Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID chromosome_name start stop reference variant type gene_name transcript_name transcript_species transcript_source transcript_version strand transcript_status trv_type c_position amino_acid_change ucsc_cons domain all_domains deletion_substructures transcript_error LRIG2 9860 genome.wustl.edu 36 1 113442849 113442849 + Splice_Site SNP G G A novel Unknown TCGA-13-1506-01A-01W-0549-09 TCGA-13-1506-10A-01W-0550-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 7534b542-88f8-445c-ae4a-9f44fb6798a8 c8e62840-3b96-452f-b0c1-1f755f41931f 1 113442849 113442849 G A SNP LRIG2 NM_014813 human genbank 54_36p 1 provisional splice_site c.1092-1 e9-1 1 - - - no_errors BCL2L15 440603 genome.wustl.edu 36 1 114230738 114230738 + Missense_Mutation SNP T T G novel Unknown TCGA-13-1506-01A-01W-0549-09 TCGA-13-1506-10A-01W-0550-09 T T T G T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 7534b542-88f8-445c-ae4a-9f44fb6798a8 c8e62840-3b96-452f-b0c1-1f755f41931f 1 114230738 114230738 T G SNP BCL2L15 NM_001010922 human genbank 54_36p -1 validated missense c.193 p.N65H 0.96 NULL - - no_errors IGSF3 3321 genome.wustl.edu 36 1 116933217 116933217 + Missense_Mutation SNP T T C novel Unknown TCGA-13-1506-01A-01W-0549-09 TCGA-13-1506-10A-01W-0550-09 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 7534b542-88f8-445c-ae4a-9f44fb6798a8 c8e62840-3b96-452f-b0c1-1f755f41931f 1 116933217 116933217 T C SNP IGSF3 NM_001542 human genbank 54_36p -1 validated missense c.2122 p.T708A 1 NULL - - no_errors LHX8 431707 genome.wustl.edu 36 1 75381411 75381411 + Missense_Mutation SNP C C T novel Unknown TCGA-13-1506-01A-01W-0549-09 TCGA-13-1506-10A-01W-0550-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 7534b542-88f8-445c-ae4a-9f44fb6798a8 c8e62840-3b96-452f-b0c1-1f755f41931f 1 75381411 75381411 C T SNP LHX8 NM_001001933 human genbank 54_36p 1 validated missense c.410 p.S137F 1 NULL - - no_errors FAM160A2 84067 genome.wustl.edu 36 11 6195620 6195620 + Missense_Mutation SNP C C T novel Unknown TCGA-13-1506-01A-01W-0549-09 TCGA-13-1506-10A-01W-0550-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 7534b542-88f8-445c-ae4a-9f44fb6798a8 c8e62840-3b96-452f-b0c1-1f755f41931f 11 6195620 6195620 C T SNP FAM160A2 NM_032127 human genbank 54_36p -1 validated missense c.1814 p.R605Q 1 NULL - - no_errors SYTL2 54843 genome.wustl.edu 36 11 85113990 85113990 + Silent SNP C C T novel Unknown TCGA-13-1506-01A-01W-0549-09 TCGA-13-1506-10A-01W-0550-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 7534b542-88f8-445c-ae4a-9f44fb6798a8 c8e62840-3b96-452f-b0c1-1f755f41931f 11 85113990 85113990 C T SNP SYTL2 NM_206927 human genbank 54_36p -1 reviewed silent c.1158 p.S386 1 NULL HMMPfam_C2;superfamily_C2 domain (Calcium/lipid-binding domain CaLB) - no_errors SSH1 54434 genome.wustl.edu 36 12 107723085 107723085 + Missense_Mutation SNP C C T novel Unknown TCGA-13-1506-01A-01W-0549-09 TCGA-13-1506-10A-01W-0550-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 7534b542-88f8-445c-ae4a-9f44fb6798a8 c8e62840-3b96-452f-b0c1-1f755f41931f 12 107723085 107723085 C T SNP SSH1 NM_018984 human genbank 54_36p -1 provisional missense c.830 p.R277H 1 NULL - - no_errors TMEM132B 114795 genome.wustl.edu 36 12 124701392 124701392 + Silent SNP C C T novel Unknown TCGA-13-1506-01A-01W-0549-09 TCGA-13-1506-10A-01W-0550-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 7534b542-88f8-445c-ae4a-9f44fb6798a8 c8e62840-3b96-452f-b0c1-1f755f41931f 12 124701392 124701392 C T SNP TMEM132B NM_052907 human genbank 54_36p 1 provisional silent c.1839 p.I613 0.39 NULL - - no_errors OVCH1 341350 genome.wustl.edu 36 12 29488472 29488472 + Missense_Mutation SNP C C T novel Unknown TCGA-13-1506-01A-01W-0549-09 TCGA-13-1506-10A-01W-0550-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 7534b542-88f8-445c-ae4a-9f44fb6798a8 c8e62840-3b96-452f-b0c1-1f755f41931f 12 29488472 29488472 C T SNP OVCH1 NM_183378 human genbank 54_36p -1 validated missense c.2890 p.D964N 0.01 NULL HMMPfam_CUB;superfamily_Spermadhesin CUB domain;HMMPfam_Trypsin;superfamily_Trypsin-like serine proteases - no_errors RASSF9 9182 genome.wustl.edu 36 12 84723176 84723176 + Missense_Mutation SNP T T A novel Unknown TCGA-13-1506-01A-01W-0549-09 TCGA-13-1506-10A-01W-0550-09 T T T A T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 7534b542-88f8-445c-ae4a-9f44fb6798a8 c8e62840-3b96-452f-b0c1-1f755f41931f 12 84723176 84723176 T A SNP RASSF9 NM_005447 human genbank 54_36p -1 reviewed missense c.743 p.D248V NULL - - no_errors ATP4B 496 genome.wustl.edu 36 13 113355240 113355240 + Silent SNP G G C novel Unknown TCGA-13-1506-01A-01W-0549-09 TCGA-13-1506-10A-01W-0550-09 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 7534b542-88f8-445c-ae4a-9f44fb6798a8 c8e62840-3b96-452f-b0c1-1f755f41931f 13 113355240 113355240 G C SNP ATP4B NM_000705 human genbank 54_36p -1 reviewed silent c.504 p.P168 0.52 HMMPfam_Na_K-ATPase HMMPfam_Na_K-ATPase - no_errors PABPC1P2 728773 genome.wustl.edu 36 2 147062247 147062247 + Silent SNP T T C novel Unknown TCGA-13-1506-01A-01W-0549-09 TCGA-13-1506-10A-01W-0550-09 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 7534b542-88f8-445c-ae4a-9f44fb6798a8 c8e62840-3b96-452f-b0c1-1f755f41931f 2 147062247 147062247 T C SNP PABPCP2 ENST00000359464 human ensembl 54_36p 1 known silent c.237 p.N79 0.53 NULL - - no_errors RHPN2P1 646090 genome.wustl.edu 36 15 18722625 18722625 + RNA SNP C C G novel Unknown TCGA-13-1506-01A-01W-0549-09 TCGA-13-1506-10A-01W-0550-09 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 7534b542-88f8-445c-ae4a-9f44fb6798a8 c8e62840-3b96-452f-b0c1-1f755f41931f 15 18722625 18722625 C G SNP LOC646090 XR_017120 human genbank 54_36p -1 model rna NULL NULL 1 - - - pseudogene ALPK3 57538 genome.wustl.edu 36 15 83201506 83201506 + Missense_Mutation SNP G G C novel Unknown TCGA-13-1506-01A-01W-0549-09 TCGA-13-1506-10A-01W-0550-09 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 7534b542-88f8-445c-ae4a-9f44fb6798a8 c8e62840-3b96-452f-b0c1-1f755f41931f 15 83201506 83201506 G C SNP ALPK3 NM_020778 human genbank 54_36p 1 validated missense c.3139 p.G1047R NULL HMMPfam_Alpha_kinase;superfamily_Protein kinase-like (PK-like);HMMPfam_I-set;superfamily_Immunoglobulin - no_errors GPR179 440435 genome.wustl.edu 36 17 33737958 33737958 + Missense_Mutation SNP G G A novel Unknown TCGA-13-1506-01A-01W-0549-09 TCGA-13-1506-10A-01W-0550-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 7534b542-88f8-445c-ae4a-9f44fb6798a8 c8e62840-3b96-452f-b0c1-1f755f41931f 17 33737958 33737958 G A SNP GPR179 NM_001004334 human genbank 54_36p -1 validated missense c.5020 p.L1674F NULL - - no_errors FAM38B 63895 genome.wustl.edu 36 18 10681284 10681284 + Nonsense_Mutation SNP G A A novel Unknown TCGA-13-1506-01A-01W-0549-09 TCGA-13-1506-10A-01W-0550-09 G G A A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 7534b542-88f8-445c-ae4a-9f44fb6798a8 c8e62840-3b96-452f-b0c1-1f755f41931f 18 10681284 10681284 G A SNP FAM38B NM_022068 human genbank 54_36p -1 predicted nonsense c.514 p.R172* 0.99 NULL - - no_errors KIAA0427 9811 genome.wustl.edu 36 18 44538502 44538502 + Missense_Mutation SNP G A A novel Unknown TCGA-13-1506-01A-01W-0549-09 TCGA-13-1506-10A-01W-0550-09 G G A A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 7534b542-88f8-445c-ae4a-9f44fb6798a8 c8e62840-3b96-452f-b0c1-1f755f41931f 18 44538502 44538502 G A SNP KIAA0427 NM_014772 human genbank 54_36p 1 validated missense c.799 p.A267T NULL HMMPfam_MIF4G;superfamily_ARM repeat - no_errors BTBD2 55643 genome.wustl.edu 36 19 1948416 1948416 + Missense_Mutation SNP C T T novel Unknown TCGA-13-1506-01A-01W-0549-09 TCGA-13-1506-10A-01W-0550-09 C C T T C C Unknown Valid Somatic 4 Capture Sanger_PCR_WGA 1 dbGAP Illumina GAIIx 7534b542-88f8-445c-ae4a-9f44fb6798a8 c8e62840-3b96-452f-b0c1-1f755f41931f 19 1948416 1948416 C T SNP BTBD2 NM_017797 human genbank 54_36p -1 reviewed missense c.454 p.G152R 1 HMMPfam_BTB HMMPfam_BACK;HMMPfam_PHR;HMMPfam_BTB;superfamily_POZ domain - no_errors ANKRD27 84079 genome.wustl.edu 36 19 37788636 37788636 + Missense_Mutation SNP G G A novel Unknown TCGA-13-1506-01A-01W-0549-09 TCGA-13-1506-10A-01W-0550-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 7534b542-88f8-445c-ae4a-9f44fb6798a8 c8e62840-3b96-452f-b0c1-1f755f41931f 19 37788636 37788636 G A SNP ANKRD27 NM_032139 human genbank 54_36p -1 validated missense c.2438 p.P813L 1 HMMPfam_Ank HMMPfam_Ank;superfamily_Ankyrin repeat;HMMPfam_VPS9;superfamily_VPS9 domain (Pfam 02204) - no_errors BTN1A1 696 genome.wustl.edu 36 6 26610033 26610033 + Missense_Mutation SNP C C A novel Unknown TCGA-13-1506-01A-01W-0549-09 TCGA-13-1506-10A-01W-0550-09 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 7534b542-88f8-445c-ae4a-9f44fb6798a8 c8e62840-3b96-452f-b0c1-1f755f41931f 6 26610033 26610033 C A SNP BTN1A1 NM_001732 human genbank 54_36p 1 validated missense c.316 p.R106S NULL - - no_errors TFAP2D 83741 genome.wustl.edu 36 6 50790800 50790800 + Missense_Mutation SNP G G A novel Unknown TCGA-13-1506-01A-01W-0549-09 TCGA-13-1506-10A-01W-0550-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 7534b542-88f8-445c-ae4a-9f44fb6798a8 c8e62840-3b96-452f-b0c1-1f755f41931f 6 50790800 50790800 G A SNP TFAP2D NM_172238 human genbank 54_36p 1 validated missense c.52 p.G18R 1 NULL - - no_errors ENSG00000214552 0 genome.wustl.edu 36 3 68276961 68276961 + Missense_Mutation SNP C C T novel Unknown TCGA-13-1506-01A-01W-0549-09 TCGA-13-1506-10A-01W-0550-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 7534b542-88f8-445c-ae4a-9f44fb6798a8 c8e62840-3b96-452f-b0c1-1f755f41931f 3 68276961 68276961 C T SNP ENSG00000214552 ENST00000398570 human ensembl 54_36p 1 known missense c.118 p.R40C 0.3 NULL - - no_errors ABCA13 154664 genome.wustl.edu 36 7 48288863 48288863 + Missense_Mutation SNP G G T novel Unknown TCGA-13-1506-01A-01W-0549-09 TCGA-13-1506-10A-01W-0550-09 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 7534b542-88f8-445c-ae4a-9f44fb6798a8 c8e62840-3b96-452f-b0c1-1f755f41931f 7 48288863 48288863 G T SNP ABCA13 NM_152701 human genbank 54_36p 1 reviewed missense c.7363 p.V2455L NULL - - no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region GLIS3 169792 genome.wustl.edu 36 9 3846099 3846099 + Missense_Mutation SNP G G C novel Unknown TCGA-13-1506-01A-01W-0549-09 TCGA-13-1506-10A-01W-0550-09 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 7534b542-88f8-445c-ae4a-9f44fb6798a8 c8e62840-3b96-452f-b0c1-1f755f41931f 9 3846099 3846099 G C SNP GLIS3 NM_001042413 human genbank 54_36p -1 reviewed missense c.2383 p.P795A 1 NULL - - no_errors WASH1 100287171 genome.wustl.edu 36 9 4863 4863 + Silent SNP A A G novel Unknown TCGA-13-1506-01A-01W-0549-09 TCGA-13-1506-10A-01W-0550-09 A A A G A A Unknown Valid Somatic 4 Capture Sanger_PCR_WGA 1 dbGAP Illumina GAIIx 7534b542-88f8-445c-ae4a-9f44fb6798a8 c8e62840-3b96-452f-b0c1-1f755f41931f 9 4863 4863 A G SNP WASH1 NM_182905 human genbank 54_36p -1 validated silent c.739 p.L247 1 NULL - - no_errors CD99L2 83692 genome.wustl.edu 36 X 149689456 149689456 + Missense_Mutation SNP C C T novel Unknown TCGA-13-1506-01A-01W-0549-09 TCGA-13-1506-10A-01W-0550-09 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 7534b542-88f8-445c-ae4a-9f44fb6798a8 c8e62840-3b96-452f-b0c1-1f755f41931f X 149689456 149689456 C T SNP CD99L2 NM_031462 human genbank 54_36p -1 validated missense c.700 p.V234M 1 NULL - - no_errors PPP1R3F 89801 genome.wustl.edu 36 X 49030032 49030032 + Missense_Mutation SNP A A T novel Unknown TCGA-13-1506-01A-01W-0549-09 TCGA-13-1506-10A-01W-0550-09 A A A T A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx 7534b542-88f8-445c-ae4a-9f44fb6798a8 c8e62840-3b96-452f-b0c1-1f755f41931f X 49030032 49030032 A T SNP PPP1R3F NM_033215 human genbank 54_36p 1 validated missense c.1936 p.M646L 0.13 NULL HMMPfam_CBM_21 - no_errors LOC441505 441505 genome.wustl.edu 36 X 85227167 85227167 + RNA SNP C C G novel Unknown TCGA-13-1506-01A-01W-0549-09 TCGA-13-1506-10A-01W-0550-09 C C C G C C Unknown Valid Somatic 4 Capture Sanger_PCR_WGA 1 dbGAP Illumina GAIIx 7534b542-88f8-445c-ae4a-9f44fb6798a8 c8e62840-3b96-452f-b0c1-1f755f41931f X 85227167 85227167 C G SNP LOC441505 XR_016229 human genbank 54_36p -1 model rna NULL NULL 1 - - - pseudogene