Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID KIAA0467 23334 broad.mit.edu 36 1 43686214 43686214 + Missense_Mutation SNP A A T novel none TCGA-13-1512-01A-01W-0545-08 TCGA-13-1512-10A-01W-0546-08 A A T T A A Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx f50f19f0-38e0-4494-a374-683aeb0a09f6 bd645327-9100-4438-813a-35962e65e615 NASP 4678 broad.mit.edu 36 1 45853636 45853636 + Missense_Mutation SNP A A G novel none TCGA-13-1512-01A-01W-0545-08 TCGA-13-1512-10A-01W-0546-08 A A G G A A Unknown Valid Somatic Phase_I Capture Sequenom;Capture Illumina GAIIx f50f19f0-38e0-4494-a374-683aeb0a09f6 bd645327-9100-4438-813a-35962e65e615 ZZZ3 26009 broad.mit.edu 36 1 77870155 77870155 + Silent SNP T T C novel none TCGA-13-1512-01A-01W-0545-08 TCGA-13-1512-10A-01W-0546-08 T T C C T T Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx f50f19f0-38e0-4494-a374-683aeb0a09f6 bd645327-9100-4438-813a-35962e65e615 IQGAP3 128239 broad.mit.edu 36 1 154773631 154773631 + Missense_Mutation SNP G G C novel none TCGA-13-1512-01A-01W-0545-08 TCGA-13-1512-10A-01W-0546-08 G G C C G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx f50f19f0-38e0-4494-a374-683aeb0a09f6 bd645327-9100-4438-813a-35962e65e615 F11R 50848 broad.mit.edu 36 1 159257448 159257448 + Missense_Mutation SNP G G A novel none TCGA-13-1512-01A-01W-0545-08 TCGA-13-1512-10A-01W-0546-08 G G A A G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx f50f19f0-38e0-4494-a374-683aeb0a09f6 bd645327-9100-4438-813a-35962e65e615 TNN 63923 broad.mit.edu 36 1 173315944 173315944 + Missense_Mutation SNP G G C novel none TCGA-13-1512-01A-01W-0545-08 TCGA-13-1512-10A-01W-0546-08 G G C C G G Unknown Valid Somatic Phase_I Capture Capture;Sequenom Illumina GAIIx f50f19f0-38e0-4494-a374-683aeb0a09f6 bd645327-9100-4438-813a-35962e65e615 LHX4 89884 broad.mit.edu 36 1 178507763 178507763 + Silent SNP A A T novel none TCGA-13-1512-01A-01W-0545-08 TCGA-13-1512-10A-01W-0546-08 A A T T A A Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx f50f19f0-38e0-4494-a374-683aeb0a09f6 bd645327-9100-4438-813a-35962e65e615 TTC13 79573 broad.mit.edu 36 1 229127284 229127284 + Silent SNP C C T novel none TCGA-13-1512-01A-01W-0545-08 TCGA-13-1512-10A-01W-0546-08 C C T T C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx f50f19f0-38e0-4494-a374-683aeb0a09f6 bd645327-9100-4438-813a-35962e65e615 TRIM67 440730 broad.mit.edu 36 1 229417775 229417775 + Missense_Mutation SNP C C A novel none TCGA-13-1512-01A-01W-0545-08 TCGA-13-1512-10A-01W-0546-08 C C A A C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx f50f19f0-38e0-4494-a374-683aeb0a09f6 bd645327-9100-4438-813a-35962e65e615 ZNF238 10472 broad.mit.edu 36 1 242284516 242284516 + Missense_Mutation SNP G G A novel none TCGA-13-1512-01A-01W-0545-08 TCGA-13-1512-10A-01W-0546-08 G G A A G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx f50f19f0-38e0-4494-a374-683aeb0a09f6 bd645327-9100-4438-813a-35962e65e615 ZFYVE27 118813 broad.mit.edu 36 10 99500132 99500132 + Missense_Mutation SNP A A G novel none TCGA-13-1512-01A-01W-0545-08 TCGA-13-1512-10A-01W-0546-08 A A G G A A Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx f50f19f0-38e0-4494-a374-683aeb0a09f6 bd645327-9100-4438-813a-35962e65e615 PDCD11 22984 broad.mit.edu 36 10 105168268 105168268 + Missense_Mutation SNP C C T novel none TCGA-13-1512-01A-01W-0545-08 TCGA-13-1512-10A-01W-0546-08 C C T T C C Unknown Valid Somatic Phase_I Capture Sequenom;Capture Illumina GAIIx f50f19f0-38e0-4494-a374-683aeb0a09f6 bd645327-9100-4438-813a-35962e65e615 CTTN 2017 broad.mit.edu 36 11 69946724 69946724 + Missense_Mutation SNP G G C novel none TCGA-13-1512-01A-01W-0545-08 TCGA-13-1512-10A-01W-0546-08 G G C C G G Unknown Valid Somatic Phase_I Capture Sequenom;Capture Illumina GAIIx f50f19f0-38e0-4494-a374-683aeb0a09f6 bd645327-9100-4438-813a-35962e65e615 HOXC8 3224 broad.mit.edu 36 12 52691424 52691424 + Missense_Mutation SNP A A C novel none TCGA-13-1512-01A-01W-0545-08 TCGA-13-1512-10A-01W-0546-08 A A C C A A Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx f50f19f0-38e0-4494-a374-683aeb0a09f6 bd645327-9100-4438-813a-35962e65e615 VPS13C 54832 broad.mit.edu 36 15 59954389 59954389 + Missense_Mutation SNP T T A novel none TCGA-13-1512-01A-01W-0545-08 TCGA-13-1512-10A-01W-0546-08 T T A A T T Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx f50f19f0-38e0-4494-a374-683aeb0a09f6 bd645327-9100-4438-813a-35962e65e615 GTF3C1 2975 broad.mit.edu 36 16 27457177 27457177 + Missense_Mutation SNP A A C novel none TCGA-13-1512-01A-01W-0545-08 TCGA-13-1512-10A-01W-0546-08 A A C C A A Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx f50f19f0-38e0-4494-a374-683aeb0a09f6 bd645327-9100-4438-813a-35962e65e615 SLC38A7 55238 broad.mit.edu 36 16 57271478 57271478 + Silent SNP A A G novel none TCGA-13-1512-01A-01W-0545-08 TCGA-13-1512-10A-01W-0546-08 A A G G A A Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx f50f19f0-38e0-4494-a374-683aeb0a09f6 bd645327-9100-4438-813a-35962e65e615 TP53 7157 broad.mit.edu 36 17 7517845 7517845 + Missense_Mutation SNP C C A rs28934576 unknown TCGA-13-1512-01A-01W-0545-08 TCGA-13-1512-10A-01W-0546-08 C C A A C C Unknown Valid Somatic Phase_I Capture Sequenom;Capture Illumina GAIIx f50f19f0-38e0-4494-a374-683aeb0a09f6 bd645327-9100-4438-813a-35962e65e615 STAT5B 6777 broad.mit.edu 36 17 37633087 37633087 + Missense_Mutation SNP C C A novel none TCGA-13-1512-01A-01W-0545-08 TCGA-13-1512-10A-01W-0546-08 C C A A C C Unknown Valid Somatic Phase_I Capture Sequenom;Capture Illumina GAIIx f50f19f0-38e0-4494-a374-683aeb0a09f6 bd645327-9100-4438-813a-35962e65e615 FAM117A 81558 broad.mit.edu 36 17 45149912 45149912 + Missense_Mutation SNP C C A novel none TCGA-13-1512-01A-01W-0545-08 TCGA-13-1512-10A-01W-0546-08 C C A A C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx f50f19f0-38e0-4494-a374-683aeb0a09f6 bd645327-9100-4438-813a-35962e65e615 CHAD 1101 broad.mit.edu 36 17 45898070 45898070 + Missense_Mutation SNP C C T rs35218093 byCluster;byFrequency TCGA-13-1512-01A-01W-0545-08 TCGA-13-1512-10A-01W-0546-08 C C T T C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx f50f19f0-38e0-4494-a374-683aeb0a09f6 bd645327-9100-4438-813a-35962e65e615 ZNF521 25925 broad.mit.edu 36 18 21058980 21058980 + Missense_Mutation SNP C C T novel none TCGA-13-1512-01A-01W-0545-08 TCGA-13-1512-10A-01W-0546-08 C C T T C C Unknown Valid Somatic Phase_I Capture Sequenom;Capture Illumina GAIIx f50f19f0-38e0-4494-a374-683aeb0a09f6 bd645327-9100-4438-813a-35962e65e615 MUC16 94025 broad.mit.edu 36 19 8838643 8838643 + Missense_Mutation SNP T T C novel none TCGA-13-1512-01A-01W-0545-08 TCGA-13-1512-10A-01W-0546-08 T T C C T T Unknown Valid Somatic Phase_I Capture Sequenom;Capture Illumina GAIIx f50f19f0-38e0-4494-a374-683aeb0a09f6 bd645327-9100-4438-813a-35962e65e615 PKN1 5585 broad.mit.edu 36 19 14423650 14423650 + Missense_Mutation SNP A A G novel none TCGA-13-1512-01A-01W-0545-08 TCGA-13-1512-10A-01W-0546-08 A A G G A A Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx f50f19f0-38e0-4494-a374-683aeb0a09f6 bd645327-9100-4438-813a-35962e65e615 FBL 2091 broad.mit.edu 36 19 45023138 45023138 + Missense_Mutation SNP C C A novel none TCGA-13-1512-01A-01W-0545-08 TCGA-13-1512-10A-01W-0546-08 C C A A C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx f50f19f0-38e0-4494-a374-683aeb0a09f6 bd645327-9100-4438-813a-35962e65e615 SPTBN4 57731 broad.mit.edu 36 19 45764084 45764084 + Silent SNP C C T novel none TCGA-13-1512-01A-01W-0545-08 TCGA-13-1512-10A-01W-0546-08 C C T T C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx f50f19f0-38e0-4494-a374-683aeb0a09f6 bd645327-9100-4438-813a-35962e65e615 AXL 558 broad.mit.edu 36 19 46417207 46417207 + Missense_Mutation SNP T T G novel none TCGA-13-1512-01A-01W-0545-08 TCGA-13-1512-10A-01W-0546-08 T T G G T T Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx f50f19f0-38e0-4494-a374-683aeb0a09f6 bd645327-9100-4438-813a-35962e65e615 ARHGEF1 9138 broad.mit.edu 36 19 47080381 47080381 + Missense_Mutation SNP T T A novel none TCGA-13-1512-01A-01W-0545-08 TCGA-13-1512-10A-01W-0546-08 T T A A T T Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx f50f19f0-38e0-4494-a374-683aeb0a09f6 bd645327-9100-4438-813a-35962e65e615 SCN3A 6328 broad.mit.edu 36 2 165656048 165656048 + Nonsense_Mutation SNP G G A novel none TCGA-13-1512-01A-01W-0545-08 TCGA-13-1512-10A-01W-0546-08 G G A A G G Unknown Valid Somatic Phase_I Capture Capture;Sequenom Illumina GAIIx f50f19f0-38e0-4494-a374-683aeb0a09f6 bd645327-9100-4438-813a-35962e65e615 TMEM198 130612 broad.mit.edu 36 2 220120642 220120642 + Missense_Mutation SNP G G T novel none TCGA-13-1512-01A-01W-0545-08 TCGA-13-1512-10A-01W-0546-08 G G T T G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx f50f19f0-38e0-4494-a374-683aeb0a09f6 bd645327-9100-4438-813a-35962e65e615 SIRPA 140885 broad.mit.edu 36 20 1851108 1851108 + Missense_Mutation SNP G G A rs2422666 byCluster;byFrequency;byHapMap TCGA-13-1512-01A-01W-0545-08 TCGA-13-1512-10A-01W-0546-08 G G A A G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx f50f19f0-38e0-4494-a374-683aeb0a09f6 bd645327-9100-4438-813a-35962e65e615 PCSK2 5126 broad.mit.edu 36 20 17382587 17382587 + Missense_Mutation SNP C C G novel none TCGA-13-1512-01A-01W-0545-08 TCGA-13-1512-10A-01W-0546-08 C C G G C C Unknown Valid Somatic Phase_I Capture Capture;Sequenom Illumina GAIIx f50f19f0-38e0-4494-a374-683aeb0a09f6 bd645327-9100-4438-813a-35962e65e615 DIDO1 11083 broad.mit.edu 36 20 61011659 61011659 + Missense_Mutation SNP G G A novel none TCGA-13-1512-01A-01W-0545-08 TCGA-13-1512-10A-01W-0546-08 G G A A G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx f50f19f0-38e0-4494-a374-683aeb0a09f6 bd645327-9100-4438-813a-35962e65e615 UMODL1 89766 broad.mit.edu 36 21 42383593 42383593 + Missense_Mutation SNP C C T novel none TCGA-13-1512-01A-01W-0545-08 TCGA-13-1512-10A-01W-0546-08 C C T T C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx f50f19f0-38e0-4494-a374-683aeb0a09f6 bd645327-9100-4438-813a-35962e65e615 NUP210 23225 broad.mit.edu 36 3 13353308 13353308 + Silent SNP G G A novel none TCGA-13-1512-01A-01W-0545-08 TCGA-13-1512-10A-01W-0546-08 G G A A G G Unknown Valid Somatic Phase_I Capture Sequenom;Capture Illumina GAIIx f50f19f0-38e0-4494-a374-683aeb0a09f6 bd645327-9100-4438-813a-35962e65e615 TM4SF18 116441 broad.mit.edu 36 3 150525433 150525433 + Missense_Mutation SNP C C T novel none TCGA-13-1512-01A-01W-0545-08 TCGA-13-1512-10A-01W-0546-08 C C T T C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx f50f19f0-38e0-4494-a374-683aeb0a09f6 bd645327-9100-4438-813a-35962e65e615 PIK3CA 5290 broad.mit.edu 36 3 180425287 180425287 + Silent SNP C C A novel none TCGA-13-1512-01A-01W-0545-08 TCGA-13-1512-10A-01W-0546-08 C C A A C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx f50f19f0-38e0-4494-a374-683aeb0a09f6 bd645327-9100-4438-813a-35962e65e615 TACC3 10460 broad.mit.edu 36 4 1699370 1699370 + Missense_Mutation SNP C C T novel none TCGA-13-1512-01A-01W-0545-08 TCGA-13-1512-10A-01W-0546-08 C C T T C C Unknown Valid Somatic Phase_I Capture Sequenom;Capture Illumina GAIIx f50f19f0-38e0-4494-a374-683aeb0a09f6 bd645327-9100-4438-813a-35962e65e615 SFRP2 6423 broad.mit.edu 36 4 154922125 154922125 + Silent SNP C C G novel none TCGA-13-1512-01A-01W-0545-08 TCGA-13-1512-10A-01W-0546-08 C C G G C C Unknown Valid Somatic Phase_I Capture Sequenom;Capture Illumina GAIIx f50f19f0-38e0-4494-a374-683aeb0a09f6 bd645327-9100-4438-813a-35962e65e615 CEP120 153241 broad.mit.edu 36 5 122752141 122752141 + Silent SNP T T C novel none TCGA-13-1512-01A-01W-0545-08 TCGA-13-1512-10A-01W-0546-08 T T C C T T Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx f50f19f0-38e0-4494-a374-683aeb0a09f6 bd645327-9100-4438-813a-35962e65e615 SEPT8 23176 broad.mit.edu 36 5 132124565 132124565 + Missense_Mutation SNP G G T novel none TCGA-13-1512-01A-01W-0545-08 TCGA-13-1512-10A-01W-0546-08 G G T T G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx f50f19f0-38e0-4494-a374-683aeb0a09f6 bd645327-9100-4438-813a-35962e65e615 CCDC69 26112 broad.mit.edu 36 5 150565218 150565218 + Missense_Mutation SNP T T A novel none TCGA-13-1512-01A-01W-0545-08 TCGA-13-1512-10A-01W-0546-08 T T A A T T Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx f50f19f0-38e0-4494-a374-683aeb0a09f6 bd645327-9100-4438-813a-35962e65e615 HERV-FRD 405754 broad.mit.edu 36 6 11213451 11213451 + Missense_Mutation SNP T T C novel none TCGA-13-1512-01A-01W-0545-08 TCGA-13-1512-10A-01W-0546-08 T T C C T T Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx f50f19f0-38e0-4494-a374-683aeb0a09f6 bd645327-9100-4438-813a-35962e65e615 TRIM26 7726 broad.mit.edu 36 6 30272364 30272364 + Missense_Mutation SNP T T G novel none TCGA-13-1512-01A-01W-0545-08 TCGA-13-1512-10A-01W-0546-08 T T G G T T Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx f50f19f0-38e0-4494-a374-683aeb0a09f6 bd645327-9100-4438-813a-35962e65e615 RUNX2 860 broad.mit.edu 36 6 45588070 45588070 + Silent SNP C C A novel none TCGA-13-1512-01A-01W-0545-08 TCGA-13-1512-10A-01W-0546-08 C C A A C C Unknown Valid Somatic Phase_I Capture Sequenom;Capture;Sequenom Illumina GAIIx f50f19f0-38e0-4494-a374-683aeb0a09f6 bd645327-9100-4438-813a-35962e65e615 THSD7A 221981 broad.mit.edu 36 7 11642734 11642734 + Silent SNP A A C novel none TCGA-13-1512-01A-01W-0545-08 TCGA-13-1512-10A-01W-0546-08 A A C C A A Unknown Valid Somatic Phase_I Capture Sequenom;Capture Illumina GAIIx f50f19f0-38e0-4494-a374-683aeb0a09f6 bd645327-9100-4438-813a-35962e65e615 NT5C3 51251 broad.mit.edu 36 7 33023709 33023709 + Missense_Mutation SNP A A T novel none TCGA-13-1512-01A-01W-0545-08 TCGA-13-1512-10A-01W-0546-08 A A T T A A Unknown Valid Somatic Phase_I Capture Sequenom;Capture Illumina GAIIx f50f19f0-38e0-4494-a374-683aeb0a09f6 bd645327-9100-4438-813a-35962e65e615 PEX1 5189 broad.mit.edu 36 7 91985096 91985096 + Silent SNP C C T novel none TCGA-13-1512-01A-01W-0545-08 TCGA-13-1512-10A-01W-0546-08 C C T T C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx f50f19f0-38e0-4494-a374-683aeb0a09f6 bd645327-9100-4438-813a-35962e65e615 CCDC132 55610 broad.mit.edu 36 7 92764000 92764000 + Missense_Mutation SNP T T G novel none TCGA-13-1512-01A-01W-0545-08 TCGA-13-1512-10A-01W-0546-08 T T G G T T Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx f50f19f0-38e0-4494-a374-683aeb0a09f6 bd645327-9100-4438-813a-35962e65e615 SCARA3 51435 broad.mit.edu 36 8 27584534 27584534 + Missense_Mutation SNP G G C novel none TCGA-13-1512-01A-01W-0545-08 TCGA-13-1512-10A-01W-0546-08 G G C C G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx f50f19f0-38e0-4494-a374-683aeb0a09f6 bd645327-9100-4438-813a-35962e65e615 BAG4 9530 broad.mit.edu 36 8 38187027 38187027 + Silent SNP T T A novel none TCGA-13-1512-01A-01W-0545-08 TCGA-13-1512-10A-01W-0546-08 T T A A T T Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx f50f19f0-38e0-4494-a374-683aeb0a09f6 bd645327-9100-4438-813a-35962e65e615 NAPRT1 93100 broad.mit.edu 36 8 144728546 144728546 + Silent SNP G G C novel none TCGA-13-1512-01A-01W-0545-08 TCGA-13-1512-10A-01W-0546-08 G G C C G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx f50f19f0-38e0-4494-a374-683aeb0a09f6 bd645327-9100-4438-813a-35962e65e615 C9orf41 138199 broad.mit.edu 36 9 76821115 76821115 + Missense_Mutation SNP G G A novel none TCGA-13-1512-01A-01W-0545-08 TCGA-13-1512-10A-01W-0546-08 G G A A G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx f50f19f0-38e0-4494-a374-683aeb0a09f6 bd645327-9100-4438-813a-35962e65e615 COL5A1 1289 broad.mit.edu 36 9 136857473 136857473 + Missense_Mutation SNP G G A novel none TCGA-13-1512-01A-01W-0545-08 TCGA-13-1512-10A-01W-0546-08 G G A A G G Unknown Valid Somatic Phase_I Capture Sequenom;Capture Illumina GAIIx f50f19f0-38e0-4494-a374-683aeb0a09f6 bd645327-9100-4438-813a-35962e65e615 IRAK1 3654 broad.mit.edu 36 X 152931859 152931859 + Missense_Mutation SNP C C T novel none TCGA-13-1512-01A-01W-0545-08 TCGA-13-1512-10A-01W-0546-08 C C T T C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx f50f19f0-38e0-4494-a374-683aeb0a09f6 bd645327-9100-4438-813a-35962e65e615