Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error
ALPL	249	genome.wustl.edu	36	1	21760242	21760242	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1416-01A-01W-0549-09	TCGA-24-1416-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	21f5e805-c0b4-487b-9ccd-02963e2369ff	02b11291-821f-4f6a-9d90-c7ec9c2f3cb9	1	21760242	21760242	G	A	SNP	ALPL	NM_000478	human	genbank	54_36p	1	reviewed	missense	c.247	p.E83K	1	HMMPfam_Alk_phosphatase	HMMPfam_Alk_phosphatase,superfamily_Alkaline phosphatase-like	-	no_errors
OR5B21	219968	genome.wustl.edu	36	11	58031919	58031919	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1416-01A-01W-0549-09	TCGA-24-1416-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	21f5e805-c0b4-487b-9ccd-02963e2369ff	02b11291-821f-4f6a-9d90-c7ec9c2f3cb9	11	58031919	58031919	G	A	SNP	OR5B21	NM_001005218	human	genbank	54_36p	-1	provisional	missense	c.236	p.T79M		NULL	-	-	no_errors
HSP90AA1	3320	genome.wustl.edu	36	14	101621019	101621022	+	Frame_Shift_Del	DEL	TTTC	TTTC	-		Unknown	TCGA-24-1416-01A-01W-0549-09	TCGA-24-1416-10A-01W-0549-09	TTTC	TTTC	TTTC	-	TTTC	TTTC	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	21f5e805-c0b4-487b-9ccd-02963e2369ff	02b11291-821f-4f6a-9d90-c7ec9c2f3cb9	14	101621019	101621022	TTTC	-	DEL	HSP90AA1	NM_001017963	human	genbank	54_36p	-1	validated	frame_shift_del	c.1099_1096	p.E366fs	0.847:0.837:0.989:0.994	HMMPfam_HSP90	HSP90,HMMPfam_HSP90,HATPase_c,HMMPfam_HATPase_c,ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase,superfamily_ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase,HSP90 C-terminal domain (C-terminal part of Pfam 00183),superfamily_HSP90 C-terminal domain (C-terminal part of Pfam 00183),Ribosomal protein S5 domain 2-like,superfamily_Ribosomal protein S5 domain 2-like	(deletion:cds_exon[101620771,101621088])	no_errors
DCAF7	10238	genome.wustl.edu	36	17	59016391	59016391	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1416-01A-01W-0549-09	TCGA-24-1416-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	21f5e805-c0b4-487b-9ccd-02963e2369ff	02b11291-821f-4f6a-9d90-c7ec9c2f3cb9	17	59016391	59016391	C	T	SNP	WDR68	NM_005828	human	genbank	54_36p	1	validated	missense	c.826	p.P276S	1	NULL	-	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region
TP53	7157	genome.wustl.edu	36	17	7517819	7517819	+	Missense_Mutation	SNP	G	A	A	rs28934574	Unknown	TCGA-24-1416-01A-01W-0549-09	TCGA-24-1416-10A-01W-0549-09	G	G	A	A	G	G	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	21f5e805-c0b4-487b-9ccd-02963e2369ff	02b11291-821f-4f6a-9d90-c7ec9c2f3cb9	17	7517819	7517819	G	A	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	missense	c.844	p.R282W	1	HMMPfam_P53	superfamily_p53-like transcription factors;superfamily_p53 tetramerization domain;P53_tetramer;HMMPfam_P53_tetramer;P53;HMMPfam_P53;P53_TAD;HMMPfam_P53_TAD	-	no_errors
CPS1	1373	genome.wustl.edu	36	2	211168489	211168489	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-1416-01A-01W-0549-09	TCGA-24-1416-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	21f5e805-c0b4-487b-9ccd-02963e2369ff	02b11291-821f-4f6a-9d90-c7ec9c2f3cb9	2	211168489	211168489	C	T	SNP	CPS1	NM_001875	human	genbank	54_36p	1	reviewed	silent	c.1297	p.L433	1	HMMPfam_CPSase_L_chain	HMMPfam_GATase;HMMPfam_CPSase_sm_chain;superfamily_Carbamoyl phosphate synthetase small subunit N-terminal domain;HMMPfam_CPSase_L_D2;HMMPfam_CPSase_L_D3;HMMPfam_CPSase_L_chain;HMMPfam_MGS;superfamily_Carbamoyl phosphate synthetase large subunit connection domain;superfamily_Class I glutamine amidotransferase-like;superfamily_Methylglyoxal synthase-like;superfamily_PreATP-grasp domain;superfamily_Glutathione synthetase ATP-binding domain-like	-	no_errors
TMC2	117532	genome.wustl.edu	36	20	2541940	2541940	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1416-01A-01W-0549-09	TCGA-24-1416-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	21f5e805-c0b4-487b-9ccd-02963e2369ff	02b11291-821f-4f6a-9d90-c7ec9c2f3cb9	20	2541940	2541940	G	A	SNP	TMC2	NM_080751	human	genbank	54_36p	1	validated	missense	c.1844	p.C615Y	1	NULL	-	-	no_errors
PIK3CA	5290	genome.wustl.edu	36	3	180434779	180434779	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-1416-01A-01W-0549-09	TCGA-24-1416-10A-01W-0549-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	21f5e805-c0b4-487b-9ccd-02963e2369ff	02b11291-821f-4f6a-9d90-c7ec9c2f3cb9	3	180434779	180434779	A	G	SNP	PIK3CA	NM_006218	human	genbank	54_36p	1	reviewed	missense	c.3140	p.H1047R	1	NULL	PI3K_rbd;HMMPfam_PI3K_rbd;PI3_PI4_kinase;HMMPfam_PI3_PI4_kinase;PI3Ka;HMMPfam_PI3Ka;PI3K_C2;HMMPfam_PI3K_C2;PI3K_p85B;HMMPfam_PI3K_p85B	-	no_errors
CSPG5	10675	genome.wustl.edu	36	3	47593978	47593978	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1416-01A-01W-0549-09	TCGA-24-1416-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	21f5e805-c0b4-487b-9ccd-02963e2369ff	02b11291-821f-4f6a-9d90-c7ec9c2f3cb9	3	47593978	47593978	C	T	SNP	CSPG5	NM_006574	human	genbank	54_36p	-1	validated	missense	c.542	p.G181D	1	HMMPfam_Chon_Sulph_att	HMMPfam_Neural_ProG_Cyt;HMMPfam_Chon_Sulph_att;superfamily_EGF/Laminin	-	no_errors
RAD54L2	23132	genome.wustl.edu	36	3	51671746	51671746	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1416-01A-01W-0549-09	TCGA-24-1416-10A-01W-0549-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	21f5e805-c0b4-487b-9ccd-02963e2369ff	02b11291-821f-4f6a-9d90-c7ec9c2f3cb9	3	51671746	51671746	G	T	SNP	RAD54L2	NM_015106	human	genbank	54_36p	1	validated	missense	c.3350	p.R1117L	0.36	NULL	HMMPfam_SNF2_N;HMMPfam_Helicase_C;superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
UGT2B11	10720	genome.wustl.edu	36	4	70114743	70114743	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-1416-01A-01W-0549-09	TCGA-24-1416-10A-01W-0549-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	21f5e805-c0b4-487b-9ccd-02963e2369ff	02b11291-821f-4f6a-9d90-c7ec9c2f3cb9	4	70114743	70114743	C	G	SNP	UGT2B11	NM_001073	human	genbank	54_36p	-1	provisional	missense	c.287	p.R96T	0.01	HMMPfam_UDPGT	HMMPfam_UDPGT;superfamily_UDP-Glycosyltransferase/glycogen phosphorylase	-	no_errors
CCNG2	901	genome.wustl.edu	36	4	78306068	78306068	+	Silent	SNP	C	T	T	novel	Unknown	TCGA-24-1416-01A-01W-0549-09	TCGA-24-1416-10A-01W-0549-09	C	C	T	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	21f5e805-c0b4-487b-9ccd-02963e2369ff	02b11291-821f-4f6a-9d90-c7ec9c2f3cb9	4	78306068	78306068	C	T	SNP	CCNG2	NM_004354	human	genbank	54_36p	1	reviewed	silent	c.1002	p.F334	0.97	NULL	-	-	no_errors
PCDHA3	56145	genome.wustl.edu	36	5	140161156	140161156	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-1416-01A-01W-0549-09	TCGA-24-1416-10A-01W-0549-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	21f5e805-c0b4-487b-9ccd-02963e2369ff	02b11291-821f-4f6a-9d90-c7ec9c2f3cb9	5	140161156	140161156	T	C	SNP	PCDHA3	NM_018906	human	genbank	54_36p	1	reviewed	missense	c.190	p.F64L	0.95	NULL	-	-	no_errors
ACTBL2	345651	genome.wustl.edu	36	5	56813410	56813410	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-24-1416-01A-01W-0549-09	TCGA-24-1416-10A-01W-0549-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	21f5e805-c0b4-487b-9ccd-02963e2369ff	02b11291-821f-4f6a-9d90-c7ec9c2f3cb9	5	56813410	56813410	G	C	SNP	ACTBL2	NM_001017992	human	genbank	54_36p	-1	validated	silent	c.882	p.L294	1	NULL	-	-	no_errors
RIMS2	9699	genome.wustl.edu	36	8	105094889	105094889	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-24-1416-01A-01W-0549-09	TCGA-24-1416-10A-01W-0549-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	21f5e805-c0b4-487b-9ccd-02963e2369ff	02b11291-821f-4f6a-9d90-c7ec9c2f3cb9	8	105094889	105094889	T	G	SNP	RIMS2	NM_001100117	human	genbank	54_36p	1	validated	missense	c.3088	p.S1030A	1	NULL	-	-	no_errors
FATE1	89885	genome.wustl.edu	36	X	150641049	150641049	+	Silent	SNP	A	A	C	novel	Unknown	TCGA-24-1416-01A-01W-0549-09	TCGA-24-1416-10A-01W-0549-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	21f5e805-c0b4-487b-9ccd-02963e2369ff	02b11291-821f-4f6a-9d90-c7ec9c2f3cb9	X	150641049	150641049	A	C	SNP	FATE1	NM_033085	human	genbank	54_36p	1	validated	silent	c.360	p.A120		NULL	-	-	no_errors
LOC643310	643310	genome.wustl.edu	36	X	92430081	92430081	+	RNA	SNP	A	A	T	novel	Unknown	TCGA-24-1416-01A-01W-0549-09	TCGA-24-1416-10A-01W-0549-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	21f5e805-c0b4-487b-9ccd-02963e2369ff	02b11291-821f-4f6a-9d90-c7ec9c2f3cb9	X	92430081	92430081	A	T	SNP	LOC643310	XR_038903	human	genbank	54_36p	-1	model	rna	NULL	NULL	1	-	-	-	pseudogene