Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error
TUBB8	347688	genome.wustl.edu	36	10	83505	83505	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-29-1770-01A-01W-0633-09	TCGA-29-1770-10A-01W-0634-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	b0cc31dd-6efe-421d-93c1-260cdb19ebcb	740b55fc-1887-4d89-b81a-f9b172e03bb1	10	83505	83505	C	T	SNP	TUBB8	NM_177987	human	genbank	54_36p	-1	provisional	missense	c.827	p.R276Q	1.000	superfamily_Tub_FtsZ_C,HMMPfam_Tubulin_C	PatternScan_TUBULIN_B_AUTOREG,superfamily_Tubulin_FtsZ,HMMPfam_Tubulin,PatternScan_TUBULIN,superfamily_Tub_FtsZ_C,HMMPfam_Tubulin_C	-	no_errors
PIGG	54872	genome.wustl.edu	36	4	514364	514364	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-29-1770-01A-01W-0633-09	TCGA-29-1770-10A-01W-0634-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	b0cc31dd-6efe-421d-93c1-260cdb19ebcb	740b55fc-1887-4d89-b81a-f9b172e03bb1	4	514364	514364	T	G	SNP	PIGG	NM_017733	human	genbank	54_36p	+1	validated	missense	c.2377	p.L793V	0.473	NULL	superfamily_Alkaline_phosphatase_core	-	no_errors
IFT140	9742	genome.wustl.edu	36	16	1573337	1573337	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-29-1770-01A-01W-0633-09	TCGA-29-1770-10A-01W-0634-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	b0cc31dd-6efe-421d-93c1-260cdb19ebcb	740b55fc-1887-4d89-b81a-f9b172e03bb1	16	1573337	1573337	C	G	SNP	IFT140	NM_014714	human	genbank	54_36p	-1	validated	missense	c.1411	p.G471R	0.856	superfamily_YVTN repeat-like/Quinoprotein amine dehydrogenase	superfamily_YVTN repeat-like/Quinoprotein amine dehydrogenase,HMMSmart_SM00320,HMMPfam_WD40,superfamily_TPR-like	-	no_errors
RFX3	5991	genome.wustl.edu	36	9	3215132	3215132	+	Silent	SNP	G	G	A	novel	unknown	TCGA-29-1770-01A-01W-0633-09	TCGA-29-1770-10A-01W-0634-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	b0cc31dd-6efe-421d-93c1-260cdb19ebcb	740b55fc-1887-4d89-b81a-f9b172e03bb1	9	3215132	3215132	G	A	SNP	RFX3	NM_134428	human	genbank	54_36p	-1	reviewed	silent	c.2160	p.L720	1.000	NULL	"HMMPfam_RFX1_trans_act,HMMPfam_RFX_DNA_binding,superfamily_""Winged helix"" DNA-binding domain"	-	no_errors
TUBAL3	79861	genome.wustl.edu	36	10	5426132	5426132	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-29-1770-01A-01W-0633-09	TCGA-29-1770-10A-01W-0634-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	b0cc31dd-6efe-421d-93c1-260cdb19ebcb	740b55fc-1887-4d89-b81a-f9b172e03bb1	10	5426132	5426132	G	T	SNP	TUBAL3	NM_024803	human	genbank	54_36p	-1	validated	missense	c.689	p.S230Y	1.000	superfamily_Tubulin nucleotide-binding domain-like,HMMPfam_Tubulin	superfamily_Tubulin nucleotide-binding domain-like,HMMPfam_Tubulin,PatternScan_TUBULIN,superfamily_Tubulin C-terminal domain-like,HMMPfam_Tubulin_C	-	no_errors
PMS2	5395	genome.wustl.edu	36	7	5984780	5984780	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-29-1770-01A-01W-0633-09	TCGA-29-1770-10A-01W-0634-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	b0cc31dd-6efe-421d-93c1-260cdb19ebcb	740b55fc-1887-4d89-b81a-f9b172e03bb1	7	5984780	5984780	C	A	SNP	PMS2	NM_000535	human	genbank	54_36p	-1	reviewed	missense	c.2248	p.G750C	1.000	HMMPfam_MutL_C	superfamily_ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase,HMMPfam_HATPase_c,PatternScan_DNA_MISMATCH_REPAIR_1,superfamily_Ribosomal protein S5 domain 2-like,HMMPfam_DNA_mis_repair,HMMPfam_MutL_C	-	no_errors
TNFRSF1A	7132	genome.wustl.edu	36	12	6308739	6308739	+	Nonstop_Mutation	SNP	T	T	A	novel	unknown	TCGA-29-1770-01A-01W-0633-09	TCGA-29-1770-10A-01W-0634-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	b0cc31dd-6efe-421d-93c1-260cdb19ebcb	740b55fc-1887-4d89-b81a-f9b172e03bb1	12	6308739	6308739	T	A	SNP	TNFRSF1A	NM_001065	human	genbank	54_36p	-1	reviewed	nonstop	c.1368	p.*456C	0.010	NULL	superfamily_TNF receptor-like,HMMPfam_TNFR_c6,HMMSmart_SM00208,PatternScan_TNFR_NGFR_1,PatternScan_EGF_2,superfamily_DEATH domain,HMMSmart_SM00005,HMMPfam_Death	-	no_errors
TP53	7157	genome.wustl.edu	36	17	7518915	7518915	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-29-1770-01A-01W-0633-09	TCGA-29-1770-10A-01W-0634-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	b0cc31dd-6efe-421d-93c1-260cdb19ebcb	740b55fc-1887-4d89-b81a-f9b172e03bb1	17	7518915	7518915	T	C	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	missense	c.659	p.Y220C	1.000	HMMPfam_P53,superfamily_p53-like transcription factors	HMMPfam_P53_TAD,HMMPfam_P53,superfamily_p53-like transcription factors,PatternScan_P53,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain	-	no_errors
ARHGEF15	22899	genome.wustl.edu	36	17	8159471	8159471	+	Silent	SNP	G	G	T	novel	unknown	TCGA-29-1770-01A-01W-0633-09	TCGA-29-1770-10A-01W-0634-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	b0cc31dd-6efe-421d-93c1-260cdb19ebcb	740b55fc-1887-4d89-b81a-f9b172e03bb1	17	8159471	8159471	G	T	SNP	ARHGEF15	NM_173728	human	genbank	54_36p	+1	reviewed	silent	c.1275	p.V425	1.000	superfamily_DH-domain,HMMPfam_RhoGEF,HMMSmart_RhoGEF	PatternScan_DH_1,superfamily_DH-domain,HMMPfam_RhoGEF,HMMSmart_RhoGEF,superfamily_SSF50729	-	no_errors
MUC16	94025	genome.wustl.edu	36	19	8935909	8935909	+	Silent	SNP	T	T	C	novel	unknown	TCGA-29-1770-01A-01W-0633-09	TCGA-29-1770-10A-01W-0634-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	b0cc31dd-6efe-421d-93c1-260cdb19ebcb	740b55fc-1887-4d89-b81a-f9b172e03bb1	19	8935909	8935909	T	C	SNP	MUC16	NM_024690	human	genbank	54_36p	-1	validated	silent	c.12537	p.Q4179	0.000	NULL	PatternScan_ATPASE_ALPHA_BETA,superfamily_SEA domain,HMMSmart_SM00200,HMMPfam_SEA	-	no_errors
FARSA	2193	genome.wustl.edu	36	19	12895963	12895963	+	Splice_Site	SNP	A	A	T	novel	unknown	TCGA-29-1770-01A-01W-0633-09	TCGA-29-1770-10A-01W-0634-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	b0cc31dd-6efe-421d-93c1-260cdb19ebcb	740b55fc-1887-4d89-b81a-f9b172e03bb1	19	12895963	12895963	A	T	SNP	FARSA	NM_004461	human	genbank	54_36p	-1	validated	splice_site	c.1388+2	e12+2	1.000	-	-	-	no_errors
XPC	7508	genome.wustl.edu	36	3	14174831	14174831	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-29-1770-01A-01W-0633-09	TCGA-29-1770-10A-01W-0634-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	b0cc31dd-6efe-421d-93c1-260cdb19ebcb	740b55fc-1887-4d89-b81a-f9b172e03bb1	3	14174831	14174831	C	G	SNP	XPC	ENST00000285021	human	ensembl	54_36p	-1	known	missense	c.1548	p.E516D	0.748	HMMPfam_Rad4	HMMPfam_Rad4,HMMPfam_BHD_1,HMMPfam_BHD_2,HMMPfam_BHD_3	-	no_errors
PADI4	23569	genome.wustl.edu	36	1	17537164	17537164	+	Silent	SNP	G	A	A	novel	unknown	TCGA-29-1770-01A-01W-0633-09	TCGA-29-1770-10A-01W-0634-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	b0cc31dd-6efe-421d-93c1-260cdb19ebcb	740b55fc-1887-4d89-b81a-f9b172e03bb1	1	17537164	17537164	G	A	SNP	PADI4	NM_012387	human	genbank	54_36p	+1	reviewed	silent	c.453	p.L151	1.000	HMMPfam_PAD_M,superfamily_Peptidylarginine deiminase Pad4 middle domain	HMMPfam_PAD_N,superfamily_Cupredoxins,HMMPfam_PAD_M,superfamily_Peptidylarginine deiminase Pad4 middle domain,HMMPfam_PAD,superfamily_Pentein	-	no_errors
ZNF74	7625	genome.wustl.edu	36	22	19090473	19090473	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-29-1770-01A-01W-0633-09	TCGA-29-1770-10A-01W-0634-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	b0cc31dd-6efe-421d-93c1-260cdb19ebcb	740b55fc-1887-4d89-b81a-f9b172e03bb1	22	19090473	19090473	G	A	SNP	ZNF74	NM_003426	human	genbank	54_36p	+1	validated	missense	c.1150	p.G384S	0.946	superfamily_C2H2 and C2HC zinc fingers	superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
ENSG00000207834	0	genome.wustl.edu	36	22	21336933	21336933	+	RNA	SNP	C	C	A	novel	unknown	TCGA-29-1770-01A-01W-0633-09	TCGA-29-1770-10A-01W-0634-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	b0cc31dd-6efe-421d-93c1-260cdb19ebcb	740b55fc-1887-4d89-b81a-f9b172e03bb1	22	21336933	21336933	C	A	SNP	ENSG00000207834	ENST00000385099	human	ensembl	54_36p	+1	novel	rna	NULL	NULL	0.124	-	-	-	no_errors
ACIN1	22985	genome.wustl.edu	36	14	22618971	22618971	+	Silent	SNP	G	G	A	novel	unknown	TCGA-29-1770-01A-01W-0633-09	TCGA-29-1770-10A-01W-0634-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	b0cc31dd-6efe-421d-93c1-260cdb19ebcb	740b55fc-1887-4d89-b81a-f9b172e03bb1	14	22618971	22618971	G	A	SNP	ACIN1	NM_014977	human	genbank	54_36p	-1	validated	silent	c.1587	p.L529	0.388	NULL	superfamily_SAP domain,HMMPfam_SAP,HMMSmart_SM00513,superfamily_RNA-binding domain RBD	-	no_errors
SNORD115-18	0	genome.wustl.edu	36	15	22999533	22999533	+	RNA	SNP	G	G	A	novel	unknown	TCGA-29-1770-01A-01W-0633-09	TCGA-29-1770-10A-01W-0634-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	b0cc31dd-6efe-421d-93c1-260cdb19ebcb	740b55fc-1887-4d89-b81a-f9b172e03bb1	15	22999533	22999533	G	A	SNP	SNORD115-18	NR_003310	human	genbank	54_36p	+1	provisional	rna	NULL	NULL	0.884	-	-	-	no_errors
RAB34	83871	genome.wustl.edu	36	17	24067148	24067148	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-29-1770-01A-01W-0633-09	TCGA-29-1770-10A-01W-0634-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	b0cc31dd-6efe-421d-93c1-260cdb19ebcb	740b55fc-1887-4d89-b81a-f9b172e03bb1	17	24067148	24067148	G	T	SNP	RAB34	NM_031934	human	genbank	54_36p	-1	validated	missense	c.202	p.L68I	1.000	HMMSmart_SM00173,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Ras,HMMSmart_SM00175,HMMSmart_SM00174,HMMSmart_SM00176	HMMSmart_SM00173,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Ras,HMMSmart_SM00175,HMMSmart_SM00174,HMMSmart_SM00176	-	no_errors
SEZ6L	23544	genome.wustl.edu	36	22	25018600	25018600	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-29-1770-01A-01W-0633-09	TCGA-29-1770-10A-01W-0634-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	b0cc31dd-6efe-421d-93c1-260cdb19ebcb	740b55fc-1887-4d89-b81a-f9b172e03bb1	22	25018600	25018600	G	A	SNP	SEZ6L	NM_021115	human	genbank	54_36p	+1	validated	missense	c.323	p.R108H	0.000	NULL	superfamily_Spermadhesin CUB domain,HMMSmart_SM00042,superfamily_Complement control module/SCR domain,HMMPfam_Sushi,HMMSmart_SM00032,HMMPfam_CUB	-	no_errors
LRMP	4033	genome.wustl.edu	36	12	25148576	25148576	+	Nonsense_Mutation	SNP	C	C	G	novel	unknown	TCGA-29-1770-01A-01W-0633-09	TCGA-29-1770-10A-01W-0634-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	b0cc31dd-6efe-421d-93c1-260cdb19ebcb	740b55fc-1887-4d89-b81a-f9b172e03bb1	12	25148576	25148576	C	G	SNP	LRMP	NM_006152	human	genbank	54_36p	+1	reviewed	nonsense	c.1061	p.S354*	1.000	HMMPfam_MRVI1	HMMPfam_MRVI1	-	no_errors
GPR113	165082	genome.wustl.edu	36	2	26388228	26388228	+	Silent	SNP	G	G	A	novel	unknown	TCGA-29-1770-01A-01W-0633-09	TCGA-29-1770-10A-01W-0634-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	b0cc31dd-6efe-421d-93c1-260cdb19ebcb	740b55fc-1887-4d89-b81a-f9b172e03bb1	2	26388228	26388228	G	A	SNP	GPR113	NM_153835	human	genbank	54_36p	-1	validated	silent	c.1275	p.S425	0.002	NULL	HMMPfam_GPS,HMMSmart_GPS,HMMPfam_7tm_2,PatternScan_G_PROTEIN_RECEP_F2_2	-	no_errors
MAP3K6	9064	genome.wustl.edu	36	1	27563419	27563419	+	Silent	SNP	C	C	G	novel	unknown	TCGA-29-1770-01A-01W-0633-09	TCGA-29-1770-10A-01W-0634-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	b0cc31dd-6efe-421d-93c1-260cdb19ebcb	740b55fc-1887-4d89-b81a-f9b172e03bb1	1	27563419	27563419	C	G	SNP	MAP3K6	NM_004672	human	genbank	54_36p	-1	reviewed	silent	c.558	p.R186	0.942	NULL	HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST,superfamily_SAM/Pointed domain	-	no_errors
C20orf112	140688	genome.wustl.edu	36	20	30507655	30507655	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-29-1770-01A-01W-0633-09	TCGA-29-1770-10A-01W-0634-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	b0cc31dd-6efe-421d-93c1-260cdb19ebcb	740b55fc-1887-4d89-b81a-f9b172e03bb1	20	30507655	30507655	G	A	SNP	C20orf112	NM_080616	human	genbank	54_36p	-1	validated	missense	c.314	p.S105F	0.499	NULL	PatternScan_ILVD_EDD_1	-	no_errors
TMPPE	0	genome.wustl.edu	36	3	33110661	33110661	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-29-1770-01A-01W-0633-09	TCGA-29-1770-10A-01W-0634-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	b0cc31dd-6efe-421d-93c1-260cdb19ebcb	740b55fc-1887-4d89-b81a-f9b172e03bb1	3	33110661	33110661	C	T	SNP	TMPPE	NM_001039770	human	genbank	54_36p	-1	validated	missense	c.31	p.A11T	0.002	NULL	HMMPfam_Metallophos,superfamily_Metallo-dependent phosphatases	-	no_errors
LOC647211	647211	genome.wustl.edu	36	16	33316166	33316166	+	RNA	SNP	T	T	A	novel	unknown	TCGA-29-1770-01A-01W-0633-09	TCGA-29-1770-10A-01W-0634-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	b0cc31dd-6efe-421d-93c1-260cdb19ebcb	740b55fc-1887-4d89-b81a-f9b172e03bb1	16	33316166	33316166	T	A	SNP	LOC647211	XR_017499	human	genbank	54_36p	+1	model	rna	NULL	NULL	0.532	-	-	-	pseudogene
TBC1D22B	55633	genome.wustl.edu	36	6	37360165	37360165	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-29-1770-01A-01W-0633-09	TCGA-29-1770-10A-01W-0634-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	b0cc31dd-6efe-421d-93c1-260cdb19ebcb	740b55fc-1887-4d89-b81a-f9b172e03bb1	6	37360165	37360165	G	A	SNP	TBC1D22B	NM_017772	human	genbank	54_36p	+1	validated	missense	c.748	p.E250K	1.000	superfamily_Ypt/Rab-GAP domain of gyp1p,HMMPfam_TBC,HMMSmart_SM00164	superfamily_Ypt/Rab-GAP domain of gyp1p,HMMPfam_TBC,HMMSmart_SM00164	-	no_errors
CDCA8	55143	genome.wustl.edu	36	1	37938723	37938723	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-29-1770-01A-01W-0633-09	TCGA-29-1770-10A-01W-0634-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	b0cc31dd-6efe-421d-93c1-260cdb19ebcb	740b55fc-1887-4d89-b81a-f9b172e03bb1	1	37938723	37938723	G	T	SNP	CDCA8	NM_018101	human	genbank	54_36p	+1	validated	missense	c.366	p.M122I	0.990	HMMPfam_Borealin	HMMPfam_Borealin	-	no_errors
PSMC3IP	29893	genome.wustl.edu	36	17	37978699	37978699	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-29-1770-01A-01W-0633-09	TCGA-29-1770-10A-01W-0634-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	b0cc31dd-6efe-421d-93c1-260cdb19ebcb	740b55fc-1887-4d89-b81a-f9b172e03bb1	17	37978699	37978699	C	G	SNP	PSMC3IP	ENST00000393795	human	ensembl	54_36p	-1	known	missense	c.548	p.C183S	0.966	NULL	HMMPfam_TBPIP	-	no_errors
EGFLAM	133584	genome.wustl.edu	36	5	38444922	38444922	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-29-1770-01A-01W-0633-09	TCGA-29-1770-10A-01W-0634-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	b0cc31dd-6efe-421d-93c1-260cdb19ebcb	740b55fc-1887-4d89-b81a-f9b172e03bb1	5	38444922	38444922	T	A	SNP	EGFLAM	NM_152403	human	genbank	54_36p	+1	validated	missense	c.1308	p.D436E	0.995	superfamily_ConA_like_lec_gl,HMMSmart_LamG,HMMPfam_Laminin_G_1	superfamily_FN_III-like,HMMSmart_FN3,HMMPfam_fn3,HMMSmart_EGF,superfamily_ConA_like_lec_gl,PatternScan_EGF_1,HMMSmart_LamG,HMMPfam_Laminin_G_1,HMMPfam_EGF,PatternScan_EGF_2,HMMPfam_Laminin_G_2	-	no_errors
DSCAM	1826	genome.wustl.edu	36	21	40336436	40336436	+	Silent	SNP	A	A	G	novel	unknown	TCGA-29-1770-01A-01W-0633-09	TCGA-29-1770-10A-01W-0634-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	b0cc31dd-6efe-421d-93c1-260cdb19ebcb	740b55fc-1887-4d89-b81a-f9b172e03bb1	21	40336436	40336436	A	G	SNP	DSCAM	NM_001389	human	genbank	54_36p	-1	validated	silent	c.5418	p.S1806	1.000	NULL	superfamily_Immunoglobulin,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,HMMSmart_SM00406,HMMPfam_ig,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3	-	no_errors
NHP2L1	4809	genome.wustl.edu	36	22	40401107	40401107	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-29-1770-01A-01W-0633-09	TCGA-29-1770-10A-01W-0634-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	b0cc31dd-6efe-421d-93c1-260cdb19ebcb	740b55fc-1887-4d89-b81a-f9b172e03bb1	22	40401107	40401107	C	T	SNP	NHP2L1	NM_001003796	human	genbank	54_36p	-1	reviewed	missense	c.163	p.V55M	1.000	superfamily_L30e-like,HMMPfam_Ribosomal_L7Ae	superfamily_L30e-like,HMMPfam_Ribosomal_L7Ae,PatternScan_RIBOSOMAL_L7AE	-	no_errors
COL9A2	1298	genome.wustl.edu	36	1	40549798	40549798	+	Silent	SNP	C	C	A	novel	unknown	TCGA-29-1770-01A-01W-0633-09	TCGA-29-1770-10A-01W-0634-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	b0cc31dd-6efe-421d-93c1-260cdb19ebcb	740b55fc-1887-4d89-b81a-f9b172e03bb1	1	40549798	40549798	C	A	SNP	COL9A2	NM_001852	human	genbank	54_36p	-1	reviewed	silent	c.480	p.P160	0.592	HMMPfam_Collagen	HMMPfam_Collagen	-	no_errors
SPG11	80208	genome.wustl.edu	36	15	42675808	42675808	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-29-1770-01A-01W-0633-09	TCGA-29-1770-10A-01W-0634-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	b0cc31dd-6efe-421d-93c1-260cdb19ebcb	740b55fc-1887-4d89-b81a-f9b172e03bb1	15	42675808	42675808	T	G	SNP	SPG11	NM_025137	human	genbank	54_36p	-1	reviewed	missense	c.4199	p.Q1400P	0.996	NULL	PatternScan_GLYCOSYL_HYDROL_F1_1	-	no_errors
ZNF662	389114	genome.wustl.edu	36	3	42931003	42931003	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-29-1770-01A-01W-0633-09	TCGA-29-1770-10A-01W-0634-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	b0cc31dd-6efe-421d-93c1-260cdb19ebcb	740b55fc-1887-4d89-b81a-f9b172e03bb1	3	42931003	42931003	G	T	SNP	ZNF662	NM_207404	human	genbank	54_36p	+1	validated	missense	c.434	p.G145V	0.000	NULL	superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
LOC644589	644589	genome.wustl.edu	36	14	44829155	44829155	+	RNA	SNP	C	C	G	novel	unknown	TCGA-29-1770-01A-01W-0633-09	TCGA-29-1770-10A-01W-0634-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	b0cc31dd-6efe-421d-93c1-260cdb19ebcb	740b55fc-1887-4d89-b81a-f9b172e03bb1	14	44829155	44829155	C	G	SNP	LOC644589	XR_038836	human	genbank	54_36p	+1	model	rna	NULL	NULL	1.000	-	-	-	pseudogene
LTBP4	8425	genome.wustl.edu	36	19	45821357	45821357	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-29-1770-01A-01W-0633-09	TCGA-29-1770-10A-01W-0634-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	b0cc31dd-6efe-421d-93c1-260cdb19ebcb	740b55fc-1887-4d89-b81a-f9b172e03bb1	19	45821357	45821357	G	A	SNP	LTBP4	ENST00000308370	human	ensembl	54_36p	+1	known	missense	c.3763	p.E1255K	1.000	PatternScan_EGF_CA,HMMPfam_EGF_CA,HMMSmart_EGF_CA,superfamily_SSF57196	superfamily_SSF57196,HMMSmart_EGF,HMMPfam_EGF,PatternScan_EGF_1,superfamily_Fibril-assoc,HMMPfam_TB,PatternScan_EGF_CA,HMMPfam_EGF_CA,HMMSmart_EGF_CA,PatternScan_ASX_HYDROXYL,PatternScan_EGF_2,superfamily_Grow_fac_recept	-	no_errors
ARHGEF1	9138	genome.wustl.edu	36	19	47101806	47101806	+	Silent	SNP	G	G	A	novel	unknown	TCGA-29-1770-01A-01W-0633-09	TCGA-29-1770-10A-01W-0634-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	b0cc31dd-6efe-421d-93c1-260cdb19ebcb	740b55fc-1887-4d89-b81a-f9b172e03bb1	19	47101806	47101806	G	A	SNP	ARHGEF1	NM_199002	human	genbank	54_36p	+1	reviewed	silent	c.2436	p.T812	0.523	NULL	HMMPfam_RGS-like,superfamily_Regulat_G_prot_signal_superfam,superfamily_DH-domain,HMMPfam_RhoGEF,HMMSmart_RhoGEF,superfamily_SSF50729,HMMSmart_PH	-	no_errors
C6orf138	442213	genome.wustl.edu	36	6	48084560	48084560	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-29-1770-01A-01W-0633-09	TCGA-29-1770-10A-01W-0634-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	b0cc31dd-6efe-421d-93c1-260cdb19ebcb	740b55fc-1887-4d89-b81a-f9b172e03bb1	6	48084560	48084560	A	T	SNP	C6orf138	NM_001013732	human	genbank	54_36p	-1	validated	missense	c.625	p.F209I	1.000	HMMPfam_Patched,superfamily_SSF82866	HMMPfam_Patched,superfamily_SSF82866	-	no_errors
TFAP2B	7021	genome.wustl.edu	36	6	50918784	50918784	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-29-1770-01A-01W-0633-09	TCGA-29-1770-10A-01W-0634-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	b0cc31dd-6efe-421d-93c1-260cdb19ebcb	740b55fc-1887-4d89-b81a-f9b172e03bb1	6	50918784	50918784	C	T	SNP	TFAP2B	NM_003221	human	genbank	54_36p	+1	reviewed	missense	c.1103	p.T368M	1.000	HMMPfam_TF_AP-2	HMMPfam_TF_AP-2	-	no_errors
PNMAL2	0	genome.wustl.edu	36	19	51689384	51689384	+	Silent	SNP	C	C	T	novel	unknown	TCGA-29-1770-01A-01W-0633-09	TCGA-29-1770-10A-01W-0634-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	b0cc31dd-6efe-421d-93c1-260cdb19ebcb	740b55fc-1887-4d89-b81a-f9b172e03bb1	19	51689384	51689384	C	T	SNP	PNMAL2	NM_020709	human	genbank	54_36p	-1	validated	silent	c.1179	p.A393	0.035	NULL	NULL	-	no_errors
RGS20	8601	genome.wustl.edu	36	8	55033511	55033511	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-29-1770-01A-01W-0633-09	TCGA-29-1770-10A-01W-0634-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	b0cc31dd-6efe-421d-93c1-260cdb19ebcb	740b55fc-1887-4d89-b81a-f9b172e03bb1	8	55033511	55033511	G	C	SNP	RGS20	NM_170587	human	genbank	54_36p	+1	validated	missense	c.1107	p.M369I	1.000	superfamily_Regulator of G-protein signaling RGS,HMMPfam_RGS,HMMSmart_SM00315	superfamily_Regulator of G-protein signaling RGS,HMMPfam_RGS,HMMSmart_SM00315	-	no_errors
OR8I2	120586	genome.wustl.edu	36	11	55618199	55618199	+	Silent	SNP	C	C	T	novel	unknown	TCGA-29-1770-01A-01W-0633-09	TCGA-29-1770-10A-01W-0634-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	b0cc31dd-6efe-421d-93c1-260cdb19ebcb	740b55fc-1887-4d89-b81a-f9b172e03bb1	11	55618199	55618199	C	T	SNP	OR8I2	NM_001003750	human	genbank	54_36p	+1	provisional	silent	c.840	p.V280	0.875	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
SIGLEC8	27181	genome.wustl.edu	36	19	56650556	56650556	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-29-1770-01A-01W-0633-09	TCGA-29-1770-10A-01W-0634-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	b0cc31dd-6efe-421d-93c1-260cdb19ebcb	740b55fc-1887-4d89-b81a-f9b172e03bb1	19	56650556	56650556	T	A	SNP	SIGLEC8	NM_014442	human	genbank	54_36p	-1	validated	missense	c.979	p.T327S	0.419	superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig	superfamily_Immunoglobulin,HMMPfam_V-set,HMMSmart_SM00409,HMMPfam_C2-set_2,HMMSmart_SM00408,HMMPfam_ig	-	no_errors
TNKS1BP1	85456	genome.wustl.edu	36	11	56824958	56824958	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-29-1770-01A-01W-0633-09	TCGA-29-1770-10A-01W-0634-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	b0cc31dd-6efe-421d-93c1-260cdb19ebcb	740b55fc-1887-4d89-b81a-f9b172e03bb1	11	56824958	56824958	G	A	SNP	TNKS1BP1	NM_033396	human	genbank	54_36p	-1	validated	missense	c.5105	p.P1702L	0.999	NULL	NULL	-	no_errors
ZNF831	128611	genome.wustl.edu	36	20	57204379	57204379	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-29-1770-01A-01W-0633-09	TCGA-29-1770-10A-01W-0634-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	b0cc31dd-6efe-421d-93c1-260cdb19ebcb	740b55fc-1887-4d89-b81a-f9b172e03bb1	20	57204379	57204379	A	G	SNP	ZNF831	NM_178457	human	genbank	54_36p	+1	provisional	missense	c.3799	p.K1267E	0.989	NULL	superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
DAB1	1600	genome.wustl.edu	36	1	57249459	57249459	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-29-1770-01A-01W-0633-09	TCGA-29-1770-10A-01W-0634-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	b0cc31dd-6efe-421d-93c1-260cdb19ebcb	740b55fc-1887-4d89-b81a-f9b172e03bb1	1	57249459	57249459	C	A	SNP	DAB1	NM_021080	human	genbank	54_36p	-1	reviewed	missense	c.1519	p.D507Y	1.000	NULL	superfamily_PH domain-like,HMMSmart_SM00462,HMMPfam_PID	-	no_errors
C20orf177	63939	genome.wustl.edu	36	20	57952905	57952905	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-29-1770-01A-01W-0633-09	TCGA-29-1770-10A-01W-0634-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	b0cc31dd-6efe-421d-93c1-260cdb19ebcb	740b55fc-1887-4d89-b81a-f9b172e03bb1	20	57952905	57952905	T	G	SNP	C20orf177	NM_022106	human	genbank	54_36p	+1	predicted	missense	c.512	p.V171G	0.000	NULL	NULL	-	no_errors
ZP1	22917	genome.wustl.edu	36	11	60397763	60397763	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-29-1770-01A-01W-0633-09	TCGA-29-1770-10A-01W-0634-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	b0cc31dd-6efe-421d-93c1-260cdb19ebcb	740b55fc-1887-4d89-b81a-f9b172e03bb1	11	60397763	60397763	G	A	SNP	ZP1	NM_207341	human	genbank	54_36p	+1	validated	missense	c.1511	p.R504Q	1.000	HMMPfam_Zona_pellucida,HMMSmart_ZP	superfamily_P_trefoil,PatternScan_P_TREFOIL,HMMPfam_Zona_pellucida,HMMSmart_ZP,PatternScan_ZP_1	-	no_errors
DIDO1	11083	genome.wustl.edu	36	20	61013010	61013010	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-29-1770-01A-01W-0633-09	TCGA-29-1770-10A-01W-0634-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	b0cc31dd-6efe-421d-93c1-260cdb19ebcb	740b55fc-1887-4d89-b81a-f9b172e03bb1	20	61013010	61013010	C	G	SNP	DIDO1	NM_033081	human	genbank	54_36p	-1	reviewed	missense	c.400	p.E134Q	0.239	NULL	HMMSmart_SM00249,HMMPfam_TFIIS_M,superfamily_Elongation factor TFIIS domain 2,superfamily_FYVE/PHD zinc finger,HMMPfam_SPOC,HMMSmart_SM00510,PatternScan_ZF_PHD_1,HMMPfam_PHD	-	no_errors
ESR2	2100	genome.wustl.edu	36	14	63805266	63805266	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-29-1770-01A-01W-0633-09	TCGA-29-1770-10A-01W-0634-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	b0cc31dd-6efe-421d-93c1-260cdb19ebcb	740b55fc-1887-4d89-b81a-f9b172e03bb1	14	63805266	63805266	C	A	SNP	ESR2	NM_001437	human	genbank	54_36p	-1	reviewed	missense	c.652	p.G218C	1.000	superfamily_Glucocorticoid receptor-like (DNA-binding domain),HMMPfam_zf-C4,superfamily_Nuclear receptor ligand-binding domain	HMMSmart_SM00399,superfamily_Glucocorticoid receptor-like (DNA-binding domain),HMMPfam_zf-C4,PatternScan_NUCLEAR_REC_DBD_1,superfamily_Nuclear receptor ligand-binding domain,HMMSmart_SM00430,HMMPfam_Hormone_recep	-	no_errors
ELMO3	79767	genome.wustl.edu	36	16	65790763	65790763	+	Silent	SNP	C	T	T	novel	unknown	TCGA-29-1770-01A-01W-0633-09	TCGA-29-1770-10A-01W-0634-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	b0cc31dd-6efe-421d-93c1-260cdb19ebcb	740b55fc-1887-4d89-b81a-f9b172e03bb1	16	65790763	65790763	C	T	SNP	ELMO3	NM_024712	human	genbank	54_36p	+1	reviewed	silent	c.192	p.A64	0.994	NULL	HMMPfam_ELMO_CED12,superfamily_SSF50729,HMMSmart_PH	-	no_errors
HYDIN	54768	genome.wustl.edu	36	16	69616823	69616823	+	Silent	SNP	C	C	T	novel	unknown	TCGA-29-1770-01A-01W-0633-09	TCGA-29-1770-10A-01W-0634-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	b0cc31dd-6efe-421d-93c1-260cdb19ebcb	740b55fc-1887-4d89-b81a-f9b172e03bb1	16	69616823	69616823	C	T	SNP	HYDIN	NM_032821	human	genbank	54_36p	-1	validated	silent	c.3150	p.Q1050	0.509	NULL	superfamily_PapD-like,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
MYO9A	4649	genome.wustl.edu	36	15	69957471	69957471	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-29-1770-01A-01W-0633-09	TCGA-29-1770-10A-01W-0634-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	b0cc31dd-6efe-421d-93c1-260cdb19ebcb	740b55fc-1887-4d89-b81a-f9b172e03bb1	15	69957471	69957471	C	T	SNP	MYO9A	NM_006901	human	genbank	54_36p	-1	validated	missense	c.5895	p.M1965I	1.000	superfamily_Cysteine-rich domain	HMMPfam_RA,HMMSmart_SM00314,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00242,HMMPfam_Myosin_head,HMMSmart_SM00015,HMMPfam_IQ,superfamily_Cysteine-rich domain,HMMSmart_SM00109,PatternScan_ZF_DAG_PE_1,HMMPfam_C1_1,superfamily_GTPase activation domain GAP,HMMSmart_SM00324,HMMPfam_RhoGAP	-	no_errors
MAMDC2	256691	genome.wustl.edu	36	9	71848950	71848950	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-29-1770-01A-01W-0633-09	TCGA-29-1770-10A-01W-0634-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	b0cc31dd-6efe-421d-93c1-260cdb19ebcb	740b55fc-1887-4d89-b81a-f9b172e03bb1	9	71848950	71848950	T	C	SNP	MAMDC2	NM_153267	human	genbank	54_36p	+1	validated	missense	c.17	p.V6A	0.618	NULL	HMMSmart_SM00137,HMMPfam_MAM,PatternScan_MAM_1	-	no_errors
RAB11FIP5	26056	genome.wustl.edu	36	2	73168956	73168956	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-29-1770-01A-01W-0633-09	TCGA-29-1770-10A-01W-0634-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	b0cc31dd-6efe-421d-93c1-260cdb19ebcb	740b55fc-1887-4d89-b81a-f9b172e03bb1	2	73168956	73168956	G	A	SNP	RAB11FIP5	NM_015470	human	genbank	54_36p	-1	validated	missense	c.1298	p.P433L	0.904	NULL	superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_C2,HMMPfam_RBD-FIP	-	no_errors
ENSG00000187812	0	genome.wustl.edu	36	15	73862618	73862618	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-29-1770-01A-01W-0633-09	TCGA-29-1770-10A-01W-0634-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	b0cc31dd-6efe-421d-93c1-260cdb19ebcb	740b55fc-1887-4d89-b81a-f9b172e03bb1	15	73862618	73862618	G	T	SNP	ENSG00000187812	ENST00000345070	human	ensembl	54_36p	+1	known	missense	c.236	p.W79L	0.537	NULL	NULL	-	no_start_codon:no_stop_codon
XRRA1	143570	genome.wustl.edu	36	11	74233899	74233899	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-29-1770-01A-01W-0633-09	TCGA-29-1770-10A-01W-0634-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	b0cc31dd-6efe-421d-93c1-260cdb19ebcb	740b55fc-1887-4d89-b81a-f9b172e03bb1	11	74233899	74233899	C	A	SNP	XRRA1	NM_182969	human	genbank	54_36p	-1	validated	missense	c.1770	p.K590N	0.000	NULL	superfamily_L domain-like,HMMSmart_SM00369,HMMPfam_LRR_1	-	no_errors
AUP1	550	genome.wustl.edu	36	2	74608122	74608122	+	Silent	SNP	G	G	A	novel	unknown	TCGA-29-1770-01A-01W-0633-09	TCGA-29-1770-10A-01W-0634-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	b0cc31dd-6efe-421d-93c1-260cdb19ebcb	740b55fc-1887-4d89-b81a-f9b172e03bb1	2	74608122	74608122	G	A	SNP	AUP1	NM_181575	human	genbank	54_36p	-1	reviewed	silent	c.945	p.V315	1.000	HMMPfam_CUE,HMMSmart_CUE	HMMSmart_PlsC,HMMPfam_CUE,HMMSmart_CUE	-	no_errors
RNF213	57674	genome.wustl.edu	36	17	75946798	75946798	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-29-1770-01A-01W-0633-09	TCGA-29-1770-10A-01W-0634-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	b0cc31dd-6efe-421d-93c1-260cdb19ebcb	740b55fc-1887-4d89-b81a-f9b172e03bb1	17	75946798	75946798	T	A	SNP	RNF213	NM_020914	human	genbank	54_36p	+1	validated	missense	c.5197	p.W1733R	0.904	NULL	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,superfamily_RING/U-box,HMMSmart_SM00184,HMMPfam_zf-C3HC4	-	no_errors
LOC400406	400406	genome.wustl.edu	36	15	76056754	76056754	+	RNA	SNP	G	G	A	novel	unknown	TCGA-29-1770-01A-01W-0633-09	TCGA-29-1770-10A-01W-0634-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	b0cc31dd-6efe-421d-93c1-260cdb19ebcb	740b55fc-1887-4d89-b81a-f9b172e03bb1	15	76056754	76056754	G	A	SNP	LOC400406	XR_042358	human	genbank	54_36p	+1	model	rna	NULL	NULL	0.997	-	-	-	pseudogene
E2F5	1875	genome.wustl.edu	36	8	86308722	86308722	+	Nonsense_Mutation	SNP	A	A	T	novel	unknown	TCGA-29-1770-01A-01W-0633-09	TCGA-29-1770-10A-01W-0634-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	b0cc31dd-6efe-421d-93c1-260cdb19ebcb	740b55fc-1887-4d89-b81a-f9b172e03bb1	8	86308722	86308722	A	T	SNP	E2F5	NM_001951	human	genbank	54_36p	+1	reviewed	nonsense	c.709	p.K237*	0.998	NULL	superfamily_SSF46785,HMMPfam_E2F_TDP	-	no_errors
KIAA1324L	222223	genome.wustl.edu	36	7	86360313	86360313	+	Nonsense_Mutation	SNP	T	T	A	novel	unknown	TCGA-29-1770-01A-01W-0633-09	TCGA-29-1770-10A-01W-0634-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	b0cc31dd-6efe-421d-93c1-260cdb19ebcb	740b55fc-1887-4d89-b81a-f9b172e03bb1	7	86360313	86360313	T	A	SNP	KIAA1324L	NM_152748	human	genbank	54_36p	-1	validated	nonsense	c.2005	p.K669*	1.000	NULL	HMMPfam_NCD3G,superfamily_Grow_fac_recept,superfamily_Man6php_recept	-	no_errors
SLITRK5	26050	genome.wustl.edu	36	13	87127589	87127589	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-29-1770-01A-01W-0633-09	TCGA-29-1770-10A-01W-0634-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	b0cc31dd-6efe-421d-93c1-260cdb19ebcb	740b55fc-1887-4d89-b81a-f9b172e03bb1	13	87127589	87127589	C	T	SNP	SLITRK5	NM_015567	human	genbank	54_36p	+1	validated	missense	c.1945	p.P649S	0.998	NULL	superfamily_L domain-like,HMMSmart_SM00369,HMMPfam_LRR_1,HMMSmart_SM00082,HMMPfam_LRRNT	-	no_errors
COX8C	341947	genome.wustl.edu	36	14	92884181	92884181	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-29-1770-01A-01W-0633-09	TCGA-29-1770-10A-01W-0634-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	b0cc31dd-6efe-421d-93c1-260cdb19ebcb	740b55fc-1887-4d89-b81a-f9b172e03bb1	14	92884181	92884181	T	C	SNP	COX8C	NM_182971	human	genbank	54_36p	+1	validated	missense	c.181	p.Y61H	0.003	HMMPfam_COX8,superfamily_Cyt_c_oxidase_8	HMMPfam_COX8,superfamily_Cyt_c_oxidase_8	-	no_errors
PPP4R4	57718	genome.wustl.edu	36	14	93782544	93782544	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-29-1770-01A-01W-0633-09	TCGA-29-1770-10A-01W-0634-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	b0cc31dd-6efe-421d-93c1-260cdb19ebcb	740b55fc-1887-4d89-b81a-f9b172e03bb1	14	93782544	93782544	A	T	SNP	PPP4R4	NM_058237	human	genbank	54_36p	+1	reviewed	missense	c.1526	p.K509I	0.992	superfamily_ARM repeat	superfamily_ARM repeat,HMMPfam_HEAT	-	no_errors
BDKRB2	624	genome.wustl.edu	36	14	95776893	95776893	+	Silent	SNP	C	C	T	novel	unknown	TCGA-29-1770-01A-01W-0633-09	TCGA-29-1770-10A-01W-0634-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	b0cc31dd-6efe-421d-93c1-260cdb19ebcb	740b55fc-1887-4d89-b81a-f9b172e03bb1	14	95776893	95776893	C	T	SNP	BDKRB2	NM_000623	human	genbank	54_36p	+1	reviewed	silent	c.475	p.L159	0.995	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
FILIP1L	11259	genome.wustl.edu	36	3	101052248	101052248	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-29-1770-01A-01W-0633-09	TCGA-29-1770-10A-01W-0634-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	b0cc31dd-6efe-421d-93c1-260cdb19ebcb	740b55fc-1887-4d89-b81a-f9b172e03bb1	3	101052248	101052248	C	T	SNP	FILIP1L	NM_182909	human	genbank	54_36p	-1	validated	missense	c.962	p.R321H	1.000	HMMPfam_CortBP2,superfamily_Prefoldin	HMMPfam_CortBP2,superfamily_Prefoldin	-	no_errors
NXF4	55999	genome.wustl.edu	36	X	101691770	101691770	+	Splice_Site	SNP	G	G	A	novel	unknown	TCGA-29-1770-01A-01W-0633-09	TCGA-29-1770-10A-01W-0634-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	b0cc31dd-6efe-421d-93c1-260cdb19ebcb	740b55fc-1887-4d89-b81a-f9b172e03bb1	X	101691770	101691770	G	A	SNP	NXF4	ENST00000360035	human	ensembl	54_36p	+1	known	splice_site	c.1+1	e0+1	0.978	-	-	-	no_errors
IL1R2	7850	genome.wustl.edu	36	2	102007525	102007525	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-29-1770-01A-01W-0633-09	TCGA-29-1770-10A-01W-0634-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	b0cc31dd-6efe-421d-93c1-260cdb19ebcb	740b55fc-1887-4d89-b81a-f9b172e03bb1	2	102007525	102007525	G	A	SNP	IL1R2	NM_004633	human	genbank	54_36p	+1	reviewed	missense	c.850	p.A284T	0.572	superfamily_SSF48726,HMMSmart_IG,HMMPfam_ig	superfamily_SSF48726,HMMSmart_IG,HMMPfam_ig	-	no_errors
LHFPL3	375612	genome.wustl.edu	36	7	103756643	103756643	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-29-1770-01A-01W-0633-09	TCGA-29-1770-10A-01W-0634-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	b0cc31dd-6efe-421d-93c1-260cdb19ebcb	740b55fc-1887-4d89-b81a-f9b172e03bb1	7	103756643	103756643	G	A	SNP	LHFPL3	NM_199000	human	genbank	54_36p	+1	reviewed	nonsense	c.180	p.W60*	1.000	HMMPfam_L_HGMIC_fpl	HMMPfam_L_HGMIC_fpl	-	no_errors
BRF1	2972	genome.wustl.edu	36	14	104793820	104793820	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-29-1770-01A-01W-0633-09	TCGA-29-1770-10A-01W-0634-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	b0cc31dd-6efe-421d-93c1-260cdb19ebcb	740b55fc-1887-4d89-b81a-f9b172e03bb1	14	104793820	104793820	T	C	SNP	BRF1	ENST00000345053	human	ensembl	54_36p	-1	known	missense	c.551	p.Y184C	0.001	NULL	HMMPfam_TFIIB_Zn_Ribbon,superfamily_Zinc beta-ribbon,superfamily_Cyclin-like,HMMSmart_SM00385,HMMPfam_TFIIB	-	no_errors
ENSG00000220279	0	genome.wustl.edu	36	8	105463319	105463319	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-29-1770-01A-01W-0633-09	TCGA-29-1770-10A-01W-0634-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	b0cc31dd-6efe-421d-93c1-260cdb19ebcb	740b55fc-1887-4d89-b81a-f9b172e03bb1	8	105463319	105463319	G	A	SNP	ENSG00000220279	ENST00000404280	human	ensembl	54_36p	-1	known	missense	c.106	p.P36S	0.001	NULL	NULL	-	no_errors
ZC3H12C	85463	genome.wustl.edu	36	11	109540580	109540580	+	Silent	SNP	C	C	G	novel	unknown	TCGA-29-1770-01A-01W-0633-09	TCGA-29-1770-10A-01W-0634-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	b0cc31dd-6efe-421d-93c1-260cdb19ebcb	740b55fc-1887-4d89-b81a-f9b172e03bb1	11	109540580	109540580	C	G	SNP	ZC3H12C	NM_033390	human	genbank	54_36p	+1	validated	silent	c.1560	p.S520	0.990	NULL	NULL	-	no_errors
LOC149620	149620	genome.wustl.edu	36	1	111626469	111626469	+	RNA	SNP	T	T	A	novel	unknown	TCGA-29-1770-01A-01W-0633-09	TCGA-29-1770-10A-01W-0634-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	b0cc31dd-6efe-421d-93c1-260cdb19ebcb	740b55fc-1887-4d89-b81a-f9b172e03bb1	1	111626469	111626469	T	A	SNP	LOC149620	NR_003928	human	genbank	54_36p	+1	provisional	rna	NULL	NULL	0.000	-	-	-	pseudogene
CSMD3	114788	genome.wustl.edu	36	8	113328475	113328475	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-29-1770-01A-01W-0633-09	TCGA-29-1770-10A-01W-0634-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	b0cc31dd-6efe-421d-93c1-260cdb19ebcb	740b55fc-1887-4d89-b81a-f9b172e03bb1	8	113328475	113328475	C	T	SNP	CSMD3	NM_198123	human	genbank	54_36p	-1	validated	missense	c.10172	p.R3391H	0.544	superfamily_Complement control module/SCR domain,HMMPfam_Sushi,HMMSmart_SM00032	superfamily_Spermadhesin CUB domain,HMMPfam_CUB,HMMSmart_SM00042,superfamily_Complement control module/SCR domain,HMMPfam_Sushi,HMMSmart_SM00032,PatternScan_GLYCOSYL_HYDROL_F10	-	no_errors
USP2	9099	genome.wustl.edu	36	11	118749076	118749076	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-29-1770-01A-01W-0633-09	TCGA-29-1770-10A-01W-0634-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	b0cc31dd-6efe-421d-93c1-260cdb19ebcb	740b55fc-1887-4d89-b81a-f9b172e03bb1	11	118749076	118749076	C	T	SNP	USP2	NM_004205	human	genbank	54_36p	-1	validated	missense	c.325	p.G109R	0.998	NULL	superfamily_Cysteine proteinases,HMMPfam_UCH,PatternScan_UCH_2_1,PatternScan_UCH_2_2	-	no_errors
DMBT1	1755	genome.wustl.edu	36	10	124385624	124385624	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-29-1770-01A-01W-0633-09	TCGA-29-1770-10A-01W-0634-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	b0cc31dd-6efe-421d-93c1-260cdb19ebcb	740b55fc-1887-4d89-b81a-f9b172e03bb1	10	124385624	124385624	A	C	SNP	DMBT1	NM_007329	human	genbank	54_36p	+1	reviewed	missense	c.6289	p.I2097L	0.088	superfamily_Spermadhesin CUB domain,HMMPfam_CUB,HMMSmart_SM00042	superfamily_SRCR-like,HMMSmart_SM00202,HMMPfam_SRCR,PatternScan_SRCR_1,superfamily_Spermadhesin CUB domain,HMMPfam_CUB,HMMSmart_SM00042,HMMPfam_Zona_pellucida,HMMSmart_SM00241,PatternScan_ZP_1	-	no_errors
ATAD2	29028	genome.wustl.edu	36	8	124426334	124426334	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-29-1770-01A-01W-0633-09	TCGA-29-1770-10A-01W-0634-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	b0cc31dd-6efe-421d-93c1-260cdb19ebcb	740b55fc-1887-4d89-b81a-f9b172e03bb1	8	124426334	124426334	C	G	SNP	ATAD2	NM_014109	human	genbank	54_36p	-1	reviewed	missense	c.2689	p.D897H	0.996	superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMPfam_YL1,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_AAA,PatternScan_AAA,superfamily_Bromodomain,HMMSmart_SM00297,HMMPfam_Bromodomain	-	no_errors
BCORL1	63035	genome.wustl.edu	36	X	128977131	128977131	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-29-1770-01A-01W-0633-09	TCGA-29-1770-10A-01W-0634-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	b0cc31dd-6efe-421d-93c1-260cdb19ebcb	740b55fc-1887-4d89-b81a-f9b172e03bb1	X	128977131	128977131	C	T	SNP	BCORL1	NM_021946	human	genbank	54_36p	+1	validated	missense	c.2702	p.P901L	0.001	NULL	superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank	-	no_errors
LCN12	286256	genome.wustl.edu	36	9	138967193	138967193	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-29-1770-01A-01W-0633-09	TCGA-29-1770-10A-01W-0634-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	b0cc31dd-6efe-421d-93c1-260cdb19ebcb	740b55fc-1887-4d89-b81a-f9b172e03bb1	9	138967193	138967193	T	G	SNP	LCN12	NM_178536	human	genbank	54_36p	+1	validated	missense	c.143	p.L48R	0.469	superfamily_Lipocalins,HMMPfam_Lipocalin	superfamily_Lipocalins,HMMPfam_Lipocalin	-	no_errors
PIK3CB	5291	genome.wustl.edu	36	3	139960866	139960866	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-29-1770-01A-01W-0633-09	TCGA-29-1770-10A-01W-0634-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	b0cc31dd-6efe-421d-93c1-260cdb19ebcb	740b55fc-1887-4d89-b81a-f9b172e03bb1	3	139960866	139960866	T	A	SNP	PIK3CB	NM_006219	human	genbank	54_36p	-1	provisional	missense	c.10	p.S4C	0.012	NULL	HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B,superfamily_SSF54236,HMMPfam_PI3K_rbd,HMMSmart_PI3K_rbd,HMMSmart_PI3K_C2,superfamily_C2_CaLB,HMMPfam_PI3K_C2,superfamily_ARM-type_fold,HMMSmart_PI3Ka,HMMPfam_PI3Ka,superfamily_Kinase_like,HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2	-	no_errors
SR140	23350	genome.wustl.edu	36	3	144212377	144212377	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-29-1770-01A-01W-0633-09	TCGA-29-1770-10A-01W-0634-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	b0cc31dd-6efe-421d-93c1-260cdb19ebcb	740b55fc-1887-4d89-b81a-f9b172e03bb1	3	144212377	144212377	T	C	SNP	SR140	NM_001080415	human	genbank	54_36p	+1	provisional	missense	c.76	p.S26P	1.000	NULL	superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1,superfamily_Surp module (SWAP domain Pfam 01805),HMMSmart_SM00648,HMMPfam_Surp,superfamily_ENTH/VHS domain,HMMSmart_SM00582	-	no_errors
CSF1R	1436	genome.wustl.edu	36	5	149415833	149415833	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-29-1770-01A-01W-0633-09	TCGA-29-1770-10A-01W-0634-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	b0cc31dd-6efe-421d-93c1-260cdb19ebcb	740b55fc-1887-4d89-b81a-f9b172e03bb1	5	149415833	149415833	G	A	SNP	CSF1R	NM_005211	human	genbank	54_36p	-1	reviewed	nonsense	c.2503	p.Q835*	1.000	superfamily_Kinase_like,HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc	HMMPfam_V-set,superfamily_SSF48726,HMMSmart_IG,HMMSmart_IGc2,HMMPfam_ig,superfamily_Kinase_like,HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,PatternScan_PROTEIN_KINASE_ATP,PatternScan_RECEPTOR_TYR_KIN_III,PatternScan_PROTEIN_KINASE_TYR	-	no_errors
AQP10	89872	genome.wustl.edu	36	1	152563499	152563499	+	Silent	SNP	T	T	A	novel	unknown	TCGA-29-1770-01A-01W-0633-09	TCGA-29-1770-10A-01W-0634-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	b0cc31dd-6efe-421d-93c1-260cdb19ebcb	740b55fc-1887-4d89-b81a-f9b172e03bb1	1	152563499	152563499	T	A	SNP	AQP10	NM_080429	human	genbank	54_36p	+1	reviewed	silent	c.825	p.A275	0.260	NULL	HMMPfam_MIP,superfamily_Aquaporin-like,PatternScan_MIP	-	no_errors
AADAC	13	genome.wustl.edu	36	3	153028374	153028374	+	Silent	SNP	T	T	G	novel	unknown	TCGA-29-1770-01A-01W-0633-09	TCGA-29-1770-10A-01W-0634-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	b0cc31dd-6efe-421d-93c1-260cdb19ebcb	740b55fc-1887-4d89-b81a-f9b172e03bb1	3	153028374	153028374	T	G	SNP	AADAC	NM_001086	human	genbank	54_36p	+1	reviewed	silent	c.924	p.A308	0.000	superfamily_alpha/beta-Hydrolases,HMMPfam_Abhydrolase_3	superfamily_alpha/beta-Hydrolases,HMMPfam_Abhydrolase_3,PatternScan_LIPASE_GDXG_SER	-	no_errors
GHSR	2693	genome.wustl.edu	36	3	173648089	173648089	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-29-1770-01A-01W-0633-09	TCGA-29-1770-10A-01W-0634-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	b0cc31dd-6efe-421d-93c1-260cdb19ebcb	740b55fc-1887-4d89-b81a-f9b172e03bb1	3	173648089	173648089	C	T	SNP	GHSR	NM_004122	human	genbank	54_36p	-1	reviewed	missense	c.809	p.R270H	0.043	HMMPfam_7tm_1	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
LOC100128760	0	genome.wustl.edu	36	5	176625413	176625413	+	RNA	SNP	G	G	A	novel	unknown	TCGA-29-1770-01A-01W-0633-09	TCGA-29-1770-10A-01W-0634-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	b0cc31dd-6efe-421d-93c1-260cdb19ebcb	740b55fc-1887-4d89-b81a-f9b172e03bb1	5	176625413	176625413	G	A	SNP	LOC100128760	XR_038526	human	genbank	54_36p	-1	model	rna	NULL	NULL	1.000	-	-	-	pseudogene
TTN	7273	genome.wustl.edu	36	2	179144309	179144309	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-29-1770-01A-01W-0633-09	TCGA-29-1770-10A-01W-0634-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	b0cc31dd-6efe-421d-93c1-260cdb19ebcb	740b55fc-1887-4d89-b81a-f9b172e03bb1	2	179144309	179144309	T	C	SNP	TTN	NM_133378	human	genbank	54_36p	-1	reviewed	missense	c.67091	p.Q22364R	0.989	NULL	superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408,superfamily_Ypt/Rab-GAP domain of gyp1p,superfamily_beta-sandwich domain of Sec23/24,superfamily_vWA-like,HMMPfam_Titin_Z,HMMSmart_SM00406,PatternScan_IG_MHC,HMMPfam_PPAK,HMMPfam_ig,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3,PatternScan_RCC1_2	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region
CHRD	8646	genome.wustl.edu	36	3	185589421	185589421	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-29-1770-01A-01W-0633-09	TCGA-29-1770-10A-01W-0634-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	b0cc31dd-6efe-421d-93c1-260cdb19ebcb	740b55fc-1887-4d89-b81a-f9b172e03bb1	3	185589421	185589421	C	A	SNP	CHRD	NM_003741	human	genbank	54_36p	+1	reviewed	missense	c.2756	p.S919Y	0.904	HMMPfam_VWC,HMMSmart_SM00214	HMMPfam_VWC,HMMSmart_SM00214,HMMPfam_CHRD,HMMSmart_SM00754,PatternScan_VWFC_1	-	no_errors
MAP3K13	9175	genome.wustl.edu	36	3	186648386	186648386	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-29-1770-01A-01W-0633-09	TCGA-29-1770-10A-01W-0634-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	b0cc31dd-6efe-421d-93c1-260cdb19ebcb	740b55fc-1887-4d89-b81a-f9b172e03bb1	3	186648386	186648386	G	T	SNP	MAP3K13	NM_004721	human	genbank	54_36p	+1	reviewed	nonsense	c.967	p.E323*	1.000	superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMPfam_Pkinase,HMMSmart_SM00220	superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMPfam_Pkinase,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST	-	no_errors
LOC644214	644214	genome.wustl.edu	36	1	222111038	222111038	+	RNA	SNP	T	T	C	novel	unknown	TCGA-29-1770-01A-01W-0633-09	TCGA-29-1770-10A-01W-0634-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	b0cc31dd-6efe-421d-93c1-260cdb19ebcb	740b55fc-1887-4d89-b81a-f9b172e03bb1	1	222111038	222111038	T	C	SNP	LOC644214	XR_017064	human	genbank	54_36p	-1	model	rna	NULL	NULL	1.000	-	-	-	pseudogene
NLRP3	114548	genome.wustl.edu	36	1	245654249	245654249	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-29-1770-01A-01W-0633-09	TCGA-29-1770-10A-01W-0634-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	b0cc31dd-6efe-421d-93c1-260cdb19ebcb	740b55fc-1887-4d89-b81a-f9b172e03bb1	1	245654249	245654249	C	T	SNP	NLRP3	NM_001079821	human	genbank	54_36p	+1	reviewed	missense	c.881	p.P294L	0.001	HMMPfam_NACHT	superfamily_DEATH_like,HMMPfam_PAAD_DAPIN,HMMPfam_NACHT,superfamily_SSF52047,HMMSmart_LRR_RI,HMMPfam_LRR_1	-	no_errors
LOC100129261	0	genome.wustl.edu	36	19	17389023	17389032	+	RNA	DEL	TTTTTTTTTT	TTTTTTTTTT	-	novel	unknown	TCGA-29-1770-01A-01W-0633-09	TCGA-29-1770-10A-01W-0634-09	TTTTTTTTTT	TTTTTTTTTT					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	b0cc31dd-6efe-421d-93c1-260cdb19ebcb	740b55fc-1887-4d89-b81a-f9b172e03bb1	19	17389023	17389032	TTTTTTTTTT	-	DEL	LOC100129261	XR_039780	human	genbank	54_36p	-1	model	rna	NULL	NULL	0.966:0.965:0.965:0.965:0.965:0.965:0.966:0.966:0.967:0.969	-	-	(deletion:rna[17388737,17389128])	pseudogene
C20orf185	359710	genome.wustl.edu	36	20	31125059	31125070	+	In_Frame_Del	DEL	CCGTGGCATCCT	CCGTGGCATCCT	-	novel	unknown	TCGA-29-1770-01A-01W-0633-09	TCGA-29-1770-10A-01W-0634-09	CCGTGGCATCCT	CCGTGGCATCCT					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	b0cc31dd-6efe-421d-93c1-260cdb19ebcb	740b55fc-1887-4d89-b81a-f9b172e03bb1	20	31125059	31125070	CCGTGGCATCCT	-	DEL	C20orf185	NM_182658	human	genbank	54_36p	+1	provisional	in_frame_del	c.1418_1429	p.TVAS*473in_frame_delR	1.000:0.999:1.000:0.999:0.997:0.983:0.977:0.968:0.966:0.963:0.944:0.946	superfamily_Bactericidal_perm-incr_a/b_dom,HMMSmart_BPI2	PatternScan_LBP_BPI_CETP,superfamily_Bactericidal_perm-incr_a/b_dom,HMMSmart_BPI1,HMMPfam_LBP_BPI_CETP,HMMSmart_BPI2,HMMPfam_LBP_BPI_CETP_C	(deletion:cds_exon[31125043,31125072])	no_errors
FPGT	8790	genome.wustl.edu	36	1	74443849	74443854	+	In_Frame_Del	DEL	GGAACT	GGAACT	-	novel	unknown	TCGA-29-1770-01A-01W-0633-09	TCGA-29-1770-10A-01W-0634-09	GGAACT	GGAACT					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	b0cc31dd-6efe-421d-93c1-260cdb19ebcb	740b55fc-1887-4d89-b81a-f9b172e03bb1	1	74443849	74443854	GGAACT	-	DEL	FPGT	NM_003838	human	genbank	54_36p	+1	reviewed	in_frame_del	c.1530_1535	p.EL511in_frame_del	0.019:0.056:0.529:0.544:0.972:0.992	HMMPfam_Fucokinase	HMMPfam_Fucokinase	(deletion:cds_exon[74442663,74444104])	no_errors
FPGT	8790	genome.wustl.edu	36	1	74443858	74443873	+	Frame_Shift_Del	DEL	CTCTGGTAACAAGACA	CTCTGGTAACAAGACA	-	novel	unknown	TCGA-29-1770-01A-01W-0633-09	TCGA-29-1770-10A-01W-0634-09	CTCTGGTAACAAGACA	CTCTGGTAACAAGACA					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	b0cc31dd-6efe-421d-93c1-260cdb19ebcb	740b55fc-1887-4d89-b81a-f9b172e03bb1	1	74443858	74443873	CTCTGGTAACAAGACA	-	DEL	FPGT	NM_003838	human	genbank	54_36p	+1	reviewed	frame_shift_del	c.1539_1554	p.S514fs	1.000:1.000:1.000:0.997:0.998:0.995:0.705:0.736:0.455:0.217:0.186:0.081:0.010:0.001:0.000:0.000	HMMPfam_Fucokinase	HMMPfam_Fucokinase	(deletion:cds_exon[74442663,74444104])	no_errors
FRAS1	80144	genome.wustl.edu	36	4	79637127	79637128	+	In_Frame_Ins	INS	-	-	ATG	novel	unknown	TCGA-29-1770-01A-01W-0633-09	TCGA-29-1770-10A-01W-0634-09	-	-					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	b0cc31dd-6efe-421d-93c1-260cdb19ebcb	740b55fc-1887-4d89-b81a-f9b172e03bb1	4	79637127	79637128	-	ATG	INS	FRAS1	ENST00000380674	human	ensembl	54_36p	+1	known	in_frame_ins	c.9106_9107	p.3038in_frame_insD	1.000:1.000	HMMPfam_Calx-beta,HMMSmart_SM00237	HMMSmart_SM00214,HMMSmart_SM00215,PatternScan_VWFC_1,HMMPfam_VWC,superfamily_Growth factor receptor domain,HMMSmart_SM00261,HMMSmart_SM00181,HMMSmart_SM00237,HMMPfam_Calx-beta	-	no_errors
C9orf106	414318	genome.wustl.edu	36	9	131124252	131124252	+	Frame_Shift_Del	DEL	C	C	-	novel	unknown	TCGA-29-1770-01A-01W-0633-09	TCGA-29-1770-10A-01W-0634-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	b0cc31dd-6efe-421d-93c1-260cdb19ebcb	740b55fc-1887-4d89-b81a-f9b172e03bb1	9	131124252	131124252	C	-	DEL	C9orf106	NM_001012715	human	genbank	54_36p	+1	validated	frame_shift_del	c.339	p.P114fs	0.001	NULL	NULL	(deletion:cds_exon[131123914,131124612])	no_errors
FAM135B	51059	genome.wustl.edu	36	8	139276730	139276730	+	Frame_Shift_Del	DEL	C	C	-	novel	unknown	TCGA-29-1770-01A-01W-0633-09	TCGA-29-1770-10A-01W-0634-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	b0cc31dd-6efe-421d-93c1-260cdb19ebcb	740b55fc-1887-4d89-b81a-f9b172e03bb1	8	139276730	139276730	C	-	DEL	FAM135B	NM_015912	human	genbank	54_36p	-1	validated	frame_shift_del	c.826	p.A276fs	0.991	NULL	superfamily_alpha/beta-Hydrolases,HMMPfam_DUF676	(deletion:cds_exon[139276683,139276732])	no_errors
ENSG00000212309	0	genome.wustl.edu	36	2	202851130	202851131	+	RNA	INS	-	-	AAT	novel	unknown	TCGA-29-1770-01A-01W-0633-09	TCGA-29-1770-10A-01W-0634-09	-	-					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	b0cc31dd-6efe-421d-93c1-260cdb19ebcb	740b55fc-1887-4d89-b81a-f9b172e03bb1	2	202851130	202851131	-	AAT	INS	ENSG00000212309	ENST00000391007	human	ensembl	54_36p	+1	novel	rna	NULL	NULL	0.999:0.990	-	-	-	no_errors