Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID C9orf96 169436 hgsc.bcm.edu 36 9 135255456 135255456 + Frame_Shift_Del DEL G G - novel TCGA-25-1324-01A-01W-0490-10 TCGA-25-1324-10A-01W-0490-10 G G . . . . Unknown Untested Somatic Phase_IV WXS none SOLID 39169cdc-53c2-4767-836b-037e00949213 a4c924a3-8301-4d32-be95-7d4796e1dd55 CAD 790 hgsc.bcm.edu 36 2 27312788 27312788 + Missense_Mutation SNP C C T novel TCGA-25-1324-01A-01W-0490-10 TCGA-25-1324-10A-01W-0490-10 C C . . . . Unknown Untested Somatic Phase_IV WXS none SOLID 39169cdc-53c2-4767-836b-037e00949213 a4c924a3-8301-4d32-be95-7d4796e1dd55 FAAH 2166 hgsc.bcm.edu 36 1 46644311 46644311 + Missense_Mutation SNP A A T novel TCGA-25-1324-01A-01W-0490-10 TCGA-25-1324-10A-01W-0490-10 A A . . . . Unknown Untested Somatic Phase_IV WXS none SOLID 39169cdc-53c2-4767-836b-037e00949213 a4c924a3-8301-4d32-be95-7d4796e1dd55 GPR162 27239 hgsc.bcm.edu 36 12 6804977 6804977 + Missense_Mutation SNP G G A novel TCGA-25-1324-01A-01W-0490-10 TCGA-25-1324-10A-01W-0490-10 G G . . . . Unknown Untested Somatic Phase_IV WXS none SOLID 39169cdc-53c2-4767-836b-037e00949213 a4c924a3-8301-4d32-be95-7d4796e1dd55 GPR50 9248 hgsc.bcm.edu 36 X 150100216 150100227 + In_Frame_Del DEL CACCACTGGCCA CACCACTGGCCA - novel TCGA-25-1324-01A-01W-0490-10 TCGA-25-1324-10A-01W-0490-10 CACCACTGGCCA CACCACTGGCCA . . . . Unknown Untested Somatic Phase_IV WXS none SOLID 39169cdc-53c2-4767-836b-037e00949213 a4c924a3-8301-4d32-be95-7d4796e1dd55 GRTP1 79774 hgsc.bcm.edu 36 13 113057664 113057664 + Silent SNP G G A novel TCGA-25-1324-01A-01W-0490-10 TCGA-25-1324-10A-01W-0490-10 G G . . . . Unknown Untested Somatic Phase_IV WXS none SOLID 39169cdc-53c2-4767-836b-037e00949213 a4c924a3-8301-4d32-be95-7d4796e1dd55 KCNA5 3741 hgsc.bcm.edu 36 12 5024994 5024995 + Frame_Shift_Del DEL GC GC - novel TCGA-25-1324-01A-01W-0490-10 TCGA-25-1324-10A-01W-0490-10 GC GC . . . . Unknown Untested Somatic Phase_IV WXS none SOLID 39169cdc-53c2-4767-836b-037e00949213 a4c924a3-8301-4d32-be95-7d4796e1dd55 KNTC1 9735 hgsc.bcm.edu 36 12 121623725 121623726 + Frame_Shift_Del DEL AA AA - novel TCGA-25-1324-01A-01W-0490-10 TCGA-25-1324-10A-01W-0490-10 AA AA . . . . Unknown Untested Somatic Phase_IV WXS none SOLID 39169cdc-53c2-4767-836b-037e00949213 a4c924a3-8301-4d32-be95-7d4796e1dd55 MFSD11 79157 hgsc.bcm.edu 36 17 72275062 72275062 + Splice_Site SNP G G C novel TCGA-25-1324-01A-01W-0490-10 TCGA-25-1324-10A-01W-0490-10 G G . . . . Unknown Untested Somatic Phase_IV WXS none SOLID 39169cdc-53c2-4767-836b-037e00949213 a4c924a3-8301-4d32-be95-7d4796e1dd55 MTMR3 8897 hgsc.bcm.edu 36 22 28746336 28746338 + In_Frame_Del DEL GTC GTC - novel TCGA-25-1324-01A-01W-0490-10 TCGA-25-1324-10A-01W-0490-10 GTC GTC . . . . Unknown Untested Somatic Phase_IV WXS none SOLID 39169cdc-53c2-4767-836b-037e00949213 a4c924a3-8301-4d32-be95-7d4796e1dd55 PDGFRB 5159 hgsc.bcm.edu 36 5 149492605 149492605 + Missense_Mutation SNP T T G novel TCGA-25-1324-01A-01W-0490-10 TCGA-25-1324-10A-01W-0490-10 T T . . . . Unknown Untested Somatic Phase_IV WXS none SOLID 39169cdc-53c2-4767-836b-037e00949213 a4c924a3-8301-4d32-be95-7d4796e1dd55 RILP 83547 hgsc.bcm.edu 36 17 1498504 1498504 + Missense_Mutation SNP C C G novel TCGA-25-1324-01A-01W-0490-10 TCGA-25-1324-10A-01W-0490-10 C C . . . . Unknown Untested Somatic Phase_IV WXS none SOLID 39169cdc-53c2-4767-836b-037e00949213 a4c924a3-8301-4d32-be95-7d4796e1dd55 RP1L1 94137 hgsc.bcm.edu 36 8 10501886 10501886 + Missense_Mutation SNP G G C novel TCGA-25-1324-01A-01W-0490-10 TCGA-25-1324-10A-01W-0490-10 G G . . . . Unknown Untested Somatic Phase_IV WXS none SOLID 39169cdc-53c2-4767-836b-037e00949213 a4c924a3-8301-4d32-be95-7d4796e1dd55 RPA1 6117 hgsc.bcm.edu 36 17 1733866 1733866 + Frame_Shift_Del DEL G G - novel TCGA-25-1324-01A-01W-0490-10 TCGA-25-1324-10A-01W-0490-10 G G . . . . Unknown Untested Somatic Phase_IV WXS none SOLID 39169cdc-53c2-4767-836b-037e00949213 a4c924a3-8301-4d32-be95-7d4796e1dd55 ZC3H3 23144 hgsc.bcm.edu 36 8 144661192 144661192 + Missense_Mutation SNP G G A novel TCGA-25-1324-01A-01W-0490-10 TCGA-25-1324-10A-01W-0490-10 G G . . . . Unknown Untested Somatic Phase_IV WXS none SOLID 39169cdc-53c2-4767-836b-037e00949213 a4c924a3-8301-4d32-be95-7d4796e1dd55 ZC3H7B 23264 hgsc.bcm.edu 36 22 40065092 40065092 + Nonsense_Mutation SNP C C G novel TCGA-25-1324-01A-01W-0490-10 TCGA-25-1324-10A-01W-0490-10 C C . . . . Unknown Untested Somatic Phase_IV WXS none SOLID 39169cdc-53c2-4767-836b-037e00949213 a4c924a3-8301-4d32-be95-7d4796e1dd55 ZCWPW1 55063 hgsc.bcm.edu 36 7 99852628 99852628 + Missense_Mutation SNP T T G novel TCGA-25-1324-01A-01W-0490-10 TCGA-25-1324-10A-01W-0490-10 T T . . . . Unknown Untested Somatic Phase_IV WXS none SOLID 39169cdc-53c2-4767-836b-037e00949213 a4c924a3-8301-4d32-be95-7d4796e1dd55 ZFHX4 79776 hgsc.bcm.edu 36 8 77780767 77780767 + Missense_Mutation SNP G G T novel TCGA-25-1324-01A-01W-0490-10 TCGA-25-1324-10A-01W-0490-10 G G . . . . Unknown Untested Somatic Phase_IV WXS none SOLID 39169cdc-53c2-4767-836b-037e00949213 a4c924a3-8301-4d32-be95-7d4796e1dd55 ZNF295 49854 hgsc.bcm.edu 36 21 42284620 42284620 + Missense_Mutation SNP T T G novel TCGA-25-1324-01A-01W-0490-10 TCGA-25-1324-10A-01W-0490-10 T T . . . . Unknown Untested Somatic Phase_IV WXS none SOLID 39169cdc-53c2-4767-836b-037e00949213 a4c924a3-8301-4d32-be95-7d4796e1dd55 ATP8B4 79895 hgsc.bcm.edu 36 15 48010714 48010714 + Silent SNP G G A novel TCGA-25-1324-01A-01W-0490-10 TCGA-25-1324-10A-01W-0490-10 G G G A G G Unknown Valid Somatic Phase_IV WXS 454_PCR_WGA SOLID 39169cdc-53c2-4767-836b-037e00949213 a4c924a3-8301-4d32-be95-7d4796e1dd55 C7orf53 286006 hgsc.bcm.edu 36 7 111914312 111914312 + Missense_Mutation SNP G G A novel TCGA-25-1324-01A-01W-0490-10 TCGA-25-1324-10A-01W-0490-10 G G G A G G Unknown Valid Somatic Phase_IV WXS 454_PCR_WGA SOLID 39169cdc-53c2-4767-836b-037e00949213 a4c924a3-8301-4d32-be95-7d4796e1dd55 DPP4 1803 hgsc.bcm.edu 36 2 162560109 162560109 + Missense_Mutation SNP C C A novel TCGA-25-1324-01A-01W-0490-10 TCGA-25-1324-10A-01W-0490-10 C C C A C C Unknown Valid Somatic Phase_IV WXS 454_PCR_WGA SOLID 39169cdc-53c2-4767-836b-037e00949213 a4c924a3-8301-4d32-be95-7d4796e1dd55 EBF4 57593 hgsc.bcm.edu 36 20 2634893 2634893 + Missense_Mutation SNP G G A novel TCGA-25-1324-01A-01W-0490-10 TCGA-25-1324-10A-01W-0490-10 G G G A G G Unknown Valid Somatic Phase_IV WXS 454_PCR_WGA SOLID 39169cdc-53c2-4767-836b-037e00949213 a4c924a3-8301-4d32-be95-7d4796e1dd55 GABRA6 2559 hgsc.bcm.edu 36 5 161061315 161061315 + Silent SNP T T C novel TCGA-25-1324-01A-01W-0490-10 TCGA-25-1324-10A-01W-0490-10 T T T C T T Unknown Valid Somatic Phase_IV WXS 454_PCR_WGA SOLID 39169cdc-53c2-4767-836b-037e00949213 a4c924a3-8301-4d32-be95-7d4796e1dd55 GK2 2712 hgsc.bcm.edu 36 4 80547003 80547003 + Missense_Mutation SNP G G T novel TCGA-25-1324-01A-01W-0490-10 TCGA-25-1324-10A-01W-0490-10 G G G T G G Unknown Valid Somatic Phase_IV WXS 454_PCR_WGA SOLID 39169cdc-53c2-4767-836b-037e00949213 a4c924a3-8301-4d32-be95-7d4796e1dd55 GREB1 9687 hgsc.bcm.edu 36 2 11695321 11695321 + Missense_Mutation SNP C C T novel TCGA-25-1324-01A-01W-0490-10 TCGA-25-1324-10A-01W-0490-10 C C C T C C Unknown Valid Somatic Phase_IV WXS 454_PCR_WGA SOLID 39169cdc-53c2-4767-836b-037e00949213 a4c924a3-8301-4d32-be95-7d4796e1dd55 KIAA1529 57653 hgsc.bcm.edu 36 9 99111666 99111666 + Missense_Mutation SNP C C A novel TCGA-25-1324-01A-01W-0490-10 TCGA-25-1324-10A-01W-0490-10 C C C A C C Unknown Valid Somatic Phase_IV WXS 454_PCR_WGA SOLID 39169cdc-53c2-4767-836b-037e00949213 a4c924a3-8301-4d32-be95-7d4796e1dd55 KIR2DL4 3805 hgsc.bcm.edu 36 19 60006956 60006956 + Missense_Mutation SNP T T A novel TCGA-25-1324-01A-01W-0490-10 TCGA-25-1324-10A-01W-0490-10 T T T A T T Unknown Valid Somatic Phase_IV WXS 454_PCR_WGA SOLID 39169cdc-53c2-4767-836b-037e00949213 a4c924a3-8301-4d32-be95-7d4796e1dd55 KIR3DL3 115653 hgsc.bcm.edu 36 19 59931054 59931054 + Missense_Mutation SNP C C T novel TCGA-25-1324-01A-01W-0490-10 TCGA-25-1324-10A-01W-0490-10 C C C T C C Unknown Valid Somatic Phase_IV WXS 454_PCR_WGA SOLID 39169cdc-53c2-4767-836b-037e00949213 a4c924a3-8301-4d32-be95-7d4796e1dd55 MORC3 23515 hgsc.bcm.edu 36 21 36666647 36666647 + Missense_Mutation SNP G G A novel TCGA-25-1324-01A-01W-0490-10 TCGA-25-1324-10A-01W-0490-10 G G G A G G Unknown Valid Somatic Phase_IV WXS 454_PCR_WGA SOLID 39169cdc-53c2-4767-836b-037e00949213 a4c924a3-8301-4d32-be95-7d4796e1dd55 PTPRE 5791 hgsc.bcm.edu 36 10 129761617 129761617 + Silent SNP C C T novel TCGA-25-1324-01A-01W-0490-10 TCGA-25-1324-10A-01W-0490-10 C C C T C C Unknown Valid Somatic Phase_IV WXS 454_PCR_WGA SOLID 39169cdc-53c2-4767-836b-037e00949213 a4c924a3-8301-4d32-be95-7d4796e1dd55 TFCP2L1 29842 hgsc.bcm.edu 36 2 121755283 121755283 + Missense_Mutation SNP C C T novel TCGA-25-1324-01A-01W-0490-10 TCGA-25-1324-10A-01W-0490-10 C C C T C C Unknown Valid Somatic Phase_IV WXS 454_PCR_WGA SOLID 39169cdc-53c2-4767-836b-037e00949213 a4c924a3-8301-4d32-be95-7d4796e1dd55 UBE2M 9040 hgsc.bcm.edu 36 19 63759885 63759885 + Missense_Mutation SNP C C T novel TCGA-25-1324-01A-01W-0490-10 TCGA-25-1324-10A-01W-0490-10 C C C T C C Unknown Valid Somatic Phase_IV WXS 454_PCR_WGA SOLID 39169cdc-53c2-4767-836b-037e00949213 a4c924a3-8301-4d32-be95-7d4796e1dd55 WDR63 126820 hgsc.bcm.edu 36 1 85336824 85336824 + Missense_Mutation SNP G G C novel TCGA-25-1324-01A-01W-0490-10 TCGA-25-1324-10A-01W-0490-10 G G G C G G Unknown Valid Somatic Phase_IV WXS 454_PCR_WGA SOLID 39169cdc-53c2-4767-836b-037e00949213 a4c924a3-8301-4d32-be95-7d4796e1dd55 ZBTB7C 201501 hgsc.bcm.edu 36 18 43821394 43821394 + Missense_Mutation SNP C C T novel TCGA-25-1324-01A-01W-0490-10 TCGA-25-1324-10A-01W-0490-10 C C C T C C Unknown Valid Somatic Phase_IV WXS 454_PCR_WGA SOLID 39169cdc-53c2-4767-836b-037e00949213 a4c924a3-8301-4d32-be95-7d4796e1dd55 BIRC6 57448 hgsc.bcm.edu 36 2 32546564 32546564 + Nonsense_Mutation SNP G G A novel TCGA-25-1324-01A-01W-0490-10 TCGA-25-1324-10A-01W-0490-10 G G G A G G Unknown Valid Somatic Phase_IV WXS Sanger_PCR_WGA SOLID 39169cdc-53c2-4767-836b-037e00949213 a4c924a3-8301-4d32-be95-7d4796e1dd55 MGA 23269 hgsc.bcm.edu 36 15 39839925 39839925 + Missense_Mutation SNP G G A novel TCGA-25-1324-01A-01W-0490-10 TCGA-25-1324-10A-01W-0490-10 G G G A G G Unknown Valid Somatic Phase_IV WXS Sanger_PCR_WGA SOLID 39169cdc-53c2-4767-836b-037e00949213 a4c924a3-8301-4d32-be95-7d4796e1dd55 MTTP 4547 hgsc.bcm.edu 36 4 100759232 100759232 + Nonsense_Mutation SNP G G T novel TCGA-25-1324-01A-01W-0490-10 TCGA-25-1324-10A-01W-0490-10 G G T T G G Unknown Valid Somatic Phase_IV WXS Sanger_PCR_WGA SOLID 39169cdc-53c2-4767-836b-037e00949213 a4c924a3-8301-4d32-be95-7d4796e1dd55 PCDH20 64881 hgsc.bcm.edu 36 13 60885447 60885447 + Missense_Mutation SNP C C A novel TCGA-25-1324-01A-01W-0490-10 TCGA-25-1324-10A-01W-0490-10 C C C A C C Unknown Valid Somatic Phase_IV WXS Sanger_PCR_WGA SOLID 39169cdc-53c2-4767-836b-037e00949213 a4c924a3-8301-4d32-be95-7d4796e1dd55 RELN 5649 hgsc.bcm.edu 36 7 102911424 102911424 + Missense_Mutation SNP C C T novel TCGA-25-1324-01A-01W-0490-10 TCGA-25-1324-10A-01W-0490-10 C C C T C C Unknown Valid Somatic Phase_IV WXS Sanger_PCR_WGA SOLID 39169cdc-53c2-4767-836b-037e00949213 a4c924a3-8301-4d32-be95-7d4796e1dd55 SERPINA6 866 hgsc.bcm.edu 36 14 93850271 93850271 + Missense_Mutation SNP C C G novel TCGA-25-1324-01A-01W-0490-10 TCGA-25-1324-10A-01W-0490-10 C C C G C C Unknown Valid Somatic Phase_IV WXS Sanger_PCR_WGA SOLID 39169cdc-53c2-4767-836b-037e00949213 a4c924a3-8301-4d32-be95-7d4796e1dd55 TP53 7157 hgsc.bcm.edu 36 17 7519280 7519280 + Splice_Site SNP C C T novel TCGA-25-1324-01A-01W-0490-10 TCGA-25-1324-10A-01W-0490-10 C C T T C C Unknown Valid Somatic Phase_IV WXS Sanger_PCR_WGA SOLID 39169cdc-53c2-4767-836b-037e00949213 a4c924a3-8301-4d32-be95-7d4796e1dd55