Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID LYPLA2 11313 broad.mit.edu 36 1 23993658 23993658 + Missense_Mutation SNP T T C novel none TCGA-24-1466-01A-01W-0545-08 TCGA-24-1466-10A-01W-0545-08 T T C C T T Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 99837df2-4b60-4c4a-b850-c91d739f1950 9b918503-4ad4-47ff-855f-90f92b2c4348 CD1B 910 broad.mit.edu 36 1 156565384 156565384 + Missense_Mutation SNP G G A novel none TCGA-24-1466-01A-01W-0545-08 TCGA-24-1466-10A-01W-0545-08 G G A A G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 99837df2-4b60-4c4a-b850-c91d739f1950 9b918503-4ad4-47ff-855f-90f92b2c4348 DPT 1805 broad.mit.edu 36 1 166950153 166950153 + Missense_Mutation SNP C C G novel none TCGA-24-1466-01A-01W-0545-08 TCGA-24-1466-10A-01W-0545-08 C C G G C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 99837df2-4b60-4c4a-b850-c91d739f1950 9b918503-4ad4-47ff-855f-90f92b2c4348 HMCN1 83872 broad.mit.edu 36 1 184100339 184100339 + Missense_Mutation SNP C C A novel none TCGA-24-1466-01A-01W-0545-08 TCGA-24-1466-10A-01W-0545-08 C C A A C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 99837df2-4b60-4c4a-b850-c91d739f1950 9b918503-4ad4-47ff-855f-90f92b2c4348 DENND1B 163486 broad.mit.edu 36 1 195747698 195747698 + Splice_Site SNP C C T novel none TCGA-24-1466-01A-01W-0545-08 TCGA-24-1466-10A-01W-0545-08 C C T T C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 99837df2-4b60-4c4a-b850-c91d739f1950 9b918503-4ad4-47ff-855f-90f92b2c4348 SUV39H2 79723 broad.mit.edu 36 10 14979166 14979166 + Missense_Mutation SNP C C G novel none TCGA-24-1466-01A-01W-0545-08 TCGA-24-1466-10A-01W-0545-08 C C G G C C Unknown Valid Somatic Phase_I Capture Sequenom;Capture Illumina GAIIx 99837df2-4b60-4c4a-b850-c91d739f1950 9b918503-4ad4-47ff-855f-90f92b2c4348 SORBS1 10580 broad.mit.edu 36 10 97086835 97086835 + Silent SNP T T A novel none TCGA-24-1466-01A-01W-0545-08 TCGA-24-1466-10A-01W-0545-08 T T A A T T Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 99837df2-4b60-4c4a-b850-c91d739f1950 9b918503-4ad4-47ff-855f-90f92b2c4348 CDON 50937 broad.mit.edu 36 11 125398520 125398520 + Missense_Mutation SNP G G C novel none TCGA-24-1466-01A-01W-0545-08 TCGA-24-1466-10A-01W-0545-08 G G C C G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 99837df2-4b60-4c4a-b850-c91d739f1950 9b918503-4ad4-47ff-855f-90f92b2c4348 NECAP1 25977 broad.mit.edu 36 12 8136905 8136905 + Silent SNP A A G novel none TCGA-24-1466-01A-01W-0545-08 TCGA-24-1466-10A-01W-0545-08 A A G G A A Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 99837df2-4b60-4c4a-b850-c91d739f1950 9b918503-4ad4-47ff-855f-90f92b2c4348 SCN8A 6334 broad.mit.edu 36 12 50470514 50470514 + Silent SNP G G C novel none TCGA-24-1466-01A-01W-0545-08 TCGA-24-1466-10A-01W-0545-08 G G C C G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 99837df2-4b60-4c4a-b850-c91d739f1950 9b918503-4ad4-47ff-855f-90f92b2c4348 NBEA 26960 broad.mit.edu 36 13 34513220 34513220 + Missense_Mutation SNP C C T novel none TCGA-24-1466-01A-01W-0545-08 TCGA-24-1466-10A-01W-0545-08 C C T T C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 99837df2-4b60-4c4a-b850-c91d739f1950 9b918503-4ad4-47ff-855f-90f92b2c4348 LRRK1 79705 broad.mit.edu 36 15 99410657 99410657 + Missense_Mutation SNP C C G novel none TCGA-24-1466-01A-01W-0545-08 TCGA-24-1466-10A-01W-0545-08 C C G G C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 99837df2-4b60-4c4a-b850-c91d739f1950 9b918503-4ad4-47ff-855f-90f92b2c4348 PALB2 79728 broad.mit.edu 36 16 23553912 23553912 + Missense_Mutation SNP T T C novel none TCGA-24-1466-01A-01W-0545-08 TCGA-24-1466-10A-01W-0545-08 T T C C T T Unknown Valid Somatic Phase_I Capture 454_PCR_WGA;Capture Illumina GAIIx 99837df2-4b60-4c4a-b850-c91d739f1950 9b918503-4ad4-47ff-855f-90f92b2c4348 SNX20 124460 broad.mit.edu 36 16 49268884 49268884 + Missense_Mutation SNP A A G novel none TCGA-24-1466-01A-01W-0545-08 TCGA-24-1466-10A-01W-0545-08 A A G G A A Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 99837df2-4b60-4c4a-b850-c91d739f1950 9b918503-4ad4-47ff-855f-90f92b2c4348 MMP2 4313 broad.mit.edu 36 16 54081185 54081185 + Silent SNP G G A novel none TCGA-24-1466-01A-01W-0545-08 TCGA-24-1466-10A-01W-0545-08 G G A A G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 99837df2-4b60-4c4a-b850-c91d739f1950 9b918503-4ad4-47ff-855f-90f92b2c4348 TP53 7157 broad.mit.edu 36 17 7518261 7518261 + Missense_Mutation SNP T T C rs67185453 unknown TCGA-24-1466-01A-01W-0545-08 TCGA-24-1466-10A-01W-0545-08 T T C C T T Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 99837df2-4b60-4c4a-b850-c91d739f1950 9b918503-4ad4-47ff-855f-90f92b2c4348 CRKRS 51755 broad.mit.edu 36 17 34929759 34929759 + Missense_Mutation SNP A A T novel none TCGA-24-1466-01A-01W-0545-08 TCGA-24-1466-10A-01W-0545-08 A A T T A A Unknown Valid Somatic Phase_I Capture Sequenom;Capture Illumina GAIIx 99837df2-4b60-4c4a-b850-c91d739f1950 9b918503-4ad4-47ff-855f-90f92b2c4348 DLGAP1 9229 broad.mit.edu 36 18 3869507 3869507 + Missense_Mutation SNP G G A novel none TCGA-24-1466-01A-01W-0545-08 TCGA-24-1466-10A-01W-0545-08 G G A A G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 99837df2-4b60-4c4a-b850-c91d739f1950 9b918503-4ad4-47ff-855f-90f92b2c4348 ZNF536 9745 broad.mit.edu 36 19 35626726 35626726 + Silent SNP C C T novel none TCGA-24-1466-01A-01W-0545-08 TCGA-24-1466-10A-01W-0545-08 C C T T C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 99837df2-4b60-4c4a-b850-c91d739f1950 9b918503-4ad4-47ff-855f-90f92b2c4348 ZSWIM3 140831 broad.mit.edu 36 20 43940621 43940621 + Missense_Mutation SNP C C T novel none TCGA-24-1466-01A-01W-0545-08 TCGA-24-1466-10A-01W-0545-08 C C T T C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 99837df2-4b60-4c4a-b850-c91d739f1950 9b918503-4ad4-47ff-855f-90f92b2c4348 KRTAP10-9 386676 broad.mit.edu 36 21 44872235 44872235 + Missense_Mutation SNP G G A novel none TCGA-24-1466-01A-01W-0545-08 TCGA-24-1466-10A-01W-0545-08 G G A A G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 99837df2-4b60-4c4a-b850-c91d739f1950 9b918503-4ad4-47ff-855f-90f92b2c4348 IQSEC1 9922 broad.mit.edu 36 3 12932152 12932152 + Missense_Mutation SNP T T C novel none TCGA-24-1466-01A-01W-0545-08 TCGA-24-1466-10A-01W-0545-08 T T C C T T Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 99837df2-4b60-4c4a-b850-c91d739f1950 9b918503-4ad4-47ff-855f-90f92b2c4348 SEMA3G 56920 broad.mit.edu 36 3 52447095 52447095 + Missense_Mutation SNP C C T novel none TCGA-24-1466-01A-01W-0545-08 TCGA-24-1466-10A-01W-0545-08 C C T T C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 99837df2-4b60-4c4a-b850-c91d739f1950 9b918503-4ad4-47ff-855f-90f92b2c4348 SI 6476 broad.mit.edu 36 3 166267825 166267825 + Missense_Mutation SNP G G A novel none TCGA-24-1466-01A-01W-0545-08 TCGA-24-1466-10A-01W-0545-08 G G A A G G Unknown Valid Somatic Phase_I Capture Sequenom;Capture;Sequenom Illumina GAIIx 99837df2-4b60-4c4a-b850-c91d739f1950 9b918503-4ad4-47ff-855f-90f92b2c4348 PIGG 54872 broad.mit.edu 36 4 505043 505043 + Missense_Mutation SNP G G A novel none TCGA-24-1466-01A-01W-0545-08 TCGA-24-1466-10A-01W-0545-08 G G A A G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 99837df2-4b60-4c4a-b850-c91d739f1950 9b918503-4ad4-47ff-855f-90f92b2c4348 CDH18 1016 broad.mit.edu 36 5 19519330 19519330 + Silent SNP A A T novel none TCGA-24-1466-01A-01W-0545-08 TCGA-24-1466-10A-01W-0545-08 A A T T A A Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 99837df2-4b60-4c4a-b850-c91d739f1950 9b918503-4ad4-47ff-855f-90f92b2c4348 EPB41L4A 64097 broad.mit.edu 36 5 111532600 111532600 + Missense_Mutation SNP G G A novel none TCGA-24-1466-01A-01W-0545-08 TCGA-24-1466-10A-01W-0545-08 G G A A G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 99837df2-4b60-4c4a-b850-c91d739f1950 9b918503-4ad4-47ff-855f-90f92b2c4348 AFF4 27125 broad.mit.edu 36 5 132298123 132298123 + Missense_Mutation SNP G G C novel none TCGA-24-1466-01A-01W-0545-08 TCGA-24-1466-10A-01W-0545-08 G G C C G G Unknown Valid Somatic Phase_I Capture Capture;Sequenom Illumina GAIIx 99837df2-4b60-4c4a-b850-c91d739f1950 9b918503-4ad4-47ff-855f-90f92b2c4348 GCNT2 2651 broad.mit.edu 36 6 10664686 10664686 + Missense_Mutation SNP G G A rs55786982 unknown TCGA-24-1466-01A-01W-0545-08 TCGA-24-1466-10A-01W-0545-08 G G A A G G Unknown Valid Somatic Phase_I Capture Sequenom;Capture Illumina GAIIx 99837df2-4b60-4c4a-b850-c91d739f1950 9b918503-4ad4-47ff-855f-90f92b2c4348 HIST1H3B 8358 broad.mit.edu 36 6 26139918 26139918 + Missense_Mutation SNP C C T novel none TCGA-24-1466-01A-01W-0545-08 TCGA-24-1466-10A-01W-0545-08 C C T T C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 99837df2-4b60-4c4a-b850-c91d739f1950 9b918503-4ad4-47ff-855f-90f92b2c4348 GPR115 221393 broad.mit.edu 36 6 47788128 47788128 + Missense_Mutation SNP A A G novel none TCGA-24-1466-01A-01W-0545-08 TCGA-24-1466-10A-01W-0545-08 A A G G A A Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 99837df2-4b60-4c4a-b850-c91d739f1950 9b918503-4ad4-47ff-855f-90f92b2c4348 FAM83B 222584 broad.mit.edu 36 6 54912525 54912525 + Missense_Mutation SNP T T C novel none TCGA-24-1466-01A-01W-0545-08 TCGA-24-1466-10A-01W-0545-08 T T C C T T Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 99837df2-4b60-4c4a-b850-c91d739f1950 9b918503-4ad4-47ff-855f-90f92b2c4348 KCNQ5 56479 broad.mit.edu 36 6 73843871 73843871 + Missense_Mutation SNP G G A novel none TCGA-24-1466-01A-01W-0545-08 TCGA-24-1466-10A-01W-0545-08 G G A A G G Unknown Valid Somatic Phase_I Capture Sequenom;Capture Illumina GAIIx 99837df2-4b60-4c4a-b850-c91d739f1950 9b918503-4ad4-47ff-855f-90f92b2c4348 FIGNL1 63979 broad.mit.edu 36 7 50482427 50482427 + Missense_Mutation SNP T T A novel none TCGA-24-1466-01A-01W-0545-08 TCGA-24-1466-10A-01W-0545-08 T T A A T T Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 99837df2-4b60-4c4a-b850-c91d739f1950 9b918503-4ad4-47ff-855f-90f92b2c4348 COBL 23242 broad.mit.edu 36 7 51063831 51063831 + Missense_Mutation SNP T T G novel none TCGA-24-1466-01A-01W-0545-08 TCGA-24-1466-10A-01W-0545-08 T T G G T T Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 99837df2-4b60-4c4a-b850-c91d739f1950 9b918503-4ad4-47ff-855f-90f92b2c4348 AKAP9 10142 broad.mit.edu 36 7 91550465 91550465 + Missense_Mutation SNP G G T novel none TCGA-24-1466-01A-01W-0545-08 TCGA-24-1466-10A-01W-0545-08 G G T T G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 99837df2-4b60-4c4a-b850-c91d739f1950 9b918503-4ad4-47ff-855f-90f92b2c4348 SGCE 8910 broad.mit.edu 36 7 94086198 94086198 + Missense_Mutation SNP G G A novel none TCGA-24-1466-01A-01W-0545-08 TCGA-24-1466-10A-01W-0545-08 G G A A G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 99837df2-4b60-4c4a-b850-c91d739f1950 9b918503-4ad4-47ff-855f-90f92b2c4348 MLL5 55904 broad.mit.edu 36 7 104536839 104536839 + Missense_Mutation SNP C C G novel none TCGA-24-1466-01A-01W-0545-08 TCGA-24-1466-10A-01W-0545-08 C C G G C C Unknown Valid Somatic Phase_I Capture Sequenom;Capture Illumina GAIIx 99837df2-4b60-4c4a-b850-c91d739f1950 9b918503-4ad4-47ff-855f-90f92b2c4348 PCM1 5108 broad.mit.edu 36 8 17857267 17857267 + Missense_Mutation SNP C C G novel none TCGA-24-1466-01A-01W-0545-08 TCGA-24-1466-10A-01W-0545-08 C C G G C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 99837df2-4b60-4c4a-b850-c91d739f1950 9b918503-4ad4-47ff-855f-90f92b2c4348 ZFHX4 79776 broad.mit.edu 36 8 77924389 77924389 + Silent SNP G G T novel none TCGA-24-1466-01A-01W-0545-08 TCGA-24-1466-10A-01W-0545-08 G G T T G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 99837df2-4b60-4c4a-b850-c91d739f1950 9b918503-4ad4-47ff-855f-90f92b2c4348 NDRG1 10397 broad.mit.edu 36 8 134365720 134365720 + Missense_Mutation SNP T T C novel none TCGA-24-1466-01A-01W-0545-08 TCGA-24-1466-10A-01W-0545-08 T T C C T T Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 99837df2-4b60-4c4a-b850-c91d739f1950 9b918503-4ad4-47ff-855f-90f92b2c4348 MPDZ 8777 broad.mit.edu 36 9 13214504 13214504 + Missense_Mutation SNP G G C novel none TCGA-24-1466-01A-01W-0545-08 TCGA-24-1466-10A-01W-0545-08 G G C C G G Unknown Valid Somatic Phase_I Capture Sequenom;Capture Illumina GAIIx 99837df2-4b60-4c4a-b850-c91d739f1950 9b918503-4ad4-47ff-855f-90f92b2c4348 C9orf79 286234 broad.mit.edu 36 9 89691825 89691825 + Missense_Mutation SNP C C T novel none TCGA-24-1466-01A-01W-0545-08 TCGA-24-1466-10A-01W-0545-08 C C T T C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 99837df2-4b60-4c4a-b850-c91d739f1950 9b918503-4ad4-47ff-855f-90f92b2c4348 FRMPD4 9758 broad.mit.edu 36 X 12622478 12622478 + Missense_Mutation SNP A A G novel none TCGA-24-1466-01A-01W-0545-08 TCGA-24-1466-10A-01W-0545-08 A A G G A A Unknown Valid Somatic Phase_I Capture Sequenom;Capture Illumina GAIIx 99837df2-4b60-4c4a-b850-c91d739f1950 9b918503-4ad4-47ff-855f-90f92b2c4348 LAS1L 81887 broad.mit.edu 36 X 64660209 64660209 + Silent SNP G G A novel none TCGA-24-1466-01A-01W-0545-08 TCGA-24-1466-10A-01W-0545-08 G G A A G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 99837df2-4b60-4c4a-b850-c91d739f1950 9b918503-4ad4-47ff-855f-90f92b2c4348 PHKA1 5255 broad.mit.edu 36 X 71781000 71781000 + Missense_Mutation SNP C C A novel none TCGA-24-1466-01A-01W-0545-08 TCGA-24-1466-10A-01W-0545-08 C C A A C C Unknown Valid Somatic Phase_I Capture Sequenom;Capture Illumina GAIIx 99837df2-4b60-4c4a-b850-c91d739f1950 9b918503-4ad4-47ff-855f-90f92b2c4348 NAV1 89796 broad.mit.edu 36 1 200016216 200016219 + Frame_Shift_Del DEL CAGA - CAGA novel none TCGA-24-1466-01A-01W-0545-08 TCGA-24-1466-10A-01W-0545-08 CAGA CAGA - - CAGA CAGA Unknown Valid Somatic Phase_I Capture Illumina_Capture Illumina GAIIx 99837df2-4b60-4c4a-b850-c91d739f1950 9b918503-4ad4-47ff-855f-90f92b2c4348