Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ARHGAP25 9938 hgsc.bcm.edu 36 2 68906740 68906740 + Silent SNP C C T novel TCGA-24-1556-01A-01W-0615-10 TCGA-24-1556-10A-01W-0615-10 C C . . . . Unknown Untested Somatic Phase_III WXS none SOLID e0e27494-cc95-4757-9aaa-de8f12681574 1a200b37-077d-4202-b49d-950903b687cb C20orf70 140683 hgsc.bcm.edu 36 20 31224428 31224428 + Missense_Mutation SNP G G C novel TCGA-24-1556-01A-01W-0615-10 TCGA-24-1556-10A-01W-0615-10 G G . . . . Unknown Untested Somatic Phase_III WXS none SOLID e0e27494-cc95-4757-9aaa-de8f12681574 1a200b37-077d-4202-b49d-950903b687cb COL7A1 1294 hgsc.bcm.edu 36 3 48577600 48577601 + Frame_Shift_Ins INS - - GG novel TCGA-24-1556-01A-01W-0615-10 TCGA-24-1556-10A-01W-0615-10 - - . . . . Unknown Untested Somatic Phase_III WXS none SOLID e0e27494-cc95-4757-9aaa-de8f12681574 1a200b37-077d-4202-b49d-950903b687cb HRNR 388697 hgsc.bcm.edu 36 1 150462353 150462353 + Frame_Shift_Del DEL T T - novel TCGA-24-1556-01A-01W-0615-10 TCGA-24-1556-10A-01W-0615-10 T T . . . . Unknown Untested Somatic Phase_III WXS none SOLID e0e27494-cc95-4757-9aaa-de8f12681574 1a200b37-077d-4202-b49d-950903b687cb IL17RC 84818 hgsc.bcm.edu 36 3 9949300 9949300 + Missense_Mutation SNP A A G novel TCGA-24-1556-01A-01W-0615-10 TCGA-24-1556-10A-01W-0615-10 A A . . . . Unknown Untested Somatic Phase_III WXS none SOLID e0e27494-cc95-4757-9aaa-de8f12681574 1a200b37-077d-4202-b49d-950903b687cb MED13L 23389 hgsc.bcm.edu 36 12 114906387 114906387 + Missense_Mutation SNP T T G novel TCGA-24-1556-01A-01W-0615-10 TCGA-24-1556-10A-01W-0615-10 T T . . . . Unknown Untested Somatic Phase_III WXS none SOLID e0e27494-cc95-4757-9aaa-de8f12681574 1a200b37-077d-4202-b49d-950903b687cb MTOR 2475 hgsc.bcm.edu 36 1 11195520 11195520 + Missense_Mutation SNP G G C novel TCGA-24-1556-01A-01W-0615-10 TCGA-24-1556-10A-01W-0615-10 G G . . . . Unknown Untested Somatic Phase_III WXS none SOLID e0e27494-cc95-4757-9aaa-de8f12681574 1a200b37-077d-4202-b49d-950903b687cb OTUD4 54726 hgsc.bcm.edu 36 4 146312272 146312272 + Missense_Mutation SNP C C A novel TCGA-24-1556-01A-01W-0615-10 TCGA-24-1556-10A-01W-0615-10 C C . . . . Unknown Untested Somatic Phase_III WXS none SOLID e0e27494-cc95-4757-9aaa-de8f12681574 1a200b37-077d-4202-b49d-950903b687cb PDZRN4 29951 hgsc.bcm.edu 36 12 40252443 40252445 + In_Frame_Del DEL AAG AAG - novel TCGA-24-1556-01A-01W-0615-10 TCGA-24-1556-10A-01W-0615-10 AAG AAG . . . . Unknown Untested Somatic Phase_III WXS none SOLID e0e27494-cc95-4757-9aaa-de8f12681574 1a200b37-077d-4202-b49d-950903b687cb PHF19 26147 hgsc.bcm.edu 36 9 122672620 122672620 + Missense_Mutation SNP C C T novel TCGA-24-1556-01A-01W-0615-10 TCGA-24-1556-10A-01W-0615-10 C C . . . . Unknown Untested Somatic Phase_III WXS none SOLID e0e27494-cc95-4757-9aaa-de8f12681574 1a200b37-077d-4202-b49d-950903b687cb POU2F1 5451 hgsc.bcm.edu 36 1 165648050 165648050 + Frame_Shift_Del DEL G G - novel TCGA-24-1556-01A-01W-0615-10 TCGA-24-1556-10A-01W-0615-10 G G . . . . Unknown Untested Somatic Phase_III WXS none SOLID e0e27494-cc95-4757-9aaa-de8f12681574 1a200b37-077d-4202-b49d-950903b687cb QSOX2 169714 hgsc.bcm.edu 36 9 138253546 138253547 + Frame_Shift_Del DEL TT TT - novel TCGA-24-1556-01A-01W-0615-10 TCGA-24-1556-10A-01W-0615-10 TT TT . . . . Unknown Untested Somatic Phase_III WXS none SOLID e0e27494-cc95-4757-9aaa-de8f12681574 1a200b37-077d-4202-b49d-950903b687cb SF1 7536 hgsc.bcm.edu 36 11 64294341 64294341 + Missense_Mutation SNP C C G novel TCGA-24-1556-01A-01W-0615-10 TCGA-24-1556-10A-01W-0615-10 C C . . . . Unknown Untested Somatic Phase_III WXS none SOLID e0e27494-cc95-4757-9aaa-de8f12681574 1a200b37-077d-4202-b49d-950903b687cb SH3BP4 23677 hgsc.bcm.edu 36 2 235614424 235614424 + Missense_Mutation SNP A A T novel TCGA-24-1556-01A-01W-0615-10 TCGA-24-1556-10A-01W-0615-10 A A . . . . Unknown Untested Somatic Phase_III WXS none SOLID e0e27494-cc95-4757-9aaa-de8f12681574 1a200b37-077d-4202-b49d-950903b687cb SYNE2 23224 hgsc.bcm.edu 36 14 63666294 63666294 + Silent SNP C C T novel TCGA-24-1556-01A-01W-0615-10 TCGA-24-1556-10A-01W-0615-10 C C . . . . Unknown Untested Somatic Phase_III WXS none SOLID e0e27494-cc95-4757-9aaa-de8f12681574 1a200b37-077d-4202-b49d-950903b687cb VCL 7414 hgsc.bcm.edu 36 10 75527073 75527073 + Missense_Mutation SNP C C T novel TCGA-24-1556-01A-01W-0615-10 TCGA-24-1556-10A-01W-0615-10 C C . . . . Unknown Untested Somatic Phase_III WXS none SOLID e0e27494-cc95-4757-9aaa-de8f12681574 1a200b37-077d-4202-b49d-950903b687cb VPS33A 65082 hgsc.bcm.edu 36 12 121311781 121311781 + Nonsense_Mutation SNP C C A novel TCGA-24-1556-01A-01W-0615-10 TCGA-24-1556-10A-01W-0615-10 C C . . . . Unknown Untested Somatic Phase_III WXS none SOLID e0e27494-cc95-4757-9aaa-de8f12681574 1a200b37-077d-4202-b49d-950903b687cb WDR49 151790 hgsc.bcm.edu 36 3 168733444 168733444 + Missense_Mutation SNP T T G novel TCGA-24-1556-01A-01W-0615-10 TCGA-24-1556-10A-01W-0615-10 T T . . . . Unknown Untested Somatic Phase_III WXS none SOLID e0e27494-cc95-4757-9aaa-de8f12681574 1a200b37-077d-4202-b49d-950903b687cb ZFYVE26 23503 hgsc.bcm.edu 36 14 67321709 67321709 + Missense_Mutation SNP C C A novel TCGA-24-1556-01A-01W-0615-10 TCGA-24-1556-10A-01W-0615-10 C C . . . . Unknown Untested Somatic Phase_III WXS none SOLID e0e27494-cc95-4757-9aaa-de8f12681574 1a200b37-077d-4202-b49d-950903b687cb ANGPT4 51378 hgsc.bcm.edu 36 20 844772 844772 + Missense_Mutation SNP G G A novel TCGA-24-1556-01A-01W-0615-10 TCGA-24-1556-10A-01W-0615-10 G G G A G G Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID e0e27494-cc95-4757-9aaa-de8f12681574 1a200b37-077d-4202-b49d-950903b687cb ATF7IP2 80063 hgsc.bcm.edu 36 16 10432514 10432514 + Missense_Mutation SNP A A G novel TCGA-24-1556-01A-01W-0615-10 TCGA-24-1556-10A-01W-0615-10 A A A G A A Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID e0e27494-cc95-4757-9aaa-de8f12681574 1a200b37-077d-4202-b49d-950903b687cb CCDC123 84902 hgsc.bcm.edu 36 19 38142646 38142646 + Missense_Mutation SNP C C A novel TCGA-24-1556-01A-01W-0615-10 TCGA-24-1556-10A-01W-0615-10 C C C A C C Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID e0e27494-cc95-4757-9aaa-de8f12681574 1a200b37-077d-4202-b49d-950903b687cb CHD6 84181 hgsc.bcm.edu 36 20 39475435 39475435 + Silent SNP C C G novel TCGA-24-1556-01A-01W-0615-10 TCGA-24-1556-10A-01W-0615-10 C C C G C C Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID e0e27494-cc95-4757-9aaa-de8f12681574 1a200b37-077d-4202-b49d-950903b687cb COMMD9 29099 hgsc.bcm.edu 36 11 36252823 36252823 + Missense_Mutation SNP G G C novel TCGA-24-1556-01A-01W-0615-10 TCGA-24-1556-10A-01W-0615-10 G G G C G G Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID e0e27494-cc95-4757-9aaa-de8f12681574 1a200b37-077d-4202-b49d-950903b687cb CTSL3 392360 hgsc.bcm.edu 36 9 89578282 89578282 + Missense_Mutation SNP A A G novel TCGA-24-1556-01A-01W-0615-10 TCGA-24-1556-10A-01W-0615-10 A A A G A A Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID e0e27494-cc95-4757-9aaa-de8f12681574 1a200b37-077d-4202-b49d-950903b687cb D4S234E 27065 hgsc.bcm.edu 36 4 4444175 4444175 + Missense_Mutation SNP G G C novel TCGA-24-1556-01A-01W-0615-10 TCGA-24-1556-10A-01W-0615-10 G G G C G G Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID e0e27494-cc95-4757-9aaa-de8f12681574 1a200b37-077d-4202-b49d-950903b687cb DDX55 57696 hgsc.bcm.edu 36 12 122656610 122656610 + Missense_Mutation SNP C C G novel TCGA-24-1556-01A-01W-0615-10 TCGA-24-1556-10A-01W-0615-10 C C C G C C Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID e0e27494-cc95-4757-9aaa-de8f12681574 1a200b37-077d-4202-b49d-950903b687cb GREB1 9687 hgsc.bcm.edu 36 2 11633945 11633945 + Missense_Mutation SNP G G T novel TCGA-24-1556-01A-01W-0615-10 TCGA-24-1556-10A-01W-0615-10 G G T T G G Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID e0e27494-cc95-4757-9aaa-de8f12681574 1a200b37-077d-4202-b49d-950903b687cb GSS 2937 hgsc.bcm.edu 36 20 32988441 32988441 + Missense_Mutation SNP C C G novel TCGA-24-1556-01A-01W-0615-10 TCGA-24-1556-10A-01W-0615-10 C C C G C C Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID e0e27494-cc95-4757-9aaa-de8f12681574 1a200b37-077d-4202-b49d-950903b687cb IKBKE 9641 hgsc.bcm.edu 36 1 204724975 204724975 + Silent SNP A A G novel TCGA-24-1556-01A-01W-0615-10 TCGA-24-1556-10A-01W-0615-10 A A G G A A Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID e0e27494-cc95-4757-9aaa-de8f12681574 1a200b37-077d-4202-b49d-950903b687cb NR1I2 8856 hgsc.bcm.edu 36 3 121014352 121014352 + Missense_Mutation SNP G G T novel TCGA-24-1556-01A-01W-0615-10 TCGA-24-1556-10A-01W-0615-10 G G G T G G Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID e0e27494-cc95-4757-9aaa-de8f12681574 1a200b37-077d-4202-b49d-950903b687cb NRAP 4892 hgsc.bcm.edu 36 10 115413581 115413581 + Silent SNP C C T novel TCGA-24-1556-01A-01W-0615-10 TCGA-24-1556-10A-01W-0615-10 C C C T C C Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID e0e27494-cc95-4757-9aaa-de8f12681574 1a200b37-077d-4202-b49d-950903b687cb PMS1 5378 hgsc.bcm.edu 36 2 190416992 190416992 + Silent SNP C C T novel TCGA-24-1556-01A-01W-0615-10 TCGA-24-1556-10A-01W-0615-10 C C C T C C Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID e0e27494-cc95-4757-9aaa-de8f12681574 1a200b37-077d-4202-b49d-950903b687cb PRRG3 79057 hgsc.bcm.edu 36 X 150619985 150619985 + Missense_Mutation SNP A A T novel TCGA-24-1556-01A-01W-0615-10 TCGA-24-1556-10A-01W-0615-10 A A A T A A Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID e0e27494-cc95-4757-9aaa-de8f12681574 1a200b37-077d-4202-b49d-950903b687cb RNF220 55182 hgsc.bcm.edu 36 1 44650948 44650948 + Missense_Mutation SNP G G T novel TCGA-24-1556-01A-01W-0615-10 TCGA-24-1556-10A-01W-0615-10 G G G T G G Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID e0e27494-cc95-4757-9aaa-de8f12681574 1a200b37-077d-4202-b49d-950903b687cb SIN3B 23309 hgsc.bcm.edu 36 19 16813586 16813586 + Missense_Mutation SNP C C T novel TCGA-24-1556-01A-01W-0615-10 TCGA-24-1556-10A-01W-0615-10 C C C T C C Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID e0e27494-cc95-4757-9aaa-de8f12681574 1a200b37-077d-4202-b49d-950903b687cb TUFM 7284 hgsc.bcm.edu 36 16 28763585 28763585 + Missense_Mutation SNP T T G novel TCGA-24-1556-01A-01W-0615-10 TCGA-24-1556-10A-01W-0615-10 T T T G T T Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID e0e27494-cc95-4757-9aaa-de8f12681574 1a200b37-077d-4202-b49d-950903b687cb ADAMTSL3 57188 hgsc.bcm.edu 36 15 82442881 82442881 + Missense_Mutation SNP A A T novel TCGA-24-1556-01A-01W-0615-10 TCGA-24-1556-10A-01W-0615-10 A A A T A A Unknown Valid Somatic Phase_III WXS Sanger_PCR_WGA SOLID e0e27494-cc95-4757-9aaa-de8f12681574 1a200b37-077d-4202-b49d-950903b687cb C10orf141 642938 hgsc.bcm.edu 36 10 128864305 128864305 + Nonsense_Mutation SNP G G T novel TCGA-24-1556-01A-01W-0615-10 TCGA-24-1556-10A-01W-0615-10 G G G T G G Unknown Valid Somatic Phase_III WXS Sanger_PCR_WGA SOLID e0e27494-cc95-4757-9aaa-de8f12681574 1a200b37-077d-4202-b49d-950903b687cb C4orf8 8603 hgsc.bcm.edu 36 4 2666651 2666651 + Silent SNP C C A novel TCGA-24-1556-01A-01W-0615-10 TCGA-24-1556-10A-01W-0615-10 C C C A C C Unknown Valid Somatic Phase_III WXS Sanger_PCR_WGA SOLID e0e27494-cc95-4757-9aaa-de8f12681574 1a200b37-077d-4202-b49d-950903b687cb C6orf134 79969 hgsc.bcm.edu 36 6 30717948 30717948 + Silent SNP G G A novel TCGA-24-1556-01A-01W-0615-10 TCGA-24-1556-10A-01W-0615-10 G G G A G G Unknown Valid Somatic Phase_III WXS Sanger_PCR_WGA SOLID e0e27494-cc95-4757-9aaa-de8f12681574 1a200b37-077d-4202-b49d-950903b687cb EPB41L3 23136 hgsc.bcm.edu 36 18 5406037 5406037 + Missense_Mutation SNP A A T novel TCGA-24-1556-01A-01W-0615-10 TCGA-24-1556-10A-01W-0615-10 A A A T A A Unknown Valid Somatic Phase_III WXS Sanger_PCR_WGA SOLID e0e27494-cc95-4757-9aaa-de8f12681574 1a200b37-077d-4202-b49d-950903b687cb EPHA3 2042 hgsc.bcm.edu 36 3 89582131 89582131 + Missense_Mutation SNP T T G novel TCGA-24-1556-01A-01W-0615-10 TCGA-24-1556-10A-01W-0615-10 T T T G T T Unknown Valid Somatic Phase_III WXS Sanger_PCR_WGA SOLID e0e27494-cc95-4757-9aaa-de8f12681574 1a200b37-077d-4202-b49d-950903b687cb FAT2 2196 hgsc.bcm.edu 36 5 150903283 150903283 + Missense_Mutation SNP G G C novel TCGA-24-1556-01A-01W-0615-10 TCGA-24-1556-10A-01W-0615-10 G G G C G G Unknown Valid Somatic Phase_III WXS Sanger_PCR_WGA SOLID e0e27494-cc95-4757-9aaa-de8f12681574 1a200b37-077d-4202-b49d-950903b687cb HMG20A 10363 hgsc.bcm.edu 36 15 75550436 75550436 + Nonsense_Mutation SNP C C T novel TCGA-24-1556-01A-01W-0615-10 TCGA-24-1556-10A-01W-0615-10 C C C T C C Unknown Valid Somatic Phase_III WXS Sanger_PCR_WGA SOLID e0e27494-cc95-4757-9aaa-de8f12681574 1a200b37-077d-4202-b49d-950903b687cb KIAA0323 23351 hgsc.bcm.edu 36 14 23971894 23971894 + Silent SNP C C T novel TCGA-24-1556-01A-01W-0615-10 TCGA-24-1556-10A-01W-0615-10 C C C T C C Unknown Valid Somatic Phase_III WXS Sanger_PCR_WGA SOLID e0e27494-cc95-4757-9aaa-de8f12681574 1a200b37-077d-4202-b49d-950903b687cb KIAA1409 57578 hgsc.bcm.edu 36 14 93129916 93129916 + Nonsense_Mutation SNP G G A novel TCGA-24-1556-01A-01W-0615-10 TCGA-24-1556-10A-01W-0615-10 G G G A G G Unknown Valid Somatic Phase_III WXS Sanger_PCR_WGA SOLID e0e27494-cc95-4757-9aaa-de8f12681574 1a200b37-077d-4202-b49d-950903b687cb MACF1 23499 hgsc.bcm.edu 36 1 39668235 39668235 + Missense_Mutation SNP G G C novel TCGA-24-1556-01A-01W-0615-10 TCGA-24-1556-10A-01W-0615-10 G G G C G G Unknown Valid Somatic Phase_III WXS Sanger_PCR_WGA SOLID e0e27494-cc95-4757-9aaa-de8f12681574 1a200b37-077d-4202-b49d-950903b687cb MYH1 4619 hgsc.bcm.edu 36 17 10352551 10352551 + Missense_Mutation SNP T T A novel TCGA-24-1556-01A-01W-0615-10 TCGA-24-1556-10A-01W-0615-10 T T T A T T Unknown Valid Somatic Phase_III WXS Sanger_PCR_WGA SOLID e0e27494-cc95-4757-9aaa-de8f12681574 1a200b37-077d-4202-b49d-950903b687cb SLC6A2 6530 hgsc.bcm.edu 36 16 54263578 54263578 + Nonsense_Mutation SNP G G T novel TCGA-24-1556-01A-01W-0615-10 TCGA-24-1556-10A-01W-0615-10 G G G T G G Unknown Valid Somatic Phase_III WXS Sanger_PCR_WGA SOLID e0e27494-cc95-4757-9aaa-de8f12681574 1a200b37-077d-4202-b49d-950903b687cb SYNE1 23345 hgsc.bcm.edu 36 6 152739225 152739225 + Missense_Mutation SNP C C A novel TCGA-24-1556-01A-01W-0615-10 TCGA-24-1556-10A-01W-0615-10 C C C A C C Unknown Valid Somatic Phase_III WXS Sanger_PCR_WGA SOLID e0e27494-cc95-4757-9aaa-de8f12681574 1a200b37-077d-4202-b49d-950903b687cb TGFBR2 7048 hgsc.bcm.edu 36 3 30688465 30688465 + Missense_Mutation SNP G G C novel TCGA-24-1556-01A-01W-0615-10 TCGA-24-1556-10A-01W-0615-10 G G G C G G Unknown Valid Somatic Phase_III WXS Sanger_PCR_WGA SOLID e0e27494-cc95-4757-9aaa-de8f12681574 1a200b37-077d-4202-b49d-950903b687cb TNFRSF10A 8797 hgsc.bcm.edu 36 8 23105437 23105437 + Silent SNP G G T novel TCGA-24-1556-01A-01W-0615-10 TCGA-24-1556-10A-01W-0615-10 G G G T G G Unknown Valid Somatic Phase_III WXS Sanger_PCR_WGA SOLID e0e27494-cc95-4757-9aaa-de8f12681574 1a200b37-077d-4202-b49d-950903b687cb TP53 7157 hgsc.bcm.edu 36 17 7517652 7517652 + Splice_Site SNP C C T novel TCGA-24-1556-01A-01W-0615-10 TCGA-24-1556-10A-01W-0615-10 C C T T C C Unknown Valid Somatic Phase_III WXS Sanger_PCR_WGA SOLID e0e27494-cc95-4757-9aaa-de8f12681574 1a200b37-077d-4202-b49d-950903b687cb VAV1 7409 hgsc.bcm.edu 36 19 6779827 6779827 + Missense_Mutation SNP A A G novel TCGA-24-1556-01A-01W-0615-10 TCGA-24-1556-10A-01W-0615-10 A A A G A A Unknown Valid Somatic Phase_III WXS Sanger_PCR_WGA SOLID e0e27494-cc95-4757-9aaa-de8f12681574 1a200b37-077d-4202-b49d-950903b687cb