bf-f583197b7f92 83a80d56-e463-4096-8c17-a44000f80f66 4 152243643 152243643 G A SNP RPS3A NM_001006 human genbank 54_36p 1 reviewed silent c.525 p.E175 1 HMMPfam_Ribosomal_S3Ae HMMPfam_Ribosomal_S3Ae - no_errors KLKB1 3818 genome.wustl.edu 36 4 187414210 187414210 + Silent SNP C C A novel Unknown TCGA-13-0920-01A-01W-0421-09 TCGA-13-0920-10A-01W-0421-09 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 2e28969b-c9a9-41ec-80bf-f583197b7f92 83a80d56-e463-4096-8c17-a44000f80f66 4 187414210 187414210 C A SNP KLKB1 NM_000892 human genbank 54_36p 1 reviewed silent c.1560 p.T520 0.996 NULL - - no_errors ANAPC4 29945 genome.wustl.edu 36 4 25026255 25026255 + Silent SNP A A G novel Unknown TCGA-13-0920-01A-01W-0421-09 TCGA-13-0920-10A-01W-0421-09 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 2e28969b-c9a9-41ec-80bf-f583197b7f92 83a80d56-e463-4096-8c17-a44000f80f66 4 25026255 25026255 A G SNP ANAPC4 NM_013367 human genbank 54_36p 1 reviewed silent c.1896 p.R632 0.98 NULL superfamily_WD40 repeat-like - no_errors RGS12 6002 genome.wustl.edu 36 4 3289212 3289212 + Missense_Mutation SNP C C G novel Unknown TCGA-13-0920-01A-01W-0421-09 TCGA-13-0920-10A-01W-0421-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 2e28969b-c9a9-41ec-80bf-f583197b7f92 83a80d56-e463-4096-8c17-a44000f80f66 4 3289212 3289212 C G SNP RGS12 NM_198229 human genbank 54_36p 1 reviewed missense c.1517 p.S506C 0 NULL HMMPfam_RGS;HMMPfam_PDZ;superfamily_PDZ domain-like;HMMPfam_GoLoco;HMMPfam_RBD;superfamily_Regulator of G-protein signaling RGS;superfamily_PH domain-like;superfamily_Ubiquitin-like - no_errors ZBTB49 166793 genome.wustl.edu 36 4 4355335 4355335 + Missense_Mutation SNP G G C novel Unknown TCGA-13-0920-01A-01W-0421-09 TCGA-13-0920-10A-01W-0421-09 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 2e28969b-c9a9-41ec-80bf-f583197b7f92 83a80d56-e463-4096-8c17-a44000f80f66 4 4355335 4355335 G C SNP ZNF509 NM_145291 human genbank 54_36p 1 validated missense c.871 p.D291H 0.16 NULL - - no_errors CLOCK 9575 genome.wustl.edu 36 4 56004807 56004807 + Missense_Mutation SNP T T A novel Unknown TCGA-13-0920-01A-01W-0421-09 TCGA-13-0920-10A-01W-0421-09 T T T A T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 2e28969b-c9a9-41ec-80bf-f583197b7f92 83a80d56-e463-4096-8c17-a44000f80f66 4 56004807 56004807 T A SNP CLOCK NM_004898 human genbank 54_36p -1 reviewed missense c.1706 p.Q569L 1 NULL HMMPfam_HLH;superfamily_HLH helix-loop-helix DNA-binding domain;HMMPfam_PAS_3;HMMPfam_PAS;superfamily_PYP-like sensor domain (PAS domain) - no_errors EPHA5 2044 genome.wustl.edu 36 4 65925337 65925337 + Silent SNP G G A novel Unknown TCGA-13-0920-01A-01W-0421-09 TCGA-13-0920-10A-01W-0421-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 2e28969b-c9a9-41ec-80bf-f583197b7f92 83a80d56-e463-4096-8c17-a44000f80f66 4 65925337 65925337 G A SNP EPHA5 NM_004439 human genbank 54_36p -1 reviewed silent c.1830 p.C610 1 NULL Ephrin_lbd;HMMPfam_Ephrin_lbd;Pkinase_Tyr;HMMPfam_Pkinase_Tyr;SAM_1;HMMPfam_SAM_1;fn3;HMMPfam_fn3;BmKX;HMMPfam_BmKX - no_errors HTN3 3347 genome.wustl.edu 36 4 70931083 70931083 + Missense_Mutation SNP A A T novel Unknown TCGA-13-0920-01A-01W-0421-09 TCGA-13-0920-10A-01W-0421-09 A A A T A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 2e28969b-c9a9-41ec-80bf-f583197b7f92 83a80d56-e463-4096-8c17-a44000f80f66 4 70931083 70931083 A T SNP HTN3 NM_000200 human genbank 54_36p 1 reviewed missense c.37 p.M13L 0.03 NULL - - no_errors ALB 213 genome.wustl.edu 36 4 74494978 74494978 + Missense_Mutation SNP C C A novel Unknown TCGA-13-0920-01A-01W-0421-09 TCGA-13-0920-10A-01W-0421-09 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 2e28969b-c9a9-41ec-80bf-f583197b7f92 83a80d56-e463-4096-8c17-a44000f80f66 4 74494978 74494978 C A SNP ALB NM_000477 human genbank 54_36p 1 reviewed missense c.701 p.A234D 1 NULL - - no_errors SCD5 79966 genome.wustl.edu 36 4 83845532 83845532 + Nonsense_Mutation SNP C C T novel Unknown TCGA-13-0920-01A-01W-0421-09 TCGA-13-0920-10A-01W-0421-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 2e28969b-c9a9-41ec-80bf-f583197b7f92 83a80d56-e463-4096-8c17-a44000f80f66 4 83845532 83845532 C T SNP SCD5 NM_001037582 human genbank 54_36p -1 validated nonsense c.291 p.W97* 1 NULL - - no_errors C4orf23 152992 genome.wustl.edu 36 4 8516718 8516718 + Missense_Mutation SNP G G T novel Unknown TCGA-13-0920-01A-01W-0421-09 TCGA-13-0920-10A-01W-0421-09 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 2e28969b-c9a9-41ec-80bf-f583197b7f92 83a80d56-e463-4096-8c17-a44000f80f66 4 8516718 8516718 G T SNP C4orf23 NM_152544 human genbank 54_36p 1 predicted missense c.134 p.R45M 1 NULL - - no_errors PTPN13 5783 genome.wustl.edu 36 4 87949965 87949965 + Missense_Mutation SNP T T C novel Unknown TCGA-13-0920-01A-01W-0421-09 TCGA-13-0920-10A-01W-0421-09 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 2e28969b-c9a9-41ec-80bf-f583197b7f92 83a80d56-e463-4096-8c17-a44000f80f66 4 87949965 87949965 T C SNP PTPN13 NM_080685 human genbank 54_36p 1 reviewed missense c.7118 p.I2373T 0.57 HMMPfam_Y_phosphatase HMMPfam_Y_phosphatase;HMMPfam_Band_41;HMMPfam_PDZ;superfamily_PDZ domain-like;superfamily_PAZ domain;superfamily_Second domain of FERM;superfamily_PH domain-like;superfamily_(Phosphotyrosine protein) phosphatases II;superfamily_Ubiquitin-like - no_errors MATR3 9782 genome.wustl.edu 36 5 138671722 138671722 + Missense_Mutation SNP C C G novel Unknown TCGA-13-0920-01A-01W-0421-09 TCGA-13-0920-10A-01W-0421-09 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 2e28969b-c9a9-41ec-80bf-f583197b7f92 83a80d56-e463-4096-8c17-a44000f80f66 5 138671722 138671722 C G SNP MATR3 NM_018834 human genbank 54_36p 1 reviewed missense c.719 p.S240W 1 NULL superfamily_RNA-binding domain RBD;superfamily_C2H2 and C2HC zinc fingers - no_errors LOC644762 644762 genome.wustl.edu 36 5 149292102 149292102 + RNA SNP T T C novel Unknown TCGA-13-0920-01A-01W-0421-09 TCGA-13-0920-10A-01W-0421-09 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 2e28969b-c9a9-41ec-80bf-f583197b7f92 83a80d56-e463-4096-8c17-a44000f80f66 5 149292102 149292102 T C SNP LOC644762 XR_017570 human genbank 54_36p -1 model rna NULL NULL 1 - - - no_errors ADAM19 8728 genome.wustl.edu 36 5 156851246 156851246 + Missense_Mutation SNP G A A novel Unknown TCGA-13-0920-01A-01W-0421-09 TCGA-13-0920-10A-01W-0421-09 G G A A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 2e28969b-c9a9-41ec-80bf-f583197b7f92 83a80d56-e463-4096-8c17-a44000f80f66 5 156851246 156851246 G A SNP ADAM19 NM_033274 human genbank 54_36p -1 reviewed missense c.2050 p.P684S NULL Reprolysin;HMMPfam_Reprolysin;Disintegrin;HMMPfam_Disintegrin;Pep_M12B_propep;HMMPfam_Pep_M12B_propep;ADAM_CR;HMMPfam_ADAM_CR;EGF_2;HMMPfam_EGF_2 - no_errors RUFY1 80230 genome.wustl.edu 36 5 178953205 178953205 + Missense_Mutation SNP C C G novel Unknown TCGA-13-0920-01A-01W-0421-09 TCGA-13-0920-10A-01W-0421-09 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 2e28969b-c9a9-41ec-80bf-f583197b7f92 83a80d56-e463-4096-8c17-a44000f80f66 5 178953205 178953205 C G SNP RUFY1 NM_025158 human genbank 54_36p 1 validated missense c.1366 p.L456V 1 NULL - - no_errors MT1IP 644314 genome.wustl.edu 36 16 55269031 55269031 + RNA SNP T T C novel Unknown TCGA-13-0920-01A-01W-0421-09 TCGA-13-0920-10A-01W-0421-09 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 2e28969b-c9a9-41ec-80bf-f583197b7f92 83a80d56-e463-4096-8c17-a44000f80f66 16 55269031 55269031 T C SNP MT1IP NR_003669 human genbank 54_36p 1 provisional rna NULL NULL - - - pseudogene LOC644456 644456 genome.wustl.edu 36 2 58542553 58542553 + RNA SNP G G A novel Unknown TCGA-13-0920-01A-01W-0421-09 TCGA-13-0920-10A-01W-0421-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 2e28969b-c9a9-41ec-80bf-f583197b7f92 83a80d56-e463-4096-8c17-a44000f80f66 2 58542553 58542553 G A SNP LOC644456 XR_039438 human genbank 54_36p -1 model rna NULL NULL 0.89 - - - pseudogene MYCT1 80177 genome.wustl.edu 36 6 153084576 153084576 + Missense_Mutation SNP T T A novel Unknown TCGA-13-0920-01A-01W-0421-09 TCGA-13-0920-10A-01W-0421-09 T T T A T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 2e28969b-c9a9-41ec-80bf-f583197b7f92 83a80d56-e463-4096-8c17-a44000f80f66 6 153084576 153084576 T A SNP MYCT1 NM_025107 human genbank 54_36p 1 validated missense c.203 p.L68H 0.5 NULL - - no_errors CDKAL1 54901 genome.wustl.edu 36 6 20954307 20954307 + Missense_Mutation SNP T T A novel Unknown TCGA-13-0920-01A-01W-0421-09 TCGA-13-0920-10A-01W-0421-09 T T T A T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 2e28969b-c9a9-41ec-80bf-f583197b7f92 83a80d56-e463-4096-8c17-a44000f80f66 6 20954307 20954307 T A SNP CDKAL1 NM_017774 human genbank 54_36p 1 validated missense c.661 p.C221S 1 NULL - - no_errors TDP2 51567 genome.wustl.edu 36 6 24774777 24774777 + Missense_Mutation SNP G G T novel Unknown TCGA-13-0920-01A-01W-0421-09 TCGA-13-0920-10A-01W-0421-09 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 2e28969b-c9a9-41ec-80bf-f583197b7f92 83a80d56-e463-4096-8c17-a44000f80f66 6 24774777 24774777 G T SNP TTRAP NM_016614 human genbank 54_36p -1 reviewed missense c.207 p.S69R NULL - - no_errors TRIM39 56658 genome.wustl.edu 36 6 30417764 30417764 + Missense_Mutation SNP G G A novel Unknown TCGA-13-0920-01A-01W-0421-09 TCGA-13-0920-10A-01W-0421-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 2e28969b-c9a9-41ec-80bf-f583197b7f92 83a80d56-e463-4096-8c17-a44000f80f66 6 30417764 30417764 G A SNP TRIM39 NM_021253 human genbank 54_36p 1 reviewed missense c.1306 p.G436R 0.98 NULL - - no_errors ATAT1 79969 genome.wustl.edu 36 6 30718541 30718541 + Missense_Mutation SNP G G C novel Unknown TCGA-13-0920-01A-01W-0421-09 TCGA-13-0920-10A-01W-0421-09 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 2e28969b-c9a9-41ec-80bf-f583197b7f92 83a80d56-e463-4096-8c17-a44000f80f66 6 30718541 30718541 G C SNP C6orf134 NM_024909 human genbank 54_36p 1 validated missense c.742 p.E248Q 1 NULL - - no_errors SLC44A4 80736 genome.wustl.edu 36 6 31946600 31946600 + Missense_Mutation SNP T T C novel Unknown TCGA-13-0920-01A-01W-0421-09 TCGA-13-0920-10A-01W-0421-09 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 2e28969b-c9a9-41ec-80bf-f583197b7f92 83a80d56-e463-4096-8c17-a44000f80f66 6 31946600 31946600 T C SNP SLC44A4 NM_025257 human genbank 54_36p -1 validated missense c.905 p.Y302C 1 NULL - - no_errors PRPH2 5961 genome.wustl.edu 36 6 42780284 42780284 + Missense_Mutation SNP C C T novel Unknown TCGA-13-0920-01A-01W-0421-09 TCGA-13-0920-10A-01W-0421-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 2e28969b-c9a9-41ec-80bf-f583197b7f92 83a80d56-e463-4096-8c17-a44000f80f66 6 42780284 42780284 C T SNP PRPH2 NM_000322 human genbank 54_36p -1 reviewed missense c.625 p.V209I 1 HMMPfam_Tetraspannin HMMPfam_Tetraspannin;superfamily_Tetraspanin - no_errors ABCC10 89845 genome.wustl.edu 36 6 43524900 43524900 + Missense_Mutation SNP G G T novel Unknown TCGA-13-0920-01A-01W-0421-09 TCGA-13-0920-10A-01W-0421-09 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 2e28969b-c9a9-41ec-80bf-f583197b7f92 83a80d56-e463-4096-8c17-a44000f80f66 6 43524900 43524900 G T SNP ABCC10 NM_033450 human genbank 54_36p 1 reviewed missense c.4099 p.A1367S 1 HMMPfam_ABC_tran HMMPfam_ABC_membrane;HMMPfam_ABC_tran;superfamily_P-loop containing nucleoside triphosphate hydrolases;superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain - no_errors SLC35B2 347734 genome.wustl.edu 36 6 44332572 44332572 + Silent SNP C C T novel Unknown TCGA-13-0920-01A-01W-0421-09 TCGA-13-0920-10A-01W-0421-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 2e28969b-c9a9-41ec-80bf-f583197b7f92 83a80d56-e463-4096-8c17-a44000f80f66 6 44332572 44332572 C T SNP SLC35B2 NM_178148 human genbank 54_36p -1 validated silent c.33 p.L11 0.94 NULL - - no_errors TFAP2D 83741 genome.wustl.edu 36 6 50848417 50848417 + Missense_Mutation SNP A A T novel Unknown TCGA-13-0920-01A-01W-0421-09 TCGA-13-0920-10A-01W-0421-09 A A A T A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 2e28969b-c9a9-41ec-80bf-f583197b7f92 83a80d56-e463-4096-8c17-a44000f80f66 6 50848417 50848417 A T SNP TFAP2D NM_172238 human genbank 54_36p 1 validated missense c.1240 p.T414S 0.95 NULL - - no_errors PKHD1 5314 genome.wustl.edu 36 6 51998397 51998397 + Silent SNP C C A novel Unknown TCGA-13-0920-01A-01W-0421-09 TCGA-13-0920-10A-01W-0421-09 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 2e28969b-c9a9-41ec-80bf-f583197b7f92 83a80d56-e463-4096-8c17-a44000f80f66 6 51998397 51998397 C A SNP PKHD1 NM_138694 human genbank 54_36p -1 reviewed silent c.4170 p.R1390 0.27 HMMPfam_TIG HMMPfam_TIG;superfamily_Pectin lyase-like;superfamily_E set domains;superfamily_Anthrax protective antigen - no_errors SERPINE1 5054 genome.wustl.edu 36 7 100560506 100560506 + Missense_Mutation SNP C C T novel Unknown TCGA-13-0920-01A-01W-0421-09 TCGA-13-0920-10A-01W-0421-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 2e28969b-c9a9-41ec-80bf-f583197b7f92 83a80d56-e463-4096-8c17-a44000f80f66 7 100560506 100560506 C T SNP SERPINE1 NM_000602 human genbank 54_36p 1 validated missense c.356 p.A119V 1 HMMPfam_Serpin HMMPfam_Serpin;superfamily_Serpins - no_errors ARMC10 83787 genome.wustl.edu 36 7 102526015 102526015 + Missense_Mutation SNP C C T novel Unknown TCGA-13-0920-01A-01W-0421-09 TCGA-13-0920-10A-01W-0421-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 2e28969b-c9a9-41ec-80bf-f583197b7f92 83a80d56-e463-4096-8c17-a44000f80f66 7 102526015 102526015 C T SNP ARMC10 NM_031905 human genbank 54_36p 1 provisional missense c.811 p.H271Y 0.01 NULL - - no_errors EXOC4 60412 genome.wustl.edu 36 7 132588414 132588414 + Missense_Mutation SNP C C A novel Unknown TCGA-13-0920-01A-01W-0421-09 TCGA-13-0920-10A-01W-0421-09 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 2e28969b-c9a9-41ec-80bf-f583197b7f92 83a80d56-e463-4096-8c17-a44000f80f66 7 132588414 132588414 C A SNP EXOC4 NM_021807 human genbank 54_36p 1 reviewed missense c.17 p.A6D 1 HMMPfam_Sec8_exocyst HMMPfam_Sec8_exocyst - no_errors PRSS2 5645 genome.wustl.edu 36 7 142180011 142180011 + Missense_Mutation SNP C C G novel Unknown TCGA-13-0920-01A-01W-0421-09 TCGA-13-0920-10A-01W-0421-09 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 2e28969b-c9a9-41ec-80bf-f583197b7f92 83a80d56-e463-4096-8c17-a44000f80f66 7 142180011 142180011 C G SNP PRSS2 NM_002770 human genbank 54_36p 1 reviewed missense c.200 p.S67C 0.99 NULL - - no_errors PRPS1L1 221823 genome.wustl.edu 36 7 18033759 18033759 + Missense_Mutation SNP T T C novel Unknown TCGA-13-0920-01A-01W-0421-09 TCGA-13-0920-10A-01W-0421-09 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 2e28969b-c9a9-41ec-80bf-f583197b7f92 83a80d56-e463-4096-8c17-a44000f80f66 7 18033759 18033759 T C SNP PRPS1L1 NM_175886 human genbank 54_36p -1 reviewed missense c.172 p.S58G 1 NULL HMMPfam_Pribosyltran;superfamily_PRTase-like - no_start_codon NFE2L3 9603 genome.wustl.edu 36 7 26190738 26190738 + Missense_Mutation SNP G G T novel Unknown TCGA-13-0920-01A-01W-0421-09 TCGA-13-0920-10A-01W-0421-09 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 2e28969b-c9a9-41ec-80bf-f583197b7f92 83a80d56-e463-4096-8c17-a44000f80f66 7 26190738 26190738 G T SNP NFE2L3 NM_004289 human genbank 54_36p 1 reviewed missense c.895 p.A299S 0.01 NULL superfamily_A DNA-binding domain in eukaryotic transcription factors;HMMPfam_bZIP_1 - no_errors ABCA13 154664 genome.wustl.edu 36 7 48284358 48284358 + Missense_Mutation SNP T T A novel Unknown TCGA-13-0920-01A-01W-0421-09 TCGA-13-0920-10A-01W-0421-09 T T T A T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 2e28969b-c9a9-41ec-80bf-f583197b7f92 83a80d56-e463-4096-8c17-a44000f80f66 7 48284358 48284358 T A SNP ABCA13 NM_152701 human genbank 54_36p 1 reviewed missense c.4386 p.S1462R 0.009 NULL - - no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region RNF216 54476 genome.wustl.edu 36 7 5747471 5747471 + Missense_Mutation SNP A A C novel Unknown TCGA-13-0920-01A-01W-0421-09 TCGA-13-0920-10A-01W-0421-09 A A A C A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 2e28969b-c9a9-41ec-80bf-f583197b7f92 83a80d56-e463-4096-8c17-a44000f80f66 7 5747471 5747471 A C SNP RNF216 NM_207111 human genbank 54_36p -1 reviewed missense c.703 p.F235V 0.95 NULL - - no_errors ZKSCAN1 7586 genome.wustl.edu 36 7 99465904 99465904 + Missense_Mutation SNP C C G novel Unknown TCGA-13-0920-01A-01W-0421-09 TCGA-13-0920-10A-01W-0421-09 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 2e28969b-c9a9-41ec-80bf-f583197b7f92 83a80d56-e463-4096-8c17-a44000f80f66 7 99465904 99465904 C G SNP ZKSCAN1 NM_003439 human genbank 54_36p 1 validated missense c.769 p.Q257E 1 NULL - - no_errors NOV 4856 genome.wustl.edu 36 8 120504343 120504343 + Missense_Mutation SNP G G C novel Unknown TCGA-13-0920-01A-01W-0421-09 TCGA-13-0920-10A-01W-0421-09 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 2e28969b-c9a9-41ec-80bf-f583197b7f92 83a80d56-e463-4096-8c17-a44000f80f66 8 120504343 120504343 G C SNP NOV NM_002514 human genbank 54_36p 1 reviewed missense c.864 p.K288N 1 HMMPfam_Cys_knot HMMPfam_IGFBP;HMMPfam_TSP_1;HMMPfam_VWC;HMMPfam_Cys_knot;superfamily_TSP-1 type 1 repeat - no_errors CHRNA2 1135 genome.wustl.edu 36 8 27383308 27383308 + Missense_Mutation SNP G G A novel Unknown TCGA-13-0920-01A-01W-0421-09 TCGA-13-0920-10A-01W-0421-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 2e28969b-c9a9-41ec-80bf-f583197b7f92 83a80d56-e463-4096-8c17-a44000f80f66 8 27383308 27383308 G A SNP CHRNA2 NM_000742 human genbank 54_36p -1 validated missense c.181 p.R61W 0.98 HMMPfam_Neur_chan_LBD HMMPfam_Neur_chan_memb;HMMPfam_Neur_chan_LBD;superfamily_Nicotinic receptor ligand binding domain-like;superfamily_Neurotransmitter-gated ion-channel transmembrane pore - no_errors TEX15 56154 genome.wustl.edu 36 8 30821929 30821929 + Missense_Mutation SNP G G A Unknown TCGA-13-0920-01A-01W-0421-09 TCGA-13-0920-10A-01W-0421-09 G G G A G G Unknown Valid Somatic Phase_III Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 2e28969b-c9a9-41ec-80bf-f583197b7f92 83a80d56-e463-4096-8c17-a44000f80f66 8 30821929 30821929 G A SNP TEX15 NM_031271 human genbank 54_36p -1 validated missense c.4147 p.L1383F 0 NULL - - no_errors CSPP1 79848 genome.wustl.edu 36 8 68170433 68170433 + Missense_Mutation SNP G G T novel Unknown TCGA-13-0920-01A-01W-0421-09 TCGA-13-0920-10A-01W-0421-09 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 2e28969b-c9a9-41ec-80bf-f583197b7f92 83a80d56-e463-4096-8c17-a44000f80f66 8 68170433 68170433 G T SNP CSPP1 NM_001077204 human genbank 54_36p 1 validated missense c.967 p.D323Y 0.31 NULL - - no_errors C8orf34 116328 genome.wustl.edu 36 8 69514291 69514291 + Silent SNP T T C novel Unknown TCGA-13-0920-01A-01W-0421-09 TCGA-13-0920-10A-01W-0421-09 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 2e28969b-c9a9-41ec-80bf-f583197b7f92 83a80d56-e463-4096-8c17-a44000f80f66 8 69514291 69514291 T C SNP C8orf34 ENST00000349492 human ensembl 54_36p 1 known silent c.331 p.L111 1 NULL - - no_errors LOC100132402 100132402 genome.wustl.edu 36 10 81642848 81642848 + RNA SNP G G A novel Unknown TCGA-13-0920-01A-01W-0421-09 TCGA-13-0920-10A-01W-0421-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 2e28969b-c9a9-41ec-80bf-f583197b7f92 83a80d56-e463-4096-8c17-a44000f80f66 10 81642848 81642848 G A SNP LOC100132402 XR_037723 human genbank 54_36p -1 model rna NULL NULL 0.82 - - - pseudogene SPTAN1 6709 genome.wustl.edu 36 9 130389791 130389791 + Frame_Shift_Del DEL C C - Unknown TCGA-13-0920-01A-01W-0421-09 TCGA-13-0920-10A-01W-0421-09 C C C - C C Unknown Valid Somatic Phase_III Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 2e28969b-c9a9-41ec-80bf-f583197b7f92 83a80d56-e463-4096-8c17-a44000f80f66 9 130389791 130389791 C - DEL SPTAN1 NM_003127 human genbank 54_36p 1 validated frame_shift_del c.2864 p.C956fs 0.995 HMMPfam_Spectrin HMMPfam_SH3_1,superfamily_SH3-domain,HMMPfam_Spectrin,HMMPfam_efhand,HMMPfam_efhand_Ca_insen,superfamily_Spectrin repeat,superfamily_EF-hand (deletion:cds_exon[130389706,130389798]) no_errors BNC2 54796 genome.wustl.edu 36 9 16427047 16427047 + Missense_Mutation SNP G G C novel Unknown TCGA-13-0920-01A-01W-0421-09 TCGA-13-0920-10A-01W-0421-09 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 2e28969b-c9a9-41ec-80bf-f583197b7f92 83a80d56-e463-4096-8c17-a44000f80f66 9 16427047 16427047 G C SNP BNC2 NM_017637 human genbank 54_36p -1 validated missense c.1145 p.P382R 1 NULL HMMPfam_zf-C2H2;superfamily_C2H2 and C2HC zinc fingers - no_errors UBAP2 55833 genome.wustl.edu 36 9 33943309 33943309 + Missense_Mutation SNP C C T novel Unknown TCGA-13-0920-01A-01W-0421-09 TCGA-13-0920-10A-01W-0421-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 2e28969b-c9a9-41ec-80bf-f583197b7f92 83a80d56-e463-4096-8c17-a44000f80f66 9 33943309 33943309 C T SNP UBAP2 NM_018449 human genbank 54_36p -1 reviewed missense c.1030 p.V344I 0.997 NULL HMMPfam_UBA,superfamily_UBA-like - no_errors HTR2C 3358 genome.wustl.edu 36 X 113872086 113872086 + Missense_Mutation SNP T T A novel Unknown TCGA-13-0920-01A-01W-0421-09 TCGA-13-0920-10A-01W-0421-09 T T Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 2e28969b-c9a9-41ec-80bf-f583197b7f92 83a80d56-e463-4096-8c17-a44000f80f66 X 113872086 113872086 T A SNP HTR2C NM_000868 human genbank 54_36p 1 reviewed missense c.163 p.W55R 1 NULL HMMPfam_7tm_1;superfamily_Family A G protein-coupled receptor-like - no_errors LUZP4 51213 genome.wustl.edu 36 X 114444178 114444178 + Missense_Mutation SNP A A T Unknown TCGA-13-0920-01A-01W-0421-09 TCGA-13-0920-10A-01W-0421-09 A A A T A A Unknown Valid Somatic Phase_III Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 2e28969b-c9a9-41ec-80bf-f583197b7f92 83a80d56-e463-4096-8c17-a44000f80f66 X 114444178 114444178 A T SNP LUZP4 NM_016383 human genbank 54_36p 1 validated missense c.281 p.Q94L 0.006 NULL - - no_errors PASD1 139135 genome.wustl.edu 36 X 150593173 150593173 + Silent SNP A A T novel Unknown TCGA-13-0920-01A-01W-0421-09 TCGA-13-0920-10A-01W-0421-09 A A A T A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 2e28969b-c9a9-41ec-80bf-f583197b7f92 83a80d56-e463-4096-8c17-a44000f80f66 X 150593173 150593173 A T SNP PASD1 NM_173493 human genbank 54_36p 1 validated silent c.2034 p.S678 NULL superfamily_PYP-like sensor domain (PAS domain) - no_errors BEND2 139105 genome.wustl.edu 36 X 18144655 18144655 + Missense_Mutation SNP C C T novel Unknown TCGA-13-0920-01A-01W-0421-09 TCGA-13-0920-10A-01W-0421-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 2e28969b-c9a9-41ec-80bf-f583197b7f92 83a80d56-e463-4096-8c17-a44000f80f66 X 18144655 18144655 C T SNP BEND2 NM_153346 human genbank 54_36p -1 validated missense c.145 p.V49I NULL - - no_errors DCAF8L1 139425 genome.wustl.edu 36 X 27908187 27908187 + Missense_Mutation SNP C C T novel Unknown TCGA-13-0920-01A-01W-0421-09 TCGA-13-0920-10A-01W-0421-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 2e28969b-c9a9-41ec-80bf-f583197b7f92 83a80d56-e463-4096-8c17-a44000f80f66 X 27908187 27908187 C T SNP WDR42B NM_001017930 human genbank 54_36p -1 provisional missense c.1186 p.V396I 1 NULL - - no_errors LOC100130233 100130233 genome.wustl.edu 36 X 32134152 32134152 + RNA SNP G G T novel Unknown TCGA-13-0920-01A-01W-0421-09 TCGA-13-0920-10A-01W-0421-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 2e28969b-c9a9-41ec-80bf-f583197b7f92 83a80d56-e463-4096-8c17-a44000f80f66 X 32134152 32134152 G T SNP LOC100130233 XR_038856 human genbank 54_36p 1 model rna NULL NULL 1 - - - pseudogene ZNF711 7552 genome.wustl.edu 36 X 84412933 84412933 + Missense_Mutation SNP C C A novel Unknown TCGA-13-0920-01A-01W-0421-09 TCGA-13-0920-10A-01W-0421-09 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 2e28969b-c9a9-41ec-80bf-f583197b7f92 83a80d56-e463-4096-8c17-a44000f80f66 X 84412933 84412933 C A SNP ZNF711 NM_021998 human genbank 54_36p 1 reviewed missense c.1729 p.L577I 1 HMMPfam_zf-C2H2 HMMPfam_Zfx_Zfy_act;HMMPfam_zf-C2H2;superfamily_C2H2 and C2HC zinc fingers - no_errors SYTL4 94121 genome.wustl.edu 36 X 99828803 99828803 + Missense_Mutation SNP C C G novel Unknown TCGA-13-0920-01A-01W-0421-09 TCGA-13-0920-10A-01W-0421-09 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 2e28969b-c9a9-41ec-80bf-f583197b7f92 83a80d56-e463-4096-8c17-a44000f80f66 X 99828803 99828803 C G SNP SYTL4 NM_080737 human genbank 54_36p -1 validated missense c.1101 p.E367D 0.12 NULL - - no_errors