Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID CROCC 9696 broad.mit.edu 36 1 17123477 17123477 + Missense_Mutation SNP G G C novel none TCGA-13-1505-01A-01D-0472-08 TCGA-13-1505-10A-01D-0472-08 G G C C G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx ada62fb4-7589-417b-b03a-795a2e9d4028 e4033772-e098-4afd-88a9-a85871498cbe CR1 1378 broad.mit.edu 36 1 205856626 205856626 + Missense_Mutation SNP A A G rs55770942 unknown TCGA-13-1505-01A-01D-0472-08 TCGA-13-1505-10A-01D-0472-08 A A G G A A Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx ada62fb4-7589-417b-b03a-795a2e9d4028 e4033772-e098-4afd-88a9-a85871498cbe EIF4G2 1982 broad.mit.edu 36 11 10777791 10777791 + Missense_Mutation SNP T T G novel none TCGA-13-1505-01A-01D-0472-08 TCGA-13-1505-10A-01D-0472-08 T T G G T T Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx ada62fb4-7589-417b-b03a-795a2e9d4028 e4033772-e098-4afd-88a9-a85871498cbe CD82 3732 broad.mit.edu 36 11 44583231 44583231 + Missense_Mutation SNP G G A novel none TCGA-13-1505-01A-01D-0472-08 TCGA-13-1505-10A-01D-0472-08 G G A A G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx ada62fb4-7589-417b-b03a-795a2e9d4028 e4033772-e098-4afd-88a9-a85871498cbe OR5D13 390142 broad.mit.edu 36 11 55297497 55297497 + Missense_Mutation SNP C C A novel none TCGA-13-1505-01A-01D-0472-08 TCGA-13-1505-10A-01D-0472-08 C C A A C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx ada62fb4-7589-417b-b03a-795a2e9d4028 e4033772-e098-4afd-88a9-a85871498cbe OR5M11 219487 broad.mit.edu 36 11 56067065 56067065 + Missense_Mutation SNP G G A novel none TCGA-13-1505-01A-01D-0472-08 TCGA-13-1505-10A-01D-0472-08 G G A A G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx ada62fb4-7589-417b-b03a-795a2e9d4028 e4033772-e098-4afd-88a9-a85871498cbe SFRS2B 10929 broad.mit.edu 36 11 94440692 94440692 + Silent SNP C C T novel none TCGA-13-1505-01A-01D-0472-08 TCGA-13-1505-10A-01D-0472-08 C C T T C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx ada62fb4-7589-417b-b03a-795a2e9d4028 e4033772-e098-4afd-88a9-a85871498cbe CEP164 22897 broad.mit.edu 36 11 116788066 116788066 + Missense_Mutation SNP A A C novel none TCGA-13-1505-01A-01D-0472-08 TCGA-13-1505-10A-01D-0472-08 A A C C A A Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx ada62fb4-7589-417b-b03a-795a2e9d4028 e4033772-e098-4afd-88a9-a85871498cbe EI24 9538 broad.mit.edu 36 11 124952674 124952674 + Missense_Mutation SNP T T C novel none TCGA-13-1505-01A-01D-0472-08 TCGA-13-1505-10A-01D-0472-08 T T C C T T Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx ada62fb4-7589-417b-b03a-795a2e9d4028 e4033772-e098-4afd-88a9-a85871498cbe FAM90A1 55138 broad.mit.edu 36 12 8268675 8268675 + Silent SNP G G C novel none TCGA-13-1505-01A-01D-0472-08 TCGA-13-1505-10A-01D-0472-08 G G C C G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx ada62fb4-7589-417b-b03a-795a2e9d4028 e4033772-e098-4afd-88a9-a85871498cbe TPH2 121278 broad.mit.edu 36 12 70674491 70674491 + Missense_Mutation SNP C C G novel none TCGA-13-1505-01A-01D-0472-08 TCGA-13-1505-10A-01D-0472-08 C C G G C C Unknown Valid Somatic Phase_I Capture Capture;Sequenom Illumina GAIIx ada62fb4-7589-417b-b03a-795a2e9d4028 e4033772-e098-4afd-88a9-a85871498cbe SLC17A8 246213 broad.mit.edu 36 12 99320298 99320298 + Missense_Mutation SNP G G T novel none TCGA-13-1505-01A-01D-0472-08 TCGA-13-1505-10A-01D-0472-08 G G T T G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx ada62fb4-7589-417b-b03a-795a2e9d4028 e4033772-e098-4afd-88a9-a85871498cbe RSRC2 65117 broad.mit.edu 36 12 121572739 121572739 + Nonsense_Mutation SNP T T A novel none TCGA-13-1505-01A-01D-0472-08 TCGA-13-1505-10A-01D-0472-08 T T A A T T Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx ada62fb4-7589-417b-b03a-795a2e9d4028 e4033772-e098-4afd-88a9-a85871498cbe FREM2 341640 broad.mit.edu 36 13 38160686 38160686 + Missense_Mutation SNP C C T novel none TCGA-13-1505-01A-01D-0472-08 TCGA-13-1505-10A-01D-0472-08 C C T T C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx ada62fb4-7589-417b-b03a-795a2e9d4028 e4033772-e098-4afd-88a9-a85871498cbe C14orf73 91828 broad.mit.edu 36 14 102644578 102644578 + Missense_Mutation SNP G G C novel none TCGA-13-1505-01A-01D-0472-08 TCGA-13-1505-10A-01D-0472-08 G G C C G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx ada62fb4-7589-417b-b03a-795a2e9d4028 e4033772-e098-4afd-88a9-a85871498cbe KLHL25 64410 broad.mit.edu 36 15 84113931 84113931 + Missense_Mutation SNP G G A novel none TCGA-13-1505-01A-01D-0472-08 TCGA-13-1505-10A-01D-0472-08 G G A A G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx ada62fb4-7589-417b-b03a-795a2e9d4028 e4033772-e098-4afd-88a9-a85871498cbe ATP2A1 487 broad.mit.edu 36 16 28817150 28817150 + Silent SNP G G A novel none TCGA-13-1505-01A-01D-0472-08 TCGA-13-1505-10A-01D-0472-08 G G A A G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx ada62fb4-7589-417b-b03a-795a2e9d4028 e4033772-e098-4afd-88a9-a85871498cbe PARD6A 50855 broad.mit.edu 36 16 66253794 66253794 + Missense_Mutation SNP C C T novel none TCGA-13-1505-01A-01D-0472-08 TCGA-13-1505-10A-01D-0472-08 C C T T C C Unknown Valid Somatic Phase_I Capture Sequenom;Capture Illumina GAIIx ada62fb4-7589-417b-b03a-795a2e9d4028 e4033772-e098-4afd-88a9-a85871498cbe RILP 83547 broad.mit.edu 36 17 1496501 1496501 + Silent SNP G G A novel none TCGA-13-1505-01A-01D-0472-08 TCGA-13-1505-10A-01D-0472-08 G G A A G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx ada62fb4-7589-417b-b03a-795a2e9d4028 e4033772-e098-4afd-88a9-a85871498cbe C1QBP 708 broad.mit.edu 36 17 5282175 5282175 + Silent SNP G G C novel none TCGA-13-1505-01A-01D-0472-08 TCGA-13-1505-10A-01D-0472-08 G G C C G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx ada62fb4-7589-417b-b03a-795a2e9d4028 e4033772-e098-4afd-88a9-a85871498cbe RNF112 7732 broad.mit.edu 36 17 19258701 19258701 + Silent SNP G G T novel none TCGA-13-1505-01A-01D-0472-08 TCGA-13-1505-10A-01D-0472-08 G G T T G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx ada62fb4-7589-417b-b03a-795a2e9d4028 e4033772-e098-4afd-88a9-a85871498cbe GAS2L2 246176 broad.mit.edu 36 17 31100273 31100273 + Missense_Mutation SNP A A T novel none TCGA-13-1505-01A-01D-0472-08 TCGA-13-1505-10A-01D-0472-08 A A T T A A Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx ada62fb4-7589-417b-b03a-795a2e9d4028 e4033772-e098-4afd-88a9-a85871498cbe PLEKHH3 79990 broad.mit.edu 36 17 38079926 38079926 + Missense_Mutation SNP G G C novel none TCGA-13-1505-01A-01D-0472-08 TCGA-13-1505-10A-01D-0472-08 G G C C G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx ada62fb4-7589-417b-b03a-795a2e9d4028 e4033772-e098-4afd-88a9-a85871498cbe MC2R 4158 broad.mit.edu 36 18 13875322 13875322 + Missense_Mutation SNP A A T novel none TCGA-13-1505-01A-01D-0472-08 TCGA-13-1505-10A-01D-0472-08 A A T T A A Unknown Valid Somatic Phase_I Capture Sequenom;Capture Illumina GAIIx ada62fb4-7589-417b-b03a-795a2e9d4028 e4033772-e098-4afd-88a9-a85871498cbe MYADM 91663 broad.mit.edu 36 19 59069085 59069085 + Missense_Mutation SNP G G A novel none TCGA-13-1505-01A-01D-0472-08 TCGA-13-1505-10A-01D-0472-08 G G A A G G Unknown Valid Somatic Phase_I Capture Sequenom;Capture;Sequenom Illumina GAIIx ada62fb4-7589-417b-b03a-795a2e9d4028 e4033772-e098-4afd-88a9-a85871498cbe PTPRH 5794 broad.mit.edu 36 19 60403629 60403629 + Missense_Mutation SNP C C A novel none TCGA-13-1505-01A-01D-0472-08 TCGA-13-1505-10A-01D-0472-08 C C A A C C Unknown Valid Somatic Phase_I Capture Sequenom;Capture Illumina GAIIx ada62fb4-7589-417b-b03a-795a2e9d4028 e4033772-e098-4afd-88a9-a85871498cbe GPR113 165082 broad.mit.edu 36 2 26387670 26387670 + Silent SNP G G A novel none TCGA-13-1505-01A-01D-0472-08 TCGA-13-1505-10A-01D-0472-08 G G A A G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx ada62fb4-7589-417b-b03a-795a2e9d4028 e4033772-e098-4afd-88a9-a85871498cbe TTN 7273 broad.mit.edu 36 2 179105808 179105808 + Missense_Mutation SNP G G A novel none TCGA-13-1505-01A-01D-0472-08 TCGA-13-1505-10A-01D-0472-08 G G A A G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx ada62fb4-7589-417b-b03a-795a2e9d4028 e4033772-e098-4afd-88a9-a85871498cbe TTN 7273 broad.mit.edu 36 2 179164298 179164298 + Missense_Mutation SNP A A T novel none TCGA-13-1505-01A-01D-0472-08 TCGA-13-1505-10A-01D-0472-08 A A T T A A Unknown Valid Somatic Phase_I Capture Capture;Sequenom Illumina GAIIx ada62fb4-7589-417b-b03a-795a2e9d4028 e4033772-e098-4afd-88a9-a85871498cbe RQCD1 9125 broad.mit.edu 36 2 219155997 219155997 + Missense_Mutation SNP C C A novel none TCGA-13-1505-01A-01D-0472-08 TCGA-13-1505-10A-01D-0472-08 C C A A C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx ada62fb4-7589-417b-b03a-795a2e9d4028 e4033772-e098-4afd-88a9-a85871498cbe GSTT1 2952 broad.mit.edu 36 22 22706834 22706834 + Silent SNP C C T novel none TCGA-13-1505-01A-01D-0472-08 TCGA-13-1505-10A-01D-0472-08 C C T T C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx ada62fb4-7589-417b-b03a-795a2e9d4028 e4033772-e098-4afd-88a9-a85871498cbe C3orf20 84077 broad.mit.edu 36 3 14778011 14778011 + Missense_Mutation SNP G G T novel none TCGA-13-1505-01A-01D-0472-08 TCGA-13-1505-10A-01D-0472-08 G G T T G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx ada62fb4-7589-417b-b03a-795a2e9d4028 e4033772-e098-4afd-88a9-a85871498cbe GBE1 2632 broad.mit.edu 36 3 81668842 81668842 + Silent SNP G G A novel none TCGA-13-1505-01A-01D-0472-08 TCGA-13-1505-10A-01D-0472-08 G G A A G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx ada62fb4-7589-417b-b03a-795a2e9d4028 e4033772-e098-4afd-88a9-a85871498cbe FAT4 79633 broad.mit.edu 36 4 126460427 126460427 + Silent SNP T T C novel none TCGA-13-1505-01A-01D-0472-08 TCGA-13-1505-10A-01D-0472-08 T T C C T T Unknown Valid Somatic Phase_I Capture Sequenom;Capture Illumina GAIIx ada62fb4-7589-417b-b03a-795a2e9d4028 e4033772-e098-4afd-88a9-a85871498cbe FAT4 79633 broad.mit.edu 36 4 126591860 126591860 + Silent SNP C C A novel none TCGA-13-1505-01A-01D-0472-08 TCGA-13-1505-10A-01D-0472-08 C C A A C C Unknown Valid Somatic Phase_I Capture Sequenom;Capture Illumina GAIIx ada62fb4-7589-417b-b03a-795a2e9d4028 e4033772-e098-4afd-88a9-a85871498cbe GRIA1 2890 broad.mit.edu 36 5 153058649 153058649 + Silent SNP C C T novel none TCGA-13-1505-01A-01D-0472-08 TCGA-13-1505-10A-01D-0472-08 C C T T C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx ada62fb4-7589-417b-b03a-795a2e9d4028 e4033772-e098-4afd-88a9-a85871498cbe ITK 3702 broad.mit.edu 36 5 156597709 156597709 + Missense_Mutation SNP G G C novel none TCGA-13-1505-01A-01D-0472-08 TCGA-13-1505-10A-01D-0472-08 G G C C G G Unknown Valid Somatic Phase_I Capture Sequenom;Capture Illumina GAIIx ada62fb4-7589-417b-b03a-795a2e9d4028 e4033772-e098-4afd-88a9-a85871498cbe COL22A1 169044 broad.mit.edu 36 8 139757998 139757998 + Silent SNP C C A novel none TCGA-13-1505-01A-01D-0472-08 TCGA-13-1505-10A-01D-0472-08 C C A A C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx ada62fb4-7589-417b-b03a-795a2e9d4028 e4033772-e098-4afd-88a9-a85871498cbe KANK1 23189 broad.mit.edu 36 9 702652 702652 + Missense_Mutation SNP G G A novel none TCGA-13-1505-01A-01D-0472-08 TCGA-13-1505-10A-01D-0472-08 G G A A G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx ada62fb4-7589-417b-b03a-795a2e9d4028 e4033772-e098-4afd-88a9-a85871498cbe COL27A1 85301 broad.mit.edu 36 9 116103804 116103804 + Missense_Mutation SNP C C T novel none TCGA-13-1505-01A-01D-0472-08 TCGA-13-1505-10A-01D-0472-08 C C T T C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx ada62fb4-7589-417b-b03a-795a2e9d4028 e4033772-e098-4afd-88a9-a85871498cbe ZNF41 7592 broad.mit.edu 36 X 47192031 47192031 + Silent SNP A A G novel none TCGA-13-1505-01A-01D-0472-08 TCGA-13-1505-10A-01D-0472-08 A A G G A A Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx ada62fb4-7589-417b-b03a-795a2e9d4028 e4033772-e098-4afd-88a9-a85871498cbe ARMCX2 9823 broad.mit.edu 36 X 100798243 100798243 + Missense_Mutation SNP C C T novel none TCGA-13-1505-01A-01D-0472-08 TCGA-13-1505-10A-01D-0472-08 C C T T C C Unknown Valid Somatic Phase_I Capture Sequenom;Capture Illumina GAIIx ada62fb4-7589-417b-b03a-795a2e9d4028 e4033772-e098-4afd-88a9-a85871498cbe UPF3B 65109 broad.mit.edu 36 X 118855948 118855948 + Missense_Mutation SNP G G A novel none TCGA-13-1505-01A-01D-0472-08 TCGA-13-1505-10A-01D-0472-08 G G A A G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx ada62fb4-7589-417b-b03a-795a2e9d4028 e4033772-e098-4afd-88a9-a85871498cbe ELF4 2000 broad.mit.edu 36 X 129031065 129031065 + Missense_Mutation SNP G G A novel none TCGA-13-1505-01A-01D-0472-08 TCGA-13-1505-10A-01D-0472-08 G G A A G G Unknown Valid Somatic Phase_I Capture Sequenom;Capture Illumina GAIIx ada62fb4-7589-417b-b03a-795a2e9d4028 e4033772-e098-4afd-88a9-a85871498cbe FMR1 2332 broad.mit.edu 36 X 146832392 146832392 + Missense_Mutation SNP G G A novel none TCGA-13-1505-01A-01D-0472-08 TCGA-13-1505-10A-01D-0472-08 G G A A G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx ada62fb4-7589-417b-b03a-795a2e9d4028 e4033772-e098-4afd-88a9-a85871498cbe L1CAM 3897 broad.mit.edu 36 X 152784006 152784006 + Silent SNP G G T novel none TCGA-13-1505-01A-01D-0472-08 TCGA-13-1505-10A-01D-0472-08 G G T T G G Unknown Valid Somatic Phase_I Capture Sequenom Illumina GAIIx ada62fb4-7589-417b-b03a-795a2e9d4028 e4033772-e098-4afd-88a9-a85871498cbe GAB3 139716 broad.mit.edu 36 X 153597791 153597791 + Missense_Mutation SNP C C T novel none TCGA-13-1505-01A-01D-0472-08 TCGA-13-1505-10A-01D-0472-08 C C T T C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx ada62fb4-7589-417b-b03a-795a2e9d4028 e4033772-e098-4afd-88a9-a85871498cbe PLD2 5338 broad.mit.edu 36 17 4667228 4667229 + Frame_Shift_Del DEL TG - TG novel none TCGA-13-1505-01A-01D-0472-08 TCGA-13-1505-10A-01D-0472-08 TG TG - - TG TG Unknown Valid Somatic Phase_I Capture Illumina_Capture Illumina GAIIx ada62fb4-7589-417b-b03a-795a2e9d4028 e4033772-e098-4afd-88a9-a85871498cbe TP53 7157 broad.mit.edu 36 17 7520187 7520187 + Frame_Shift_Del DEL A - - novel none TCGA-13-1505-01A-01D-0472-08 TCGA-13-1505-10A-01D-0472-08 A A - - A A Unknown Valid Somatic Phase_I Capture Illumina_Capture Illumina GAIIx ada62fb4-7589-417b-b03a-795a2e9d4028 e4033772-e098-4afd-88a9-a85871498cbe C17orf70 80233 broad.mit.edu 36 17 77123352 77123352 + Frame_Shift_Del DEL A - A novel none TCGA-13-1505-01A-01D-0472-08 TCGA-13-1505-10A-01D-0472-08 A A - - A A Unknown Valid Somatic Phase_I Capture Illumina_Capture Illumina GAIIx ada62fb4-7589-417b-b03a-795a2e9d4028 e4033772-e098-4afd-88a9-a85871498cbe