Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID chromosome_name start stop reference variant type gene_name transcript_name transcript_species transcript_source transcript_version strand transcript_status trv_type c_position amino_acid_change ucsc_cons domain all_domains deletion_substructures transcript_error RPL3L 6123 genome.wustl.edu 36 16 1942995 1942995 + Silent SNP C C T novel unknown TCGA-29-1710-01A-02W-0633-09 TCGA-29-1710-10A-01W-0633-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx be957b7d-5bc0-4e26-8219-b8082b200f93 6b10bb23-a9a0-4021-a0d4-e05f0ed727ba 16 1942995 1942995 C T SNP RPL3L NM_005061 human genbank 54_36p -1 reviewed silent c.246 p.P82 0.497 superfamily_Translat_factor,HMMPfam_Ribosomal_L3 superfamily_Translat_factor,HMMPfam_Ribosomal_L3,PatternScan_RIBOSOMAL_L3 - no_errors ARSF 416 genome.wustl.edu 36 X 3040320 3040320 + Missense_Mutation SNP C C A novel unknown TCGA-29-1710-01A-02W-0633-09 TCGA-29-1710-10A-01W-0633-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx be957b7d-5bc0-4e26-8219-b8082b200f93 6b10bb23-a9a0-4021-a0d4-e05f0ed727ba X 3040320 3040320 C A SNP ARSF NM_004042 human genbank 54_36p +1 reviewed missense c.1496 p.T499N 0.890 superfamily_Alkaline phosphatase-like,HMMPfam_Sulfatase superfamily_Alkaline phosphatase-like,HMMPfam_Sulfatase,PatternScan_SULFATASE_1,PatternScan_SULFATASE_2 - no_errors ANO2 57101 genome.wustl.edu 36 12 5579037 5579037 + Nonsense_Mutation SNP G G A novel unknown TCGA-29-1710-01A-02W-0633-09 TCGA-29-1710-10A-01W-0633-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx be957b7d-5bc0-4e26-8219-b8082b200f93 6b10bb23-a9a0-4021-a0d4-e05f0ed727ba 12 5579037 5579037 G A SNP ANO2 NM_020373 human genbank 54_36p -1 validated nonsense c.2110 p.R704* 1.000 HMMPfam_DUF590 HMMPfam_DUF590 - no_errors TP53 7157 genome.wustl.edu 36 17 7518990 7518990 + Missense_Mutation SNP A A G novel unknown TCGA-29-1710-01A-02W-0633-09 TCGA-29-1710-10A-01W-0633-09 A A Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx be957b7d-5bc0-4e26-8219-b8082b200f93 6b10bb23-a9a0-4021-a0d4-e05f0ed727ba 17 7518990 7518990 A G SNP TP53 NM_000546 human genbank 54_36p -1 reviewed missense c.584 p.I195T 1.000 HMMPfam_P53,superfamily_p53-like transcription factors HMMPfam_P53_TAD,HMMPfam_P53,superfamily_p53-like transcription factors,PatternScan_P53,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain - no_errors MYH8 4626 genome.wustl.edu 36 17 10264181 10264181 + Missense_Mutation SNP T T G novel unknown TCGA-29-1710-01A-02W-0633-09 TCGA-29-1710-10A-01W-0633-09 T T Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx be957b7d-5bc0-4e26-8219-b8082b200f93 6b10bb23-a9a0-4021-a0d4-e05f0ed727ba 17 10264181 10264181 T G SNP MYH8 NM_002472 human genbank 54_36p -1 validated missense c.89 p.Q30P 1.000 NULL HMMPfam_Myosin_N,superfamily_SSF52540,HMMSmart_MYSc,HMMPfam_Myosin_head,HMMSmart_IQ,HMMPfam_IQ,HMMPfam_Myosin_tail_1 - no_errors ILF3 3609 genome.wustl.edu 36 19 10659362 10659362 + Missense_Mutation SNP C C A novel unknown TCGA-29-1710-01A-02W-0633-09 TCGA-29-1710-10A-01W-0633-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx be957b7d-5bc0-4e26-8219-b8082b200f93 6b10bb23-a9a0-4021-a0d4-e05f0ed727ba 19 10659362 10659362 C A SNP ILF3 NM_012218 human genbank 54_36p +1 reviewed missense c.2400 p.D800E 0.999 NULL HMMSmart_SM00572,HMMPfam_DZF,superfamily_dsRNA-binding domain-like,HMMPfam_dsrm,HMMSmart_SM00358 - no_errors DOCK6 57572 genome.wustl.edu 36 19 11215520 11215520 + Silent SNP G G A novel unknown TCGA-29-1710-01A-02W-0633-09 TCGA-29-1710-10A-01W-0633-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx be957b7d-5bc0-4e26-8219-b8082b200f93 6b10bb23-a9a0-4021-a0d4-e05f0ed727ba 19 11215520 11215520 G A SNP DOCK6 NM_020812 human genbank 54_36p -1 validated silent c.1062 p.C354 1.000 NULL HMMPfam_Ded_cyto - no_errors DKK3 27122 genome.wustl.edu 36 11 11980506 11980506 + Silent SNP A A G novel unknown TCGA-29-1710-01A-02W-0633-09 TCGA-29-1710-10A-01W-0633-09 A A Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx be957b7d-5bc0-4e26-8219-b8082b200f93 6b10bb23-a9a0-4021-a0d4-e05f0ed727ba 11 11980506 11980506 A G SNP DKK3 NM_001018057 human genbank 54_36p -1 reviewed silent c.268 p.L90 0.017 NULL HMMPfam_Dickkopf_N - no_errors LOC388076 388076 genome.wustl.edu 36 15 19941981 19941981 + Missense_Mutation SNP G G A novel unknown TCGA-29-1710-01A-02W-0633-09 TCGA-29-1710-10A-01W-0633-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx be957b7d-5bc0-4e26-8219-b8082b200f93 6b10bb23-a9a0-4021-a0d4-e05f0ed727ba 15 19941981 19941981 G A SNP LOC388076 XM_931016 human genbank 54_36p -1 model missense c.230 p.T77M 1.000 HMMPfam_Ribosomal_S8e HMMPfam_Ribosomal_S8e - pseudogene HNRNPR 10236 genome.wustl.edu 36 1 23520724 23520724 + Missense_Mutation SNP C C T novel unknown TCGA-29-1710-01A-02W-0633-09 TCGA-29-1710-10A-01W-0633-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx be957b7d-5bc0-4e26-8219-b8082b200f93 6b10bb23-a9a0-4021-a0d4-e05f0ed727ba 1 23520724 23520724 C T SNP HNRNPR NM_001102398 human genbank 54_36p -1 reviewed missense c.695 p.R232H 1.000 superfamily_SSF54928,HMMSmart_RRM,HMMPfam_RRM_1 superfamily_SSF54928,HMMSmart_RRM,HMMPfam_RRM_1 - no_errors DOCK5 80005 genome.wustl.edu 36 8 25317066 25317066 + Missense_Mutation SNP C C T novel unknown TCGA-29-1710-01A-02W-0633-09 TCGA-29-1710-10A-01W-0633-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx be957b7d-5bc0-4e26-8219-b8082b200f93 6b10bb23-a9a0-4021-a0d4-e05f0ed727ba 8 25317066 25317066 C T SNP DOCK5 NM_024940 human genbank 54_36p +1 validated missense c.5002 p.R1668W 1.000 NULL superfamily_SH3-domain,HMMPfam_SH3_1,HMMSmart_SM00326 - no_errors BAI2 576 genome.wustl.edu 36 1 31977760 31977760 + Missense_Mutation SNP C C A novel unknown TCGA-29-1710-01A-02W-0633-09 TCGA-29-1710-10A-01W-0633-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx be957b7d-5bc0-4e26-8219-b8082b200f93 6b10bb23-a9a0-4021-a0d4-e05f0ed727ba 1 31977760 31977760 C A SNP BAI2 NM_001703 human genbank 54_36p -1 reviewed missense c.2231 p.G744V 1.000 NULL superfamily_TSP-1 type 1 repeat,HMMSmart_SM00209,HMMPfam_TSP_1,HMMSmart_SM00008,HMMPfam_HRM,HMMPfam_GPS,HMMSmart_SM00303,HMMPfam_7tm_2 - no_errors PSMB9 5698 genome.wustl.edu 36 6 32935168 32935168 + Missense_Mutation SNP C C G novel unknown TCGA-29-1710-01A-02W-0633-09 TCGA-29-1710-10A-01W-0633-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx be957b7d-5bc0-4e26-8219-b8082b200f93 6b10bb23-a9a0-4021-a0d4-e05f0ed727ba 6 32935168 32935168 C G SNP PSMB9 NM_002800 human genbank 54_36p +1 reviewed missense c.541 p.L181V 0.999 superfamily_N-terminal nucleophile aminohydrolases (Ntn hydrolases),HMMPfam_Proteasome superfamily_N-terminal nucleophile aminohydrolases (Ntn hydrolases),HMMPfam_Proteasome,PatternScan_PROTEASOME_B - no_errors LRRFIP2 9209 genome.wustl.edu 36 3 37165401 37165401 + Silent SNP G G A novel unknown TCGA-29-1710-01A-02W-0633-09 TCGA-29-1710-10A-01W-0633-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx be957b7d-5bc0-4e26-8219-b8082b200f93 6b10bb23-a9a0-4021-a0d4-e05f0ed727ba 3 37165401 37165401 G A SNP LRRFIP2 NM_006309 human genbank 54_36p -1 validated silent c.78 p.N26 1.000 NULL HMMPfam_DUF2051 - no_errors KIAA0564 23078 genome.wustl.edu 36 13 41305562 41305562 + Missense_Mutation SNP C C A novel unknown TCGA-29-1710-01A-02W-0633-09 TCGA-29-1710-10A-01W-0633-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx be957b7d-5bc0-4e26-8219-b8082b200f93 6b10bb23-a9a0-4021-a0d4-e05f0ed727ba 13 41305562 41305562 C A SNP KIAA0564 NM_015058 human genbank 54_36p -1 validated missense c.1531 p.V511F 1.000 superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_AAA_5 superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_AAA_5,HMMSmart_SM00382,superfamily_vWA-like,HMMSmart_SM00327 - no_errors PLEKHH2 130271 genome.wustl.edu 36 2 43823471 43823471 + Silent SNP G G A novel unknown TCGA-29-1710-01A-02W-0633-09 TCGA-29-1710-10A-01W-0633-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx be957b7d-5bc0-4e26-8219-b8082b200f93 6b10bb23-a9a0-4021-a0d4-e05f0ed727ba 2 43823471 43823471 G A SNP PLEKHH2 NM_172069 human genbank 54_36p +1 validated silent c.3309 p.R1103 0.644 HMMSmart_SM00139,HMMPfam_MyTH4 superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233,HMMSmart_SM00139,HMMPfam_MyTH4,HMMSmart_SM00295,superfamily_Second domain of FERM,HMMPfam_FERM_M - no_errors RINL 126432 genome.wustl.edu 36 19 44054315 44054315 + Missense_Mutation SNP C C T novel unknown TCGA-29-1710-01A-02W-0633-09 TCGA-29-1710-10A-01W-0633-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx be957b7d-5bc0-4e26-8219-b8082b200f93 6b10bb23-a9a0-4021-a0d4-e05f0ed727ba 19 44054315 44054315 C T SNP RINL NM_198445 human genbank 54_36p -1 provisional missense c.7 p.D3N 0.707 NULL superfamily_SSF109993,HMMPfam_VPS9 - no_errors ZNF488 118738 genome.wustl.edu 36 10 47991005 47991005 + Missense_Mutation SNP G G A novel unknown TCGA-29-1710-01A-02W-0633-09 TCGA-29-1710-10A-01W-0633-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx be957b7d-5bc0-4e26-8219-b8082b200f93 6b10bb23-a9a0-4021-a0d4-e05f0ed727ba 10 47991005 47991005 G A SNP ZNF488 NM_153034 human genbank 54_36p +1 provisional missense c.467 p.R156Q 0.000 NULL HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMPfam_zf-C2H2 - no_errors TROAP 10024 genome.wustl.edu 36 12 48011407 48011407 + Missense_Mutation SNP C C T novel unknown TCGA-29-1710-01A-02W-0633-09 TCGA-29-1710-10A-01W-0633-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx be957b7d-5bc0-4e26-8219-b8082b200f93 6b10bb23-a9a0-4021-a0d4-e05f0ed727ba 12 48011407 48011407 C T SNP TROAP NM_005480 human genbank 54_36p +1 validated missense c.2242 p.R748W 0.001 NULL NULL - no_errors DMXL2 23312 genome.wustl.edu 36 15 49529708 49529708 + Silent SNP C C T novel unknown TCGA-29-1710-01A-02W-0633-09 TCGA-29-1710-10A-01W-0633-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx be957b7d-5bc0-4e26-8219-b8082b200f93 6b10bb23-a9a0-4021-a0d4-e05f0ed727ba 15 49529708 49529708 C T SNP DMXL2 NM_015263 human genbank 54_36p -1 validated silent c.8811 p.T2937 0.900 superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40 superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40 - no_errors ZNF613 79898 genome.wustl.edu 36 19 57140523 57140523 + Silent SNP A A G novel unknown TCGA-29-1710-01A-02W-0633-09 TCGA-29-1710-10A-01W-0633-09 A A Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx be957b7d-5bc0-4e26-8219-b8082b200f93 6b10bb23-a9a0-4021-a0d4-e05f0ed727ba 19 57140523 57140523 A G SNP ZNF613 NM_001031721 human genbank 54_36p +1 provisional silent c.1575 p.S525 0.000 superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1 superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1 - no_errors CHD7 55636 genome.wustl.edu 36 8 61816950 61816950 + Silent SNP G G A novel unknown TCGA-29-1710-01A-02W-0633-09 TCGA-29-1710-10A-01W-0633-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx be957b7d-5bc0-4e26-8219-b8082b200f93 6b10bb23-a9a0-4021-a0d4-e05f0ed727ba 8 61816950 61816950 G A SNP CHD7 NM_017780 human genbank 54_36p +1 reviewed silent c.405 p.G135 1.000 NULL superfamily_Chromo domain-like,HMMSmart_SM00298,HMMPfam_Chromo,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00487,HMMPfam_SNF2_N,HMMSmart_SM00490,HMMPfam_Helicase_C,HMMPfam_BRK,HMMSmart_SM00592 - no_errors DPP3 10072 genome.wustl.edu 36 11 66015419 66015419 + Missense_Mutation SNP G G A novel unknown TCGA-29-1710-01A-02W-0633-09 TCGA-29-1710-10A-01W-0633-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx be957b7d-5bc0-4e26-8219-b8082b200f93 6b10bb23-a9a0-4021-a0d4-e05f0ed727ba 11 66015419 66015419 G A SNP DPP3 NM_005700 human genbank 54_36p +1 reviewed missense c.787 p.E263K 1.000 HMMPfam_Peptidase_M49 HMMPfam_Peptidase_M49 - no_errors UBAC2 337867 genome.wustl.edu 36 13 98818096 98818096 + Missense_Mutation SNP G G A novel unknown TCGA-29-1710-01A-02W-0633-09 TCGA-29-1710-10A-01W-0633-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx be957b7d-5bc0-4e26-8219-b8082b200f93 6b10bb23-a9a0-4021-a0d4-e05f0ed727ba 13 98818096 98818096 G A SNP UBAC2 NM_177967 human genbank 54_36p +1 validated missense c.757 p.V253I 0.918 NULL superfamily_UBA_like,HMMPfam_UBA,HMMSmart_UBA - no_errors EPHA6 285220 genome.wustl.edu 36 3 98921824 98921824 + Silent SNP C C A novel unknown TCGA-29-1710-01A-02W-0633-09 TCGA-29-1710-10A-01W-0633-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx be957b7d-5bc0-4e26-8219-b8082b200f93 6b10bb23-a9a0-4021-a0d4-e05f0ed727ba 3 98921824 98921824 C A SNP EPHA6 NM_001080448 human genbank 54_36p +1 provisional silent c.2814 p.A938 0.999 superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220 superfamily_Galactose-binding domain-like,HMMPfam_Ephrin_lbd,HMMSmart_SM00615,PatternScan_RECEPTOR_TYR_KIN_V_1,PatternScan_RECEPTOR_TYR_KIN_V_2,superfamily_Growth factor receptor domain,PatternScan_EGF_2,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_TYR,superfamily_SAM/Pointed domain,HMMSmart_SM00454,HMMPfam_SAM_1 - no_errors C7orf43 55262 genome.wustl.edu 36 7 99592691 99592691 + Silent SNP G G A novel unknown TCGA-29-1710-01A-02W-0633-09 TCGA-29-1710-10A-01W-0633-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx be957b7d-5bc0-4e26-8219-b8082b200f93 6b10bb23-a9a0-4021-a0d4-e05f0ed727ba 7 99592691 99592691 G A SNP C7orf43 NM_018275 human genbank 54_36p -1 predicted silent c.807 p.V269 1.000 NULL PatternScan_ODR_DC_2_2 - no_errors MYL10 93408 genome.wustl.edu 36 7 101046263 101046263 + Missense_Mutation SNP T T C novel unknown TCGA-29-1710-01A-02W-0633-09 TCGA-29-1710-10A-01W-0633-09 T T Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx be957b7d-5bc0-4e26-8219-b8082b200f93 6b10bb23-a9a0-4021-a0d4-e05f0ed727ba 7 101046263 101046263 T C SNP MYL10 NM_138403 human genbank 54_36p -1 validated missense c.490 p.K164E 1.000 superfamily_SSF47473,HMMSmart_EFh superfamily_SSF47473,HMMSmart_EFh,HMMPfam_efhand,PatternScan_EF_HAND_1 - no_errors GPR128 84873 genome.wustl.edu 36 3 101896299 101896299 + Missense_Mutation SNP T T C novel unknown TCGA-29-1710-01A-02W-0633-09 TCGA-29-1710-10A-01W-0633-09 T T Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx be957b7d-5bc0-4e26-8219-b8082b200f93 6b10bb23-a9a0-4021-a0d4-e05f0ed727ba 3 101896299 101896299 T C SNP GPR128 NM_032787 human genbank 54_36p +1 provisional missense c.2158 p.Y720H 0.454 HMMPfam_7tm_2 PatternScan_G_PROTEIN_RECEP_F2_2,HMMPfam_GPS,HMMSmart_GPS,HMMPfam_7tm_2 - no_errors RNF20 56254 genome.wustl.edu 36 9 103342417 103342417 + Nonsense_Mutation SNP C C T novel unknown TCGA-29-1710-01A-02W-0633-09 TCGA-29-1710-10A-01W-0633-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx be957b7d-5bc0-4e26-8219-b8082b200f93 6b10bb23-a9a0-4021-a0d4-e05f0ed727ba 9 103342417 103342417 C T SNP RNF20 NM_019592 human genbank 54_36p +1 reviewed nonsense c.241 p.R81* 0.997 NULL superfamily_RING/U-box,HMMSmart_SM00184,HMMPfam_zf-C3HC4,PatternScan_ZF_RING_1 - no_errors SLC16A1 6566 genome.wustl.edu 36 1 113258214 113258214 + Missense_Mutation SNP C C A novel unknown TCGA-29-1710-01A-02W-0633-09 TCGA-29-1710-10A-01W-0633-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx be957b7d-5bc0-4e26-8219-b8082b200f93 6b10bb23-a9a0-4021-a0d4-e05f0ed727ba 1 113258214 113258214 C A SNP SLC16A1 NM_003051 human genbank 54_36p -1 validated missense c.1325 p.G442V 1.000 superfamily_MFS_gen_substrate_transporter superfamily_MFS_gen_substrate_transporter,HMMPfam_MFS_1 - no_errors ZBTB20 26137 genome.wustl.edu 36 3 115552388 115552388 + Silent SNP G G A novel unknown TCGA-29-1710-01A-02W-0633-09 TCGA-29-1710-10A-01W-0633-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx be957b7d-5bc0-4e26-8219-b8082b200f93 6b10bb23-a9a0-4021-a0d4-e05f0ed727ba 3 115552388 115552388 G A SNP ZBTB20 NM_015642 human genbank 54_36p -1 provisional silent c.1008 p.P336 0.090 NULL superfamily_BTB/POZ_fold,HMMPfam_BTB,HMMSmart_BTB,superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1 - no_errors ADAD1 132612 genome.wustl.edu 36 4 123536929 123536929 + Missense_Mutation SNP G G A novel unknown TCGA-29-1710-01A-02W-0633-09 TCGA-29-1710-10A-01W-0633-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx be957b7d-5bc0-4e26-8219-b8082b200f93 6b10bb23-a9a0-4021-a0d4-e05f0ed727ba 4 123536929 123536929 G A SNP ADAD1 NM_139243 human genbank 54_36p +1 provisional missense c.671 p.R224H 1.000 HMMSmart_SM00552 superfamily_dsRNA-binding domain-like,HMMPfam_dsrm,HMMSmart_SM00358,HMMSmart_SM00552,PatternScan_THIOL_PROTEASE_HIS,HMMPfam_A_deamin - no_errors PVT1 5820 genome.wustl.edu 36 8 129020970 129020970 + RNA SNP C T T novel unknown TCGA-29-1710-01A-02W-0633-09 TCGA-29-1710-10A-01W-0633-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx be957b7d-5bc0-4e26-8219-b8082b200f93 6b10bb23-a9a0-4021-a0d4-e05f0ed727ba 8 129020970 129020970 C T SNP PVT1 NR_003367 human genbank 54_36p +1 validated rna NULL NULL 0.013 - - - no_errors LOC392100 392100 genome.wustl.edu 36 7 136050452 136050452 + RNA SNP G G T novel unknown TCGA-29-1710-01A-02W-0633-09 TCGA-29-1710-10A-01W-0633-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx be957b7d-5bc0-4e26-8219-b8082b200f93 6b10bb23-a9a0-4021-a0d4-e05f0ed727ba 7 136050452 136050452 G T SNP LOC392100 XR_017485 human genbank 54_36p +1 model rna NULL NULL 1.000 - - - pseudogene ARHGAP15 55843 genome.wustl.edu 36 2 143629554 143629554 + Missense_Mutation SNP A A G novel unknown TCGA-29-1710-01A-02W-0633-09 TCGA-29-1710-10A-01W-0633-09 A A Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx be957b7d-5bc0-4e26-8219-b8082b200f93 6b10bb23-a9a0-4021-a0d4-e05f0ed727ba 2 143629554 143629554 A G SNP ARHGAP15 NM_018460 human genbank 54_36p +1 validated missense c.25 p.T9A 0.138 NULL superfamily_SSF50729,HMMPfam_PH,HMMSmart_PH,superfamily_Rho_GAP,HMMSmart_RhoGAP,HMMPfam_RhoGAP - no_errors FAT2 2196 genome.wustl.edu 36 5 150894222 150894222 + Missense_Mutation SNP A A G novel unknown TCGA-29-1710-01A-02W-0633-09 TCGA-29-1710-10A-01W-0633-09 A A Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx be957b7d-5bc0-4e26-8219-b8082b200f93 6b10bb23-a9a0-4021-a0d4-e05f0ed727ba 5 150894222 150894222 A G SNP FAT2 NM_001447 human genbank 54_36p -1 reviewed missense c.9368 p.F3123S 0.996 superfamily_Concanavalin A-like lectins/glucanases,superfamily_Cadherin-like,HMMPfam_Cadherin superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00282,HMMPfam_Laminin_G_2,superfamily_EGF/Laminin,HMMSmart_SM00179,HMMSmart_SM00181,HMMPfam_EGF,PatternScan_EGF_1,PatternScan_EGF_2 - no_errors LOC149501 149501 genome.wustl.edu 36 1 155309749 155309749 + RNA SNP C C T novel unknown TCGA-29-1710-01A-02W-0633-09 TCGA-29-1710-10A-01W-0633-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx be957b7d-5bc0-4e26-8219-b8082b200f93 6b10bb23-a9a0-4021-a0d4-e05f0ed727ba 1 155309749 155309749 C T SNP LOC149501 XR_017100 human genbank 54_36p +1 model rna NULL NULL 0.028 - - - pseudogene RBM46 166863 genome.wustl.edu 36 4 155940085 155940085 + Missense_Mutation SNP A A T novel unknown TCGA-29-1710-01A-02W-0633-09 TCGA-29-1710-10A-01W-0633-09 A A Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx be957b7d-5bc0-4e26-8219-b8082b200f93 6b10bb23-a9a0-4021-a0d4-e05f0ed727ba 4 155940085 155940085 A T SNP RBM46 NM_144979 human genbank 54_36p +1 validated missense c.1321 p.S441C 0.970 NULL superfamily_SSF54928,HMMSmart_RRM,HMMPfam_RRM_1 - no_errors LOC100128269 0 genome.wustl.edu 36 7 156683667 156683667 + RNA SNP C C T novel unknown TCGA-29-1710-01A-02W-0633-09 TCGA-29-1710-10A-01W-0633-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx be957b7d-5bc0-4e26-8219-b8082b200f93 6b10bb23-a9a0-4021-a0d4-e05f0ed727ba 7 156683667 156683667 C T SNP LOC100128269 XR_038661 human genbank 54_36p -1 model rna NULL NULL 0.186 - - - pseudogene ADAM23 8745 genome.wustl.edu 36 2 207116247 207116247 + Missense_Mutation SNP G G A novel unknown TCGA-29-1710-01A-02W-0633-09 TCGA-29-1710-10A-01W-0633-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx be957b7d-5bc0-4e26-8219-b8082b200f93 6b10bb23-a9a0-4021-a0d4-e05f0ed727ba 2 207116247 207116247 G A SNP ADAM23 NM_003812 human genbank 54_36p +1 reviewed missense c.682 p.V228M 0.891 HMMPfam_Pep_M12B_propep "HMMPfam_Pep_M12B_propep,superfamily_Metalloproteases (""zincins"") catalytic domain,HMMPfam_Reprolysin,HMMPfam_Disintegrin,HMMSmart_SM00050,superfamily_Blood coagulation inhibitor (disintegrin),HMMSmart_SM00608,HMMPfam_ADAM_CR,HMMPfam_EGF_2,PatternScan_EGF_1" - no_errors GPR55 9290 genome.wustl.edu 36 2 231483616 231483616 + Silent SNP G G A novel unknown TCGA-29-1710-01A-02W-0633-09 TCGA-29-1710-10A-01W-0633-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx be957b7d-5bc0-4e26-8219-b8082b200f93 6b10bb23-a9a0-4021-a0d4-e05f0ed727ba 2 231483616 231483616 G A SNP GPR55 NM_005683 human genbank 54_36p -1 validated silent c.306 p.F102 1.000 superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1 superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1 - no_errors MGA 23269 genome.wustl.edu 36 15 39846708 39846730 + Frame_Shift_Del DEL TTGGCACCTGTTGTGGCTAAATT TTGGCACCTGTTGTGGCTAAATT - novel unknown TCGA-29-1710-01A-02W-0633-09 TCGA-29-1710-10A-01W-0633-09 TTGGCACCTGTTGTGGCTAAATT TTGGCACCTGTTGTGGCTAAATT Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx be957b7d-5bc0-4e26-8219-b8082b200f93 6b10bb23-a9a0-4021-a0d4-e05f0ed727ba 15 39846708 39846730 TTGGCACCTGTTGTGGCTAAATT - DEL MGA NM_001080541 human genbank 54_36p +1 provisional frame_shift_del c.9283_9305 p.L3095fs 0.998:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:0.997:0.995:0.989:0.989:0.988:0.982:0.987:0.997:0.997:1.000:1.000:0.999:0.986:0.984 NULL superfamily_p53-like transcription factors,HMMSmart_SM00425,HMMPfam_T-box,PatternScan_TBOX_2,HMMPfam_HLH,superfamily_HLH helix-loop-helix DNA-binding domain,HMMSmart_SM00353 (deletion:cds_exon[39845494,39846770]) no_errors SIX4 51804 genome.wustl.edu 36 14 60260316 60260318 + In_Frame_Del DEL GCC GCC - novel unknown TCGA-29-1710-01A-02W-0633-09 TCGA-29-1710-10A-01W-0633-09 GCC GCC Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx be957b7d-5bc0-4e26-8219-b8082b200f93 6b10bb23-a9a0-4021-a0d4-e05f0ed727ba 14 60260316 60260318 GCC - DEL SIX4 NM_017420 human genbank 54_36p -1 validated in_frame_del c.230_228 p.A77in_frame_del 0.893:0.952:0.971 NULL superfamily_Homeodomain_like,HMMSmart_HOX,HMMPfam_Homeobox,PatternScan_HOMEOBOX_1 (deletion:cds_exon[60259683,60260545]) no_errors OR8B4 283162 genome.wustl.edu 36 11 123799419 123799419 + Frame_Shift_Del DEL A A - novel unknown TCGA-29-1710-01A-02W-0633-09 TCGA-29-1710-10A-01W-0633-09 A A Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx be957b7d-5bc0-4e26-8219-b8082b200f93 6b10bb23-a9a0-4021-a0d4-e05f0ed727ba 11 123799419 123799419 A - DEL OR8B4 NM_001005196 human genbank 54_36p -1 provisional frame_shift_del c.559 p.S187fs 1.000 superfamily_SSF81321,HMMPfam_7tm_1 superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1 (deletion:cds_exon[123799048,123799977]) no_errors