Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID DNAJC11 55735 broad.mit.edu 36 1 6619976 6619976 + Missense_Mutation SNP C C T novel none TCGA-13-1409-01A-01W-0492-08 TCGA-13-1409-10A-01W-0493-08 C C T T C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 190a2803-8e25-4b87-8f7b-192e8923965e 97d5fc6e-f5d2-4581-ac75-809d6492016c ALPL 249 broad.mit.edu 36 1 21762289 21762289 + Missense_Mutation SNP G G A novel none TCGA-13-1409-01A-01W-0492-08 TCGA-13-1409-10A-01W-0493-08 G G A A G G Unknown Valid Somatic Phase_I Capture Capture;Sequenom Illumina GAIIx 190a2803-8e25-4b87-8f7b-192e8923965e 97d5fc6e-f5d2-4581-ac75-809d6492016c FAM183A 440585 broad.mit.edu 36 1 43394541 43394541 + Silent SNP G G A novel none TCGA-13-1409-01A-01W-0492-08 TCGA-13-1409-10A-01W-0493-08 G G A A G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 190a2803-8e25-4b87-8f7b-192e8923965e 97d5fc6e-f5d2-4581-ac75-809d6492016c RCOR3 55758 broad.mit.edu 36 1 209552736 209552736 + Missense_Mutation SNP A A G novel none TCGA-13-1409-01A-01W-0492-08 TCGA-13-1409-10A-01W-0493-08 A A G G A A Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 190a2803-8e25-4b87-8f7b-192e8923965e 97d5fc6e-f5d2-4581-ac75-809d6492016c USH2A 7399 broad.mit.edu 36 1 213874577 213874577 + Silent SNP C C T novel none TCGA-13-1409-01A-01W-0492-08 TCGA-13-1409-10A-01W-0493-08 C C T T C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 190a2803-8e25-4b87-8f7b-192e8923965e 97d5fc6e-f5d2-4581-ac75-809d6492016c MYO3A 53904 broad.mit.edu 36 10 26355327 26355327 + Missense_Mutation SNP T T G novel none TCGA-13-1409-01A-01W-0492-08 TCGA-13-1409-10A-01W-0493-08 T T G G T T Unknown Valid Somatic Phase_I Capture Sequenom;Capture Illumina GAIIx 190a2803-8e25-4b87-8f7b-192e8923965e 97d5fc6e-f5d2-4581-ac75-809d6492016c UNC5B 219699 broad.mit.edu 36 10 72716536 72716536 + Missense_Mutation SNP C C T novel none TCGA-13-1409-01A-01W-0492-08 TCGA-13-1409-10A-01W-0493-08 C C T T C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 190a2803-8e25-4b87-8f7b-192e8923965e 97d5fc6e-f5d2-4581-ac75-809d6492016c HABP2 3026 broad.mit.edu 36 10 115327852 115327852 + Missense_Mutation SNP T T G novel none TCGA-13-1409-01A-01W-0492-08 TCGA-13-1409-10A-01W-0493-08 T T G G T T Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 190a2803-8e25-4b87-8f7b-192e8923965e 97d5fc6e-f5d2-4581-ac75-809d6492016c OR51Q1 390061 broad.mit.edu 36 11 5400269 5400269 + Missense_Mutation SNP G G T novel none TCGA-13-1409-01A-01W-0492-08 TCGA-13-1409-10A-01W-0493-08 G G T T G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 190a2803-8e25-4b87-8f7b-192e8923965e 97d5fc6e-f5d2-4581-ac75-809d6492016c FSHB 2488 broad.mit.edu 36 11 30210097 30210097 + Silent SNP C C A novel none TCGA-13-1409-01A-01W-0492-08 TCGA-13-1409-10A-01W-0493-08 C C A A C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 190a2803-8e25-4b87-8f7b-192e8923965e 97d5fc6e-f5d2-4581-ac75-809d6492016c QSER1 79832 broad.mit.edu 36 11 32912214 32912214 + Missense_Mutation SNP G G A novel none TCGA-13-1409-01A-01W-0492-08 TCGA-13-1409-10A-01W-0493-08 G G A A G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 190a2803-8e25-4b87-8f7b-192e8923965e 97d5fc6e-f5d2-4581-ac75-809d6492016c OR8K1 390157 broad.mit.edu 36 11 55870397 55870397 + Missense_Mutation SNP T T C novel none TCGA-13-1409-01A-01W-0492-08 TCGA-13-1409-10A-01W-0493-08 T T C C T T Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 190a2803-8e25-4b87-8f7b-192e8923965e 97d5fc6e-f5d2-4581-ac75-809d6492016c DPF2 5977 broad.mit.edu 36 11 64865046 64865046 + Missense_Mutation SNP C C A novel none TCGA-13-1409-01A-01W-0492-08 TCGA-13-1409-10A-01W-0493-08 C C A A C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 190a2803-8e25-4b87-8f7b-192e8923965e 97d5fc6e-f5d2-4581-ac75-809d6492016c PUS3 83480 broad.mit.edu 36 11 125270366 125270366 + Missense_Mutation SNP G G T novel none TCGA-13-1409-01A-01W-0492-08 TCGA-13-1409-10A-01W-0493-08 G G T T G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 190a2803-8e25-4b87-8f7b-192e8923965e 97d5fc6e-f5d2-4581-ac75-809d6492016c CCNT1 904 broad.mit.edu 36 12 47374193 47374193 + Silent SNP A A C novel none TCGA-13-1409-01A-01W-0492-08 TCGA-13-1409-10A-01W-0493-08 A A C C A A Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 190a2803-8e25-4b87-8f7b-192e8923965e 97d5fc6e-f5d2-4581-ac75-809d6492016c DIP2B 57609 broad.mit.edu 36 12 49378405 49378405 + Silent SNP A A G novel none TCGA-13-1409-01A-01W-0492-08 TCGA-13-1409-10A-01W-0493-08 A A G G A A Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 190a2803-8e25-4b87-8f7b-192e8923965e 97d5fc6e-f5d2-4581-ac75-809d6492016c FRY 10129 broad.mit.edu 36 13 31550987 31550987 + Silent SNP C C T novel none TCGA-13-1409-01A-01W-0492-08 TCGA-13-1409-10A-01W-0493-08 C C T T C C Unknown Valid Somatic Phase_I Capture Sequenom;Capture;Sequenom Illumina GAIIx 190a2803-8e25-4b87-8f7b-192e8923965e 97d5fc6e-f5d2-4581-ac75-809d6492016c C14orf43 91748 broad.mit.edu 36 14 73276041 73276041 + Missense_Mutation SNP A A C novel none TCGA-13-1409-01A-01W-0492-08 TCGA-13-1409-10A-01W-0493-08 A A C C A A Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 190a2803-8e25-4b87-8f7b-192e8923965e 97d5fc6e-f5d2-4581-ac75-809d6492016c NTRK3 4916 broad.mit.edu 36 15 86284908 86284908 + Nonsense_Mutation SNP C C A novel none TCGA-13-1409-01A-01W-0492-08 TCGA-13-1409-10A-01W-0493-08 C C A A C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 190a2803-8e25-4b87-8f7b-192e8923965e 97d5fc6e-f5d2-4581-ac75-809d6492016c CDH8 1006 broad.mit.edu 36 16 60245476 60245476 + Missense_Mutation SNP C C T novel none TCGA-13-1409-01A-01W-0492-08 TCGA-13-1409-10A-01W-0493-08 C C T T C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 190a2803-8e25-4b87-8f7b-192e8923965e 97d5fc6e-f5d2-4581-ac75-809d6492016c ZFHX3 463 broad.mit.edu 36 16 71380038 71380038 + Missense_Mutation SNP G G T novel none TCGA-13-1409-01A-01W-0492-08 TCGA-13-1409-10A-01W-0493-08 G G T T G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 190a2803-8e25-4b87-8f7b-192e8923965e 97d5fc6e-f5d2-4581-ac75-809d6492016c ANKRD11 29123 broad.mit.edu 36 16 87879044 87879044 + Silent SNP G G A novel none TCGA-13-1409-01A-01W-0492-08 TCGA-13-1409-10A-01W-0493-08 G G A A G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 190a2803-8e25-4b87-8f7b-192e8923965e 97d5fc6e-f5d2-4581-ac75-809d6492016c TP53 7157 broad.mit.edu 36 17 7518223 7518223 + Splice_Site SNP C C A novel none TCGA-13-1409-01A-01W-0492-08 TCGA-13-1409-10A-01W-0493-08 C C A A C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA;Capture Illumina GAIIx 190a2803-8e25-4b87-8f7b-192e8923965e 97d5fc6e-f5d2-4581-ac75-809d6492016c ZNF257 113835 broad.mit.edu 36 19 22062936 22062936 + Missense_Mutation SNP T T C novel none TCGA-13-1409-01A-01W-0492-08 TCGA-13-1409-10A-01W-0493-08 T T C C T T Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 190a2803-8e25-4b87-8f7b-192e8923965e 97d5fc6e-f5d2-4581-ac75-809d6492016c FAM83E 54854 broad.mit.edu 36 19 53808235 53808235 + Silent SNP C C T novel none TCGA-13-1409-01A-01W-0492-08 TCGA-13-1409-10A-01W-0493-08 C C T T C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 190a2803-8e25-4b87-8f7b-192e8923965e 97d5fc6e-f5d2-4581-ac75-809d6492016c ZSWIM2 151112 broad.mit.edu 36 2 187421961 187421961 + Nonsense_Mutation SNP C C A novel none TCGA-13-1409-01A-01W-0492-08 TCGA-13-1409-10A-01W-0493-08 C C A A C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 190a2803-8e25-4b87-8f7b-192e8923965e 97d5fc6e-f5d2-4581-ac75-809d6492016c COL4A3 1285 broad.mit.edu 36 2 227855409 227855409 + Missense_Mutation SNP C C T novel none TCGA-13-1409-01A-01W-0492-08 TCGA-13-1409-10A-01W-0493-08 C C T T C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 190a2803-8e25-4b87-8f7b-192e8923965e 97d5fc6e-f5d2-4581-ac75-809d6492016c SP100 6672 broad.mit.edu 36 2 231017272 231017272 + Missense_Mutation SNP G G A novel none TCGA-13-1409-01A-01W-0492-08 TCGA-13-1409-10A-01W-0493-08 G G A A G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 190a2803-8e25-4b87-8f7b-192e8923965e 97d5fc6e-f5d2-4581-ac75-809d6492016c KIF16B 55614 broad.mit.edu 36 20 16444271 16444271 + Silent SNP T T A novel none TCGA-13-1409-01A-01W-0492-08 TCGA-13-1409-10A-01W-0493-08 T T A A T T Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 190a2803-8e25-4b87-8f7b-192e8923965e 97d5fc6e-f5d2-4581-ac75-809d6492016c PLXNB2 23654 broad.mit.edu 36 22 49066380 49066380 + Silent SNP C C T novel none TCGA-13-1409-01A-01W-0492-08 TCGA-13-1409-10A-01W-0493-08 C C T T C C Unknown Valid Somatic Phase_I Capture Sequenom Illumina GAIIx 190a2803-8e25-4b87-8f7b-192e8923965e 97d5fc6e-f5d2-4581-ac75-809d6492016c PLXNB2 23654 broad.mit.edu 36 22 49066760 49066760 + Missense_Mutation SNP G G T novel none TCGA-13-1409-01A-01W-0492-08 TCGA-13-1409-10A-01W-0493-08 G G T T G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 190a2803-8e25-4b87-8f7b-192e8923965e 97d5fc6e-f5d2-4581-ac75-809d6492016c BSN 8927 broad.mit.edu 36 3 49655338 49655338 + Nonsense_Mutation SNP G G T novel none TCGA-13-1409-01A-01W-0492-08 TCGA-13-1409-10A-01W-0493-08 G G T T G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 190a2803-8e25-4b87-8f7b-192e8923965e 97d5fc6e-f5d2-4581-ac75-809d6492016c MON1A 84315 broad.mit.edu 36 3 49922959 49922959 + Missense_Mutation SNP G G A novel none TCGA-13-1409-01A-01W-0492-08 TCGA-13-1409-10A-01W-0493-08 G G A A G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 190a2803-8e25-4b87-8f7b-192e8923965e 97d5fc6e-f5d2-4581-ac75-809d6492016c ROPN1 54763 broad.mit.edu 36 3 125178457 125178457 + Missense_Mutation SNP C C A novel none TCGA-13-1409-01A-01W-0492-08 TCGA-13-1409-10A-01W-0493-08 C C A A C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 190a2803-8e25-4b87-8f7b-192e8923965e 97d5fc6e-f5d2-4581-ac75-809d6492016c EIF2B5 8893 broad.mit.edu 36 3 185343300 185343300 + Missense_Mutation SNP G G C novel none TCGA-13-1409-01A-01W-0492-08 TCGA-13-1409-10A-01W-0493-08 G G C C G G Unknown Valid Somatic Phase_I Capture Sequenom;Capture Illumina GAIIx 190a2803-8e25-4b87-8f7b-192e8923965e 97d5fc6e-f5d2-4581-ac75-809d6492016c ADH5 128 broad.mit.edu 36 4 100212611 100212611 + Nonsense_Mutation SNP G G A novel none TCGA-13-1409-01A-01W-0492-08 TCGA-13-1409-10A-01W-0493-08 G G A A G G Unknown Valid Somatic Phase_I Capture Sequenom;Capture Illumina GAIIx 190a2803-8e25-4b87-8f7b-192e8923965e 97d5fc6e-f5d2-4581-ac75-809d6492016c CXXC4 80319 broad.mit.edu 36 4 105631754 105631754 + Missense_Mutation SNP A A G novel none TCGA-13-1409-01A-01W-0492-08 TCGA-13-1409-10A-01W-0493-08 A A G G A A Unknown Valid Somatic Phase_I Capture Sequenom;Capture;Sequenom Illumina GAIIx 190a2803-8e25-4b87-8f7b-192e8923965e 97d5fc6e-f5d2-4581-ac75-809d6492016c CDH6 1004 broad.mit.edu 36 5 31335411 31335411 + Missense_Mutation SNP G G A novel none TCGA-13-1409-01A-01W-0492-08 TCGA-13-1409-10A-01W-0493-08 G G A A G G Unknown Valid Somatic Phase_I Capture Sequenom;Capture;Sequenom Illumina GAIIx 190a2803-8e25-4b87-8f7b-192e8923965e 97d5fc6e-f5d2-4581-ac75-809d6492016c PRLR 5618 broad.mit.edu 36 5 35106079 35106079 + Missense_Mutation SNP G G A novel none TCGA-13-1409-01A-01W-0492-08 TCGA-13-1409-10A-01W-0493-08 G G A A G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 190a2803-8e25-4b87-8f7b-192e8923965e 97d5fc6e-f5d2-4581-ac75-809d6492016c SPZ1 84654 broad.mit.edu 36 5 79652841 79652841 + Missense_Mutation SNP G G C novel none TCGA-13-1409-01A-01W-0492-08 TCGA-13-1409-10A-01W-0493-08 G G C C G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 190a2803-8e25-4b87-8f7b-192e8923965e 97d5fc6e-f5d2-4581-ac75-809d6492016c GEMIN5 25929 broad.mit.edu 36 5 154259047 154259047 + Missense_Mutation SNP C C G novel none TCGA-13-1409-01A-01W-0492-08 TCGA-13-1409-10A-01W-0493-08 C C G G C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 190a2803-8e25-4b87-8f7b-192e8923965e 97d5fc6e-f5d2-4581-ac75-809d6492016c RNF145 153830 broad.mit.edu 36 5 158520861 158520861 + Silent SNP G G A novel none TCGA-13-1409-01A-01W-0492-08 TCGA-13-1409-10A-01W-0493-08 G G A A G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 190a2803-8e25-4b87-8f7b-192e8923965e 97d5fc6e-f5d2-4581-ac75-809d6492016c PGBD1 84547 broad.mit.edu 36 6 28372645 28372645 + Missense_Mutation SNP G G A novel none TCGA-13-1409-01A-01W-0492-08 TCGA-13-1409-10A-01W-0493-08 G G A A G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 190a2803-8e25-4b87-8f7b-192e8923965e 97d5fc6e-f5d2-4581-ac75-809d6492016c DDO 8528 broad.mit.edu 36 6 110836235 110836235 + Silent SNP T T C novel none TCGA-13-1409-01A-01W-0492-08 TCGA-13-1409-10A-01W-0493-08 T T C C T T Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 190a2803-8e25-4b87-8f7b-192e8923965e 97d5fc6e-f5d2-4581-ac75-809d6492016c PPP1R3A 5506 broad.mit.edu 36 7 113305739 113305739 + Missense_Mutation SNP G G T novel none TCGA-13-1409-01A-01W-0492-08 TCGA-13-1409-10A-01W-0493-08 G G T T G G Unknown Valid Somatic Phase_I Capture Sequenom;Capture Illumina GAIIx 190a2803-8e25-4b87-8f7b-192e8923965e 97d5fc6e-f5d2-4581-ac75-809d6492016c ANK1 286 broad.mit.edu 36 8 41734807 41734807 + Missense_Mutation SNP A A T novel none TCGA-13-1409-01A-01W-0492-08 TCGA-13-1409-10A-01W-0493-08 A A T T A A Unknown Valid Somatic Phase_I Capture Sequenom;Capture Illumina GAIIx 190a2803-8e25-4b87-8f7b-192e8923965e 97d5fc6e-f5d2-4581-ac75-809d6492016c CSMD3 114788 broad.mit.edu 36 8 113461831 113461831 + Missense_Mutation SNP G G T novel none TCGA-13-1409-01A-01W-0492-08 TCGA-13-1409-10A-01W-0493-08 G G T T G G Unknown Valid Somatic Phase_I Capture Sequenom;Capture Illumina GAIIx 190a2803-8e25-4b87-8f7b-192e8923965e 97d5fc6e-f5d2-4581-ac75-809d6492016c GPKOW 27238 broad.mit.edu 36 X 48863011 48863011 + Missense_Mutation SNP G G T novel none TCGA-13-1409-01A-01W-0492-08 TCGA-13-1409-10A-01W-0493-08 G G T T G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 190a2803-8e25-4b87-8f7b-192e8923965e 97d5fc6e-f5d2-4581-ac75-809d6492016c BRCC3 79184 broad.mit.edu 36 X 153953096 153953096 + Missense_Mutation SNP G G A novel none TCGA-13-1409-01A-01W-0492-08 TCGA-13-1409-10A-01W-0493-08 G G A A G G Unknown Valid Somatic Phase_I Capture Sequenom;Capture;Sequenom Illumina GAIIx 190a2803-8e25-4b87-8f7b-192e8923965e 97d5fc6e-f5d2-4581-ac75-809d6492016c