Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID chromosome_name start stop reference variant type gene_name transcript_name transcript_species transcript_source transcript_version strand transcript_status trv_type c_position amino_acid_change ucsc_cons domain all_domains deletion_substructures transcript_error LIX1L 128077 genome.wustl.edu 36 1 144209961 144209961 + Missense_Mutation SNP G G C novel Unknown TCGA-24-1417-01A-01W-0549-09 TCGA-24-1417-10A-01W-0549-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx f6f43d04-a9e3-48c8-a276-3bebcaf416d7 7018df4b-5eed-40c1-8e7c-a31b2b78c91a 1 144209961 144209961 G C SNP LIX1L NM_153713 human genbank 54_36p 1 provisional missense c.840 p.W280C 1 NULL - - no_errors ADAM15 8751 genome.wustl.edu 36 1 153296343 153296343 + Missense_Mutation SNP C C T novel Unknown TCGA-24-1417-01A-01W-0549-09 TCGA-24-1417-10A-01W-0549-09 C C C T C C Unknown Valid Somatic 4 Capture Sanger_PCR_WGA 1 dbGAP Illumina GAIIx f6f43d04-a9e3-48c8-a276-3bebcaf416d7 7018df4b-5eed-40c1-8e7c-a31b2b78c91a 1 153296343 153296343 C T SNP ADAM15 NM_207197 human genbank 54_36p 1 reviewed missense c.1204 p.L402F 0.99 HMMPfam_Reprolysin "superfamily_Metalloproteases (""zincins"") catalytic domain;EGF/Laminin;superfamily_EGF/Laminin;Reprolysin;HMMPfam_Reprolysin;Disintegrin;HMMPfam_Disintegrin;Blood coagulation inhibitor (disintegrin);superfamily_Blood coagulation inhibitor (disintegrin);Pep_M12B_propep;HMMPfam_Pep_M12B_propep;ADAM_CR;HMMPfam_ADAM_CR;EGF_2;HMMPfam_EGF_2;Metalloproteases (""zincins"") catalytic domain" - no_errors SCAMP3 10067 genome.wustl.edu 36 1 153492747 153492747 + Nonsense_Mutation SNP G G A novel Unknown TCGA-24-1417-01A-01W-0549-09 TCGA-24-1417-10A-01W-0549-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx f6f43d04-a9e3-48c8-a276-3bebcaf416d7 7018df4b-5eed-40c1-8e7c-a31b2b78c91a 1 153492747 153492747 G A SNP SCAMP3 NM_005698 human genbank 54_36p -1 reviewed nonsense c.985 p.R329* 1 NULL - - no_errors FCRL4 83417 genome.wustl.edu 36 1 155824329 155824329 + Missense_Mutation SNP C C A novel Unknown TCGA-24-1417-01A-01W-0549-09 TCGA-24-1417-10A-01W-0549-09 C C C A C C Unknown Valid Somatic 4 Capture Sanger_PCR_WGA 1 dbGAP Illumina GAIIx f6f43d04-a9e3-48c8-a276-3bebcaf416d7 7018df4b-5eed-40c1-8e7c-a31b2b78c91a 1 155824329 155824329 C A SNP FCRL4 NM_031282 human genbank 54_36p -1 provisional missense c.512 p.G171V 0 NULL HMMPfam_ig;superfamily_Immunoglobulin - no_errors UCK2 7371 genome.wustl.edu 36 1 164139129 164139129 + Missense_Mutation SNP T T C novel Unknown TCGA-24-1417-01A-01W-0549-09 TCGA-24-1417-10A-01W-0549-09 T T T C T T Unknown Valid Somatic 4 Capture Sanger_PCR_WGA 1 dbGAP Illumina GAIIx f6f43d04-a9e3-48c8-a276-3bebcaf416d7 7018df4b-5eed-40c1-8e7c-a31b2b78c91a 1 164139129 164139129 T C SNP UCK2 NM_012474 human genbank 54_36p 1 reviewed missense c.586 p.F196L 1 HMMPfam_PRK HMMPfam_PRK;superfamily_P-loop containing nucleoside triphosphate hydrolases - no_errors POGK 57645 genome.wustl.edu 36 1 165086065 165086065 + Missense_Mutation SNP C C T novel Unknown TCGA-24-1417-01A-01W-0549-09 TCGA-24-1417-10A-01W-0549-09 C C C T C C Unknown Valid Somatic 4 Capture Sanger_PCR_WGA 1 dbGAP Illumina GAIIx f6f43d04-a9e3-48c8-a276-3bebcaf416d7 7018df4b-5eed-40c1-8e7c-a31b2b78c91a 1 165086065 165086065 C T SNP POGK NM_017542 human genbank 54_36p 1 reviewed missense c.1625 p.P542L 0.29 NULL - - no_errors HFM1 164045 genome.wustl.edu 36 1 91554067 91554067 + Silent SNP T T C novel Unknown TCGA-24-1417-01A-01W-0549-09 TCGA-24-1417-10A-01W-0549-09 T T Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx f6f43d04-a9e3-48c8-a276-3bebcaf416d7 7018df4b-5eed-40c1-8e7c-a31b2b78c91a 1 91554067 91554067 T C SNP HFM1 NM_001017975 human genbank 54_36p -1 validated silent c.3033 p.L1011 0.97 NULL - - no_errors ABLIM1 3983 genome.wustl.edu 36 10 116407732 116407732 + Missense_Mutation SNP C C T novel Unknown TCGA-24-1417-01A-01W-0549-09 TCGA-24-1417-10A-01W-0549-09 C C C T C C Unknown Valid Somatic 4 Capture Sanger_PCR_WGA 1 dbGAP Illumina GAIIx f6f43d04-a9e3-48c8-a276-3bebcaf416d7 7018df4b-5eed-40c1-8e7c-a31b2b78c91a 10 116407732 116407732 C T SNP ABLIM1 NM_002313 human genbank 54_36p -1 reviewed missense c.218 p.R73H 0 NULL HMMPfam_LIM;HMMPfam_VHP;superfamily_VHP Villin headpiece domain;superfamily_Glucocorticoid receptor-like (DNA-binding domain) - no_errors MEIG1 644890 genome.wustl.edu 36 10 15048569 15048569 + Nonsense_Mutation SNP T T A novel Unknown TCGA-24-1417-01A-01W-0549-09 TCGA-24-1417-10A-01W-0549-09 T T Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx f6f43d04-a9e3-48c8-a276-3bebcaf416d7 7018df4b-5eed-40c1-8e7c-a31b2b78c91a 10 15048569 15048569 T A SNP MEIG1 NM_001080836 human genbank 54_36p 1 validated nonsense c.96 p.Y32* 1 NULL - - no_errors DDX50 79009 genome.wustl.edu 36 10 70365827 70365827 + Silent SNP C C T novel Unknown TCGA-24-1417-01A-01W-0549-09 TCGA-24-1417-10A-01W-0549-09 C C C T C C Unknown Valid Somatic 4 Capture Sanger_PCR_WGA 1 dbGAP Illumina GAIIx f6f43d04-a9e3-48c8-a276-3bebcaf416d7 7018df4b-5eed-40c1-8e7c-a31b2b78c91a 10 70365827 70365827 C T SNP DDX50 NM_024045 human genbank 54_36p 1 reviewed silent c.1581 p.S527 1 NULL HMMPfam_Helicase_C;HMMPfam_DEAD;HMMPfam_GUCT;superfamily_P-loop containing nucleoside triphosphate hydrolases - no_errors DNTT 1791 genome.wustl.edu 36 10 98072464 98072464 + Missense_Mutation SNP C C A novel Unknown TCGA-24-1417-01A-01W-0549-09 TCGA-24-1417-10A-01W-0549-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx f6f43d04-a9e3-48c8-a276-3bebcaf416d7 7018df4b-5eed-40c1-8e7c-a31b2b78c91a 10 98072464 98072464 C A SNP DNTT NM_004088 human genbank 54_36p 1 reviewed missense c.739 p.Q247K 0.89 NULL HMMPfam_BRCT;HMMPfam_NTP_transf_2;superfamily_DNA polymerase beta N-terminal domain-like;superfamily_BRCT domain;superfamily_Nucleotidyltransferase;superfamily_DNA polymerase beta-like second domain - no_errors ZBTB16 7704 genome.wustl.edu 36 11 113440042 113440042 + Missense_Mutation SNP C C A novel Unknown TCGA-24-1417-01A-01W-0549-09 TCGA-24-1417-10A-01W-0549-09 C C C A C C Unknown Valid Somatic 4 Capture Sanger_PCR_WGA 1 dbGAP Illumina GAIIx f6f43d04-a9e3-48c8-a276-3bebcaf416d7 7018df4b-5eed-40c1-8e7c-a31b2b78c91a 11 113440042 113440042 C A SNP ZBTB16 NM_001018011 human genbank 54_36p 1 reviewed missense c.810 p.D270E 1 NULL HMMPfam_zf-C2H2;HMMPfam_BTB;superfamily_POZ domain;superfamily_C2H2 and C2HC zinc fingers - no_errors ARCN1 372 genome.wustl.edu 36 11 117959773 117959773 + Missense_Mutation SNP G G C novel Unknown TCGA-24-1417-01A-01W-0549-09 TCGA-24-1417-10A-01W-0549-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx f6f43d04-a9e3-48c8-a276-3bebcaf416d7 7018df4b-5eed-40c1-8e7c-a31b2b78c91a 11 117959773 117959773 G C SNP ARCN1 NM_001655 human genbank 54_36p 1 reviewed missense c.487 p.A163P 1 NULL - - no_errors CARS 833 genome.wustl.edu 36 11 2995080 2995080 + Silent SNP T T A novel Unknown TCGA-24-1417-01A-01W-0549-09 TCGA-24-1417-10A-01W-0549-09 T T Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx f6f43d04-a9e3-48c8-a276-3bebcaf416d7 7018df4b-5eed-40c1-8e7c-a31b2b78c91a 11 2995080 2995080 T A SNP CARS NM_001014437 human genbank 54_36p -1 reviewed silent c.1749 p.A583 0.86 NULL superfamily_Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases;superfamily_Glutathione S-transferase (GST) C-terminal domain;HMMPfam_tRNA-synt_1e;superfamily_Nucleotidylyl transferase - no_errors MADD 8567 genome.wustl.edu 36 11 47267100 47267100 + Missense_Mutation SNP G G A novel Unknown TCGA-24-1417-01A-01W-0549-09 TCGA-24-1417-10A-01W-0549-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx f6f43d04-a9e3-48c8-a276-3bebcaf416d7 7018df4b-5eed-40c1-8e7c-a31b2b78c91a 11 47267100 47267100 G A SNP MADD NM_003682 human genbank 54_36p 1 reviewed missense c.2659 p.G887R 1 NULL HMMPfam_DENN;HMMPfam_dDENN;HMMPfam_uDENN - no_errors AHNAK 79026 genome.wustl.edu 36 11 62052072 62052072 + Silent SNP G G C novel Unknown TCGA-24-1417-01A-01W-0549-09 TCGA-24-1417-10A-01W-0549-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx f6f43d04-a9e3-48c8-a276-3bebcaf416d7 7018df4b-5eed-40c1-8e7c-a31b2b78c91a 11 62052072 62052072 G C SNP AHNAK NM_001620 human genbank 54_36p -1 validated silent c.6393 p.V2131 0.69 NULL HMMPfam_PDZ;superfamily_PDZ domain-like;HMMPfam_CheC - no_errors KDM2A 22992 genome.wustl.edu 36 11 66774457 66774457 + Missense_Mutation SNP A A C novel Unknown TCGA-24-1417-01A-01W-0549-09 TCGA-24-1417-10A-01W-0549-09 A A Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx f6f43d04-a9e3-48c8-a276-3bebcaf416d7 7018df4b-5eed-40c1-8e7c-a31b2b78c91a 11 66774457 66774457 A C SNP FBXL11 NM_012308 human genbank 54_36p 1 reviewed missense c.2380 p.I794L 1 NULL HMMPfam_LRR_1;HMMPfam_F-box;HMMPfam_zf-CXXC;superfamily_FYVE/PHD zinc finger;HMMPfam_JmjC;superfamily_Clavaminate synthase-like;superfamily_RNI-like - no_errors NALCN 259232 genome.wustl.edu 36 13 100533220 100533220 + Missense_Mutation SNP G G T novel Unknown TCGA-24-1417-01A-01W-0549-09 TCGA-24-1417-10A-01W-0549-09 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx f6f43d04-a9e3-48c8-a276-3bebcaf416d7 7018df4b-5eed-40c1-8e7c-a31b2b78c91a 13 100533220 100533220 G T SNP NALCN NM_052867 human genbank 54_36p -1 validated missense c.3706 p.P1236T 1 NULL HMMPfam_Ion_trans;superfamily_Voltage-gated potassium channels - no_errors KBTBD7 84078 genome.wustl.edu 36 13 40664661 40664661 + Missense_Mutation SNP C C G novel Unknown TCGA-24-1417-01A-01W-0549-09 TCGA-24-1417-10A-01W-0549-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx f6f43d04-a9e3-48c8-a276-3bebcaf416d7 7018df4b-5eed-40c1-8e7c-a31b2b78c91a 13 40664661 40664661 C G SNP KBTBD7 NM_032138 human genbank 54_36p -1 provisional missense c.1733 p.W578S 1 NULL - - no_errors RPGRIP1 57096 genome.wustl.edu 36 14 20832711 20832711 + Missense_Mutation SNP A A G novel Unknown TCGA-24-1417-01A-01W-0549-09 TCGA-24-1417-10A-01W-0549-09 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx f6f43d04-a9e3-48c8-a276-3bebcaf416d7 7018df4b-5eed-40c1-8e7c-a31b2b78c91a 14 20832711 20832711 A G SNP RPGRIP1 NM_020366 human genbank 54_36p 1 reviewed missense c.121 p.M41V 0.9 NULL HMMPfam_C2;superfamily_C2 domain (Calcium/lipid-binding domain CaLB) - no_errors SLC24A4 123041 genome.wustl.edu 36 14 92022774 92022774 + Silent SNP C C T novel Unknown TCGA-24-1417-01A-01W-0549-09 TCGA-24-1417-10A-01W-0549-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx f6f43d04-a9e3-48c8-a276-3bebcaf416d7 7018df4b-5eed-40c1-8e7c-a31b2b78c91a 14 92022774 92022774 C T SNP SLC24A4 NM_153646 human genbank 54_36p 1 validated silent c.1383 p.I461 1 HMMPfam_Na_Ca_ex HMMPfam_Na_Ca_ex - no_errors VPS33B 26276 genome.wustl.edu 36 15 89349139 89349139 + Silent SNP G G C novel Unknown TCGA-24-1417-01A-01W-0549-09 TCGA-24-1417-10A-01W-0549-09 G G G C G G Unknown Valid Somatic 4 Capture Sanger_PCR_WGA 1 dbGAP Illumina GAIIx f6f43d04-a9e3-48c8-a276-3bebcaf416d7 7018df4b-5eed-40c1-8e7c-a31b2b78c91a 15 89349139 89349139 G C SNP VPS33B NM_018668 human genbank 54_36p -1 reviewed silent c.1197 p.L399 0.99 HMMPfam_Sec1 HMMPfam_Sec1;superfamily_Sec1/munc18-like (SM) proteins - no_errors IL21R 50615 genome.wustl.edu 36 16 27364072 27364072 + Nonsense_Mutation SNP G G A novel Unknown TCGA-24-1417-01A-01W-0549-09 TCGA-24-1417-10A-01W-0549-09 G G G A G G Unknown Valid Somatic 4 Capture Sanger_PCR_WGA 1 dbGAP Illumina GAIIx f6f43d04-a9e3-48c8-a276-3bebcaf416d7 7018df4b-5eed-40c1-8e7c-a31b2b78c91a 16 27364072 27364072 G A SNP IL21R NM_021798 human genbank 54_36p 1 reviewed nonsense c.759 p.W253* 0.08 NULL superfamily_Fibronectin type III - no_errors KIAA0556 23247 genome.wustl.edu 36 16 27696440 27696440 + Silent SNP G G T novel Unknown TCGA-24-1417-01A-01W-0549-09 TCGA-24-1417-10A-01W-0549-09 G G G T G G Unknown Valid Somatic 4 Capture Sanger_PCR_WGA 1 dbGAP Illumina GAIIx f6f43d04-a9e3-48c8-a276-3bebcaf416d7 7018df4b-5eed-40c1-8e7c-a31b2b78c91a 16 27696440 27696440 G T SNP KIAA0556 NM_015202 human genbank 54_36p 1 validated silent c.4560 p.V1520 1 NULL superfamily_Osmotin thaumatin-like protein;superfamily_Galactose-binding domain-like - no_errors ITGAD 3681 genome.wustl.edu 36 16 31320973 31320973 + Missense_Mutation SNP T T C novel Unknown TCGA-24-1417-01A-01W-0549-09 TCGA-24-1417-10A-01W-0549-09 T T Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx f6f43d04-a9e3-48c8-a276-3bebcaf416d7 7018df4b-5eed-40c1-8e7c-a31b2b78c91a 16 31320973 31320973 T C SNP ITGAD NM_005353 human genbank 54_36p 1 validated missense c.464 p.I155T 1 HMMPfam_VWA HMMPfam_VWA;HMMPfam_Integrin_alpha;HMMPfam_FG-GAP;HMMPfam_Integrin_alpha2;superfamily_vWA-like;superfamily_Integrin domains;superfamily_Integrin alpha N-terminal domain - no_errors TRPV3 162514 genome.wustl.edu 36 17 3371026 3371026 + Missense_Mutation SNP A A C novel Unknown TCGA-24-1417-01A-01W-0549-09 TCGA-24-1417-10A-01W-0549-09 A A A C A A Unknown Valid Somatic 4 Capture Sanger_PCR_WGA 1 dbGAP Illumina GAIIx f6f43d04-a9e3-48c8-a276-3bebcaf416d7 7018df4b-5eed-40c1-8e7c-a31b2b78c91a 17 3371026 3371026 A C SNP TRPV3 NM_145068 human genbank 54_36p -1 reviewed missense c.1801 p.F601V 1 HMMPfam_Ion_trans HMMPfam_Ank;superfamily_Ankyrin repeat;HMMPfam_Ion_trans;superfamily_Voltage-gated potassium channels - no_errors ACTG1 71 genome.wustl.edu 36 17 77092914 77092914 + Missense_Mutation SNP A A T novel Unknown TCGA-24-1417-01A-01W-0549-09 TCGA-24-1417-10A-01W-0549-09 A A A T A A Unknown Valid Somatic 4 Capture Sanger_PCR_WGA 1 dbGAP Illumina GAIIx f6f43d04-a9e3-48c8-a276-3bebcaf416d7 7018df4b-5eed-40c1-8e7c-a31b2b78c91a 17 77092914 77092914 A T SNP ACTG1 NM_001614 human genbank 54_36p -1 reviewed missense c.697 p.S233T 1 HMMPfam_Actin HMMPfam_Actin;superfamily_Actin-like ATPase domain - no_errors HGS 9146 genome.wustl.edu 36 17 77263777 77263777 + Silent SNP G A A novel Unknown TCGA-24-1417-01A-01W-0549-09 TCGA-24-1417-10A-01W-0549-09 G G A A G G Unknown Valid Somatic 4 Capture Sanger_PCR_WGA 1 dbGAP Illumina GAIIx f6f43d04-a9e3-48c8-a276-3bebcaf416d7 7018df4b-5eed-40c1-8e7c-a31b2b78c91a 17 77263777 77263777 G A SNP HGS NM_004712 human genbank 54_36p 1 provisional silent c.153 p.K51 1 HMMPfam_VHS HMMPfam_FYVE;HMMPfam_VHS;HMMPfam_UIM;superfamily_FYVE/PHD zinc finger;superfamily_ENTH/VHS domain - no_errors SKA1 220134 genome.wustl.edu 36 18 46171614 46171614 + Missense_Mutation SNP G G A novel Unknown TCGA-24-1417-01A-01W-0549-09 TCGA-24-1417-10A-01W-0549-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx f6f43d04-a9e3-48c8-a276-3bebcaf416d7 7018df4b-5eed-40c1-8e7c-a31b2b78c91a 18 46171614 46171614 G A SNP C18orf24 NM_001039535 human genbank 54_36p 1 validated missense c.572 p.R191K 1 HMMPfam_DUF1395 HMMPfam_DUF1395 - no_errors EMR3 84658 genome.wustl.edu 36 19 14618991 14618991 + Splice_Site SNP A A C novel Unknown TCGA-24-1417-01A-01W-0549-09 TCGA-24-1417-10A-01W-0549-09 A A Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx f6f43d04-a9e3-48c8-a276-3bebcaf416d7 7018df4b-5eed-40c1-8e7c-a31b2b78c91a 19 14618991 14618991 A C SNP EMR3 NM_032571 human genbank 54_36p -1 reviewed splice_site c.882+2 e8+2 0.86 - - - no_errors ZNF536 9745 genome.wustl.edu 36 19 35628128 35628128 + Missense_Mutation SNP T T A novel Unknown TCGA-24-1417-01A-01W-0549-09 TCGA-24-1417-10A-01W-0549-09 T T T A T T Unknown Valid Somatic 4 Capture Sanger_PCR_WGA 1 dbGAP Illumina GAIIx f6f43d04-a9e3-48c8-a276-3bebcaf416d7 7018df4b-5eed-40c1-8e7c-a31b2b78c91a 19 35628128 35628128 T A SNP ZNF536 NM_014717 human genbank 54_36p 1 provisional missense c.1819 p.F607I 1 NULL - - no_errors PLA2G4C 8605 genome.wustl.edu 36 19 53294818 53294818 + Silent SNP G G T novel Unknown TCGA-24-1417-01A-01W-0549-09 TCGA-24-1417-10A-01W-0549-09 G G G T G G Unknown Valid Somatic 4 Capture Sanger_PCR_WGA 1 dbGAP Illumina GAIIx f6f43d04-a9e3-48c8-a276-3bebcaf416d7 7018df4b-5eed-40c1-8e7c-a31b2b78c91a 19 53294818 53294818 G T SNP PLA2G4C NM_003706 human genbank 54_36p -1 provisional silent c.369 p.T123 0.25 NULL - - no_errors SCN2A 6326 genome.wustl.edu 36 2 165878837 165878837 + Silent SNP G G A novel Unknown TCGA-24-1417-01A-01W-0549-09 TCGA-24-1417-10A-01W-0549-09 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx f6f43d04-a9e3-48c8-a276-3bebcaf416d7 7018df4b-5eed-40c1-8e7c-a31b2b78c91a 2 165878837 165878837 G A SNP SCN2A NM_001040142 human genbank 54_36p 1 reviewed silent c.1356 p.Q452 1 NULL HMMPfam_IQ;HMMPfam_Ion_trans;HMMPfam_Na_trans_assoc;superfamily_EF-hand;superfamily_Voltage-gated potassium channels - no_errors XIRP2 129446 genome.wustl.edu 36 2 167813024 167813024 + Silent SNP A A G novel Unknown TCGA-24-1417-01A-01W-0549-09 TCGA-24-1417-10A-01W-0549-09 A A A G A A Unknown Valid Somatic 4 Capture Sanger_PCR_WGA 1 dbGAP Illumina GAIIx f6f43d04-a9e3-48c8-a276-3bebcaf416d7 7018df4b-5eed-40c1-8e7c-a31b2b78c91a 2 167813024 167813024 A G SNP XIRP2 NM_152381 human genbank 54_36p 1 validated silent c.6876 p.P2292 1 NULL - - no_errors SLC11A1 6556 genome.wustl.edu 36 2 218967704 218967704 + Silent SNP C C A novel Unknown TCGA-24-1417-01A-01W-0549-09 TCGA-24-1417-10A-01W-0549-09 C C C A C C Unknown Valid Somatic 4 Capture Sanger_PCR_WGA 1 dbGAP Illumina GAIIx f6f43d04-a9e3-48c8-a276-3bebcaf416d7 7018df4b-5eed-40c1-8e7c-a31b2b78c91a 2 218967704 218967704 C A SNP SLC11A1 NM_000578 human genbank 54_36p 1 reviewed silent c.1494 p.G498 0.05 NULL HMMPfam_Nramp - no_errors NRXN1 9378 genome.wustl.edu 36 2 50172113 50172113 + Silent SNP C C T novel Unknown TCGA-24-1417-01A-01W-0549-09 TCGA-24-1417-10A-01W-0549-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx f6f43d04-a9e3-48c8-a276-3bebcaf416d7 7018df4b-5eed-40c1-8e7c-a31b2b78c91a 2 50172113 50172113 C T SNP NRXN1 NM_004801 human genbank 54_36p -1 reviewed silent c.3570 p.K1190 0.99 HMMPfam_Laminin_G_2 HMMPfam_EGF;superfamily_Concanavalin A-like lectins/glucanases;HMMPfam_Laminin_G_2;superfamily_EGF/Laminin - no_errors REL 5966 genome.wustl.edu 36 2 60972423 60972423 + Missense_Mutation SNP G G C novel Unknown TCGA-24-1417-01A-01W-0549-09 TCGA-24-1417-10A-01W-0549-09 G G G C G G Unknown Valid Somatic 4 Capture Sanger_PCR_WGA 1 dbGAP Illumina GAIIx f6f43d04-a9e3-48c8-a276-3bebcaf416d7 7018df4b-5eed-40c1-8e7c-a31b2b78c91a 2 60972423 60972423 G C SNP REL NM_002908 human genbank 54_36p 1 validated missense c.112 p.E38Q 1 HMMPfam_RHD HMMPfam_TIG;superfamily_p53-like transcription factors;HMMPfam_RHD;superfamily_E set domains - no_errors TRIM43 129868 genome.wustl.edu 36 2 95625790 95625790 + Missense_Mutation SNP G G C novel Unknown TCGA-24-1417-01A-01W-0549-09 TCGA-24-1417-10A-01W-0549-09 G G G C G G Unknown Valid Somatic 4 Capture Sanger_PCR_WGA 1 dbGAP Illumina GAIIx f6f43d04-a9e3-48c8-a276-3bebcaf416d7 7018df4b-5eed-40c1-8e7c-a31b2b78c91a 2 95625790 95625790 G C SNP TRIM43 NM_138800 human genbank 54_36p 1 provisional missense c.621 p.E207D 0 NULL - - no_errors SEC62 7095 genome.wustl.edu 36 3 171176123 171176123 + Missense_Mutation SNP G G C novel Unknown TCGA-24-1417-01A-01W-0549-09 TCGA-24-1417-10A-01W-0549-09 G G G C G G Unknown Valid Somatic 4 Capture Sanger_PCR_WGA 1 dbGAP Illumina GAIIx f6f43d04-a9e3-48c8-a276-3bebcaf416d7 7018df4b-5eed-40c1-8e7c-a31b2b78c91a 3 171176123 171176123 G C SNP SEC62 NM_003262 human genbank 54_36p 1 reviewed missense c.70 p.V24L 1 NULL - - no_errors THPO 7066 genome.wustl.edu 36 3 185573473 185573473 + Missense_Mutation SNP A A G novel Unknown TCGA-24-1417-01A-01W-0549-09 TCGA-24-1417-10A-01W-0549-09 A A A G A A Unknown Valid Somatic 4 Capture Sanger_PCR_WGA 1 dbGAP Illumina GAIIx f6f43d04-a9e3-48c8-a276-3bebcaf416d7 7018df4b-5eed-40c1-8e7c-a31b2b78c91a 3 185573473 185573473 A G SNP THPO NM_000460 human genbank 54_36p -1 reviewed missense c.584 p.L195P 0.95 NULL - - no_errors ADH1C 126 genome.wustl.edu 36 4 100488002 100488002 + Silent SNP G G A novel Unknown TCGA-24-1417-01A-01W-0549-09 TCGA-24-1417-10A-01W-0549-09 G G G A G G Unknown Valid Somatic 4 Capture Sanger_PCR_WGA 1 dbGAP Illumina GAIIx f6f43d04-a9e3-48c8-a276-3bebcaf416d7 7018df4b-5eed-40c1-8e7c-a31b2b78c91a 4 100488002 100488002 G A SNP ADH1C NM_000669 human genbank 54_36p -1 reviewed silent c.43 p.L15 1 NULL superfamily_GroES-like;HMMPfam_ADH_zinc_N;HMMPfam_ADH_N;superfamily_NAD(P)-binding Rossmann-fold domains - pseudogene ACCN5 51802 genome.wustl.edu 36 4 156994844 156994844 + Missense_Mutation SNP A A T novel Unknown TCGA-24-1417-01A-01W-0549-09 TCGA-24-1417-10A-01W-0549-09 A A A T A A Unknown Valid Somatic 4 Capture Sanger_PCR_WGA 1 dbGAP Illumina GAIIx f6f43d04-a9e3-48c8-a276-3bebcaf416d7 7018df4b-5eed-40c1-8e7c-a31b2b78c91a 4 156994844 156994844 A T SNP ACCN5 NM_017419 human genbank 54_36p -1 reviewed missense c.420 p.H140Q 0.18 NULL - - no_errors FNIP1 96459 genome.wustl.edu 36 5 131042725 131042725 + Missense_Mutation SNP T T G novel Unknown TCGA-24-1417-01A-01W-0549-09 TCGA-24-1417-10A-01W-0549-09 T T Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx f6f43d04-a9e3-48c8-a276-3bebcaf416d7 7018df4b-5eed-40c1-8e7c-a31b2b78c91a 5 131042725 131042725 T G SNP FNIP1 NM_133372 human genbank 54_36p -1 validated missense c.1245 p.E415D 1 NULL - - no_errors LIX1 167410 genome.wustl.edu 36 5 96458274 96458274 + Missense_Mutation SNP C C T novel Unknown TCGA-24-1417-01A-01W-0549-09 TCGA-24-1417-10A-01W-0549-09 C C C T C C Unknown Valid Somatic 4 Capture Sanger_PCR_WGA 1 dbGAP Illumina GAIIx f6f43d04-a9e3-48c8-a276-3bebcaf416d7 7018df4b-5eed-40c1-8e7c-a31b2b78c91a 5 96458274 96458274 C T SNP LIX1 NM_153234 human genbank 54_36p -1 validated missense c.557 p.R186Q 1 NULL - - no_errors ARMC2 84071 genome.wustl.edu 36 6 109304169 109304169 + Missense_Mutation SNP T T A novel Unknown TCGA-24-1417-01A-01W-0549-09 TCGA-24-1417-10A-01W-0549-09 T T Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx f6f43d04-a9e3-48c8-a276-3bebcaf416d7 7018df4b-5eed-40c1-8e7c-a31b2b78c91a 6 109304169 109304169 T A SNP ARMC2 NM_032131 human genbank 54_36p 1 validated missense c.594 p.D198E 0.05 NULL - - no_errors HIVEP1 3096 genome.wustl.edu 36 6 12271558 12271558 + Silent SNP A A C novel Unknown TCGA-24-1417-01A-01W-0549-09 TCGA-24-1417-10A-01W-0549-09 A A Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx f6f43d04-a9e3-48c8-a276-3bebcaf416d7 7018df4b-5eed-40c1-8e7c-a31b2b78c91a 6 12271558 12271558 A C SNP HIVEP1 NM_002114 human genbank 54_36p 1 validated silent c.7035 p.A2345 0 NULL - - no_errors HIST1H2AG 8969 genome.wustl.edu 36 6 27208837 27208837 + Missense_Mutation SNP G G T novel Unknown TCGA-24-1417-01A-01W-0549-09 TCGA-24-1417-10A-01W-0549-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx f6f43d04-a9e3-48c8-a276-3bebcaf416d7 7018df4b-5eed-40c1-8e7c-a31b2b78c91a 6 27208837 27208837 G T SNP HIST1H2AG NM_021064 human genbank 54_36p 1 reviewed missense c.8 p.G3V 1 NULL - - no_errors OR14J1 442191 genome.wustl.edu 36 6 29383386 29383386 + Missense_Mutation SNP G G A novel Unknown TCGA-24-1417-01A-01W-0549-09 TCGA-24-1417-10A-01W-0549-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx f6f43d04-a9e3-48c8-a276-3bebcaf416d7 7018df4b-5eed-40c1-8e7c-a31b2b78c91a 6 29383386 29383386 G A SNP OR14J1 NM_030946 human genbank 54_36p 1 provisional missense c.941 p.C314Y 0 NULL - - no_errors RPP40 10799 genome.wustl.edu 36 6 4944007 4944007 + Nonsense_Mutation SNP C C T novel Unknown TCGA-24-1417-01A-01W-0549-09 TCGA-24-1417-10A-01W-0549-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx f6f43d04-a9e3-48c8-a276-3bebcaf416d7 7018df4b-5eed-40c1-8e7c-a31b2b78c91a 6 4944007 4944007 C T SNP RPP40 NM_006638 human genbank 54_36p -1 validated nonsense c.501 p.W167* 1 NULL - - no_errors ICK 22858 genome.wustl.edu 36 6 52986476 52986476 + Missense_Mutation SNP C C A novel Unknown TCGA-24-1417-01A-01W-0549-09 TCGA-24-1417-10A-01W-0549-09 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx f6f43d04-a9e3-48c8-a276-3bebcaf416d7 7018df4b-5eed-40c1-8e7c-a31b2b78c91a 6 52986476 52986476 C A SNP ICK NM_014920 human genbank 54_36p -1 reviewed missense c.1095 p.Q365H 0.06 NULL HMMPfam_Pkinase;superfamily_Protein kinase-like (PK-like) - no_errors SLC26A3 1811 genome.wustl.edu 36 7 107204215 107204215 + Missense_Mutation SNP G G T novel Unknown TCGA-24-1417-01A-01W-0549-09 TCGA-24-1417-10A-01W-0549-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx f6f43d04-a9e3-48c8-a276-3bebcaf416d7 7018df4b-5eed-40c1-8e7c-a31b2b78c91a 7 107204215 107204215 G T SNP SLC26A3 NM_000111 human genbank 54_36p -1 reviewed missense c.1595 p.P532Q 0.99 NULL - - no_errors ZNF425 155054 genome.wustl.edu 36 7 148432952 148432952 + Missense_Mutation SNP C C T novel Unknown TCGA-24-1417-01A-01W-0549-09 TCGA-24-1417-10A-01W-0549-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx f6f43d04-a9e3-48c8-a276-3bebcaf416d7 7018df4b-5eed-40c1-8e7c-a31b2b78c91a 7 148432952 148432952 C T SNP ZNF425 NM_001001661 human genbank 54_36p -1 provisional missense c.944 p.C315Y 0 HMMPfam_zf-C2H2 HMMPfam_KRAB;HMMPfam_zf-C2H2;superfamily_KRAB domain (Kruppel-associated box Pfam 01352);superfamily_C2H2 and C2HC zinc fingers - no_errors BMPER 168667 genome.wustl.edu 36 7 34159392 34159392 + Silent SNP C C A novel Unknown TCGA-24-1417-01A-01W-0549-09 TCGA-24-1417-10A-01W-0549-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx f6f43d04-a9e3-48c8-a276-3bebcaf416d7 7018df4b-5eed-40c1-8e7c-a31b2b78c91a 7 34159392 34159392 C A SNP BMPER NM_133468 human genbank 54_36p 1 validated silent c.2040 p.V680 0.99 NULL - - no_errors RP1L1 94137 genome.wustl.edu 36 8 10501913 10501913 + Missense_Mutation SNP C C A novel Unknown TCGA-24-1417-01A-01W-0549-09 TCGA-24-1417-10A-01W-0549-09 C C C A C C Unknown Valid Somatic 4 Capture Sanger_PCR_WGA 1 dbGAP Illumina GAIIx f6f43d04-a9e3-48c8-a276-3bebcaf416d7 7018df4b-5eed-40c1-8e7c-a31b2b78c91a 8 10501913 10501913 C A SNP RP1L1 NM_178857 human genbank 54_36p -1 validated missense c.7105 p.G2369C 0 NULL HMMPfam_DCX;HMMPfam_S-antigen;superfamily_Doublecortin (DC) - no_errors ASAP1 50807 genome.wustl.edu 36 8 131250458 131250458 + Nonsense_Mutation SNP T T A novel Unknown TCGA-24-1417-01A-01W-0549-09 TCGA-24-1417-10A-01W-0549-09 T T Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx f6f43d04-a9e3-48c8-a276-3bebcaf416d7 7018df4b-5eed-40c1-8e7c-a31b2b78c91a 8 131250458 131250458 T A SNP ASAP1 NM_018482 human genbank 54_36p -1 validated nonsense c.784 p.K262* 1 NULL HMMPfam_ArfGap;superfamily_Pyk2-associated protein beta ARF-GAP domain;HMMPfam_SH3_1;superfamily_SH3-domain;HMMPfam_PH;HMMPfam_Ank;superfamily_Ankyrin repeat;superfamily_PH domain-like - no_errors ZNF7 7553 genome.wustl.edu 36 8 146033605 146033605 + Silent SNP G G A novel Unknown TCGA-24-1417-01A-01W-0549-09 TCGA-24-1417-10A-01W-0549-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx f6f43d04-a9e3-48c8-a276-3bebcaf416d7 7018df4b-5eed-40c1-8e7c-a31b2b78c91a 8 146033605 146033605 G A SNP ZNF7 NM_003416 human genbank 54_36p 1 validated silent c.156 p.E52 1 NULL - - no_errors MMP16 4325 genome.wustl.edu 36 8 89278518 89278518 + Missense_Mutation SNP T T C novel Unknown TCGA-24-1417-01A-01W-0549-09 TCGA-24-1417-10A-01W-0549-09 T T Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx f6f43d04-a9e3-48c8-a276-3bebcaf416d7 7018df4b-5eed-40c1-8e7c-a31b2b78c91a 8 89278518 89278518 T C SNP MMP16 NM_005941 human genbank 54_36p -1 reviewed missense c.266 p.D89G 1 HMMPfam_PG_binding_1 "HMMPfam_Hemopexin;superfamily_Hemopexin-like domain;HMMPfam_Peptidase_M10;HMMPfam_PG_binding_1;superfamily_PGBD-like;superfamily_Metalloproteases (""zincins"") catalytic domain" - no_errors ENSG00000159247 0 genome.wustl.edu 36 9 140190899 140190899 + Missense_Mutation SNP A A G novel Unknown TCGA-24-1417-01A-01W-0549-09 TCGA-24-1417-10A-01W-0549-09 A A Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx f6f43d04-a9e3-48c8-a276-3bebcaf416d7 7018df4b-5eed-40c1-8e7c-a31b2b78c91a 9 140190899 140190899 A G SNP ENSG00000159247 ENST00000290377 human ensembl 54_36p 1 known missense c.697 p.M233V 1 NULL - - no_start_codon NPR2 4882 genome.wustl.edu 36 9 35795826 35795826 + Splice_Site SNP G G C novel Unknown TCGA-24-1417-01A-01W-0549-09 TCGA-24-1417-10A-01W-0549-09 G G G C G G Unknown Valid Somatic 4 Capture Sanger_PCR_WGA 1 dbGAP Illumina GAIIx f6f43d04-a9e3-48c8-a276-3bebcaf416d7 7018df4b-5eed-40c1-8e7c-a31b2b78c91a 9 35795826 35795826 G C SNP NPR2 NM_003995 human genbank 54_36p 1 reviewed splice_site c.2048-1 e14-1 1 - - - no_errors AFF2 2334 genome.wustl.edu 36 X 147856250 147856250 + Silent SNP T T C novel Unknown TCGA-24-1417-01A-01W-0549-09 TCGA-24-1417-10A-01W-0549-09 T T Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx f6f43d04-a9e3-48c8-a276-3bebcaf416d7 7018df4b-5eed-40c1-8e7c-a31b2b78c91a X 147856250 147856250 T C SNP AFF2 NM_002025 human genbank 54_36p 1 validated silent c.3150 p.L1050 0.01 NULL - - no_errors