Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID chromosome_name start stop reference variant type gene_name transcript_name transcript_species transcript_source transcript_version strand transcript_status trv_type c_position amino_acid_change ucsc_cons domain all_domains deletion_substructures transcript_error ZNF718 255403 genome.wustl.edu 36 4 145646 145646 + Nonsense_Mutation SNP G G A novel unknown TCGA-29-1778-01A-01W-0639-09 TCGA-29-1778-10A-01W-0639-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 5f8f37b5-2193-453e-bba2-665c56c297ae fa01b291-78e0-4b7f-97e6-0a2dea8296bd 4 145646 145646 G A SNP ZNF718 NM_001039127 human genbank 54_36p +1 provisional nonsense c.1169 p.W390* 1.000 NULL NULL - pseudogene:no_stop_codon:bad_bp_length_for_coding_region HBQ1 3049 genome.wustl.edu 36 16 171070 171070 + Missense_Mutation SNP G G A novel unknown TCGA-29-1778-01A-01W-0639-09 TCGA-29-1778-10A-01W-0639-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 5f8f37b5-2193-453e-bba2-665c56c297ae fa01b291-78e0-4b7f-97e6-0a2dea8296bd 16 171070 171070 G A SNP HBQ1 NM_005331 human genbank 54_36p +1 reviewed missense c.392 p.S131N 0.000 superfamily_Globin_like superfamily_Globin_like,HMMPfam_Globin - no_errors KRTAP5-5 439915 genome.wustl.edu 36 11 1608191 1608191 + Missense_Mutation SNP A A G novel unknown TCGA-29-1778-01A-01W-0639-09 TCGA-29-1778-10A-01W-0639-09 A A Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 5f8f37b5-2193-453e-bba2-665c56c297ae fa01b291-78e0-4b7f-97e6-0a2dea8296bd 11 1608191 1608191 A G SNP KRTAP5-5 NM_001001480 human genbank 54_36p +1 validated missense c.545 p.Y182C 0.439 NULL PatternScan_MOLYBDOPTERIN_PROK_1,PatternScan_2FE2S_FER_1 - no_errors LOC100128701 0 genome.wustl.edu 36 9 4934997 4934997 + RNA SNP C C T novel unknown TCGA-29-1778-01A-01W-0639-09 TCGA-29-1778-10A-01W-0639-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 5f8f37b5-2193-453e-bba2-665c56c297ae fa01b291-78e0-4b7f-97e6-0a2dea8296bd 9 4934997 4934997 C T SNP LOC100128701 XR_037797 human genbank 54_36p -1 model rna NULL NULL 0.020 - - - pseudogene TP53 7157 genome.wustl.edu 36 17 7518264 7518264 + Missense_Mutation SNP G G A novel unknown TCGA-29-1778-01A-01W-0639-09 TCGA-29-1778-10A-01W-0639-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 5f8f37b5-2193-453e-bba2-665c56c297ae fa01b291-78e0-4b7f-97e6-0a2dea8296bd 17 7518264 7518264 G A SNP TP53 NM_000546 human genbank 54_36p -1 reviewed missense c.742 p.R248W 1.000 HMMPfam_P53,superfamily_p53-like transcription factors,PatternScan_P53 HMMPfam_P53_TAD,HMMPfam_P53,superfamily_p53-like transcription factors,PatternScan_P53,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain - no_errors USP43 124739 genome.wustl.edu 36 17 9572056 9572056 + Missense_Mutation SNP C C T novel unknown TCGA-29-1778-01A-01W-0639-09 TCGA-29-1778-10A-01W-0639-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 5f8f37b5-2193-453e-bba2-665c56c297ae fa01b291-78e0-4b7f-97e6-0a2dea8296bd 17 9572056 9572056 C T SNP USP43 NM_153210 human genbank 54_36p +1 validated missense c.2396 p.A799V 0.009 NULL superfamily_SSF54001,HMMPfam_UCH,PatternScan_UCH_2_1,PatternScan_UCH_2_2 - no_errors ICAM4 3386 genome.wustl.edu 36 19 10259777 10259777 + Missense_Mutation SNP G G A novel unknown TCGA-29-1778-01A-01W-0639-09 TCGA-29-1778-10A-01W-0639-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 5f8f37b5-2193-453e-bba2-665c56c297ae fa01b291-78e0-4b7f-97e6-0a2dea8296bd 19 10259777 10259777 G A SNP ICAM4 NM_001039132 human genbank 54_36p +1 reviewed missense c.736 p.V246I 0.000 NULL HMMPfam_ICAM_N,superfamily_SSF48726 - no_errors MYH4 4622 genome.wustl.edu 36 17 10292012 10292012 + Silent SNP G G A novel unknown TCGA-29-1778-01A-01W-0639-09 TCGA-29-1778-10A-01W-0639-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 5f8f37b5-2193-453e-bba2-665c56c297ae fa01b291-78e0-4b7f-97e6-0a2dea8296bd 17 10292012 10292012 G A SNP MYH4 NM_017533 human genbank 54_36p -1 validated silent c.4813 p.L1605 0.996 HMMPfam_Myosin_tail_1 HMMPfam_Myosin_N,superfamily_SSF52540,HMMSmart_MYSc,HMMPfam_Myosin_head,HMMSmart_IQ,HMMPfam_Myosin_tail_1 - no_errors ANKRD28 23243 genome.wustl.edu 36 3 15753604 15753604 + Silent SNP G G A novel unknown TCGA-29-1778-01A-01W-0639-09 TCGA-29-1778-10A-01W-0639-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 5f8f37b5-2193-453e-bba2-665c56c297ae fa01b291-78e0-4b7f-97e6-0a2dea8296bd 3 15753604 15753604 G A SNP ANKRD28 NM_015199 human genbank 54_36p -1 provisional silent c.402 p.N134 1.000 superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank HMMSmart_SM00248,superfamily_Ankyrin repeat,HMMPfam_Ank - no_errors BZW2 28969 genome.wustl.edu 36 7 16671642 16671642 + Missense_Mutation SNP C C T novel unknown TCGA-29-1778-01A-01W-0639-09 TCGA-29-1778-10A-01W-0639-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 5f8f37b5-2193-453e-bba2-665c56c297ae fa01b291-78e0-4b7f-97e6-0a2dea8296bd 7 16671642 16671642 C T SNP BZW2 NM_014038 human genbank 54_36p +1 provisional missense c.49 p.R17W 0.999 NULL superfamily_ARM repeat,HMMSmart_SM00515,HMMPfam_W2 - no_errors MRGPRX4 117196 genome.wustl.edu 36 11 18151903 18151903 + Missense_Mutation SNP C C T novel unknown TCGA-29-1778-01A-01W-0639-09 TCGA-29-1778-10A-01W-0639-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 5f8f37b5-2193-453e-bba2-665c56c297ae fa01b291-78e0-4b7f-97e6-0a2dea8296bd 11 18151903 18151903 C T SNP MRGPRX4 NM_054032 human genbank 54_36p +1 provisional missense c.524 p.T175M 0.000 superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1 superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1 - no_errors ITPRIPL2 162073 genome.wustl.edu 36 16 19034826 19034826 + Silent SNP C C A novel unknown TCGA-29-1778-01A-01W-0639-09 TCGA-29-1778-10A-01W-0639-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 5f8f37b5-2193-453e-bba2-665c56c297ae fa01b291-78e0-4b7f-97e6-0a2dea8296bd 16 19034826 19034826 C A SNP ITPRIPL2 NM_001034841 human genbank 54_36p +1 validated silent c.1542 p.R514 0.996 NULL NULL - no_errors SLC24A3 57419 genome.wustl.edu 36 20 19209697 19209697 + Silent SNP C C T novel unknown TCGA-29-1778-01A-01W-0639-09 TCGA-29-1778-10A-01W-0639-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 5f8f37b5-2193-453e-bba2-665c56c297ae fa01b291-78e0-4b7f-97e6-0a2dea8296bd 20 19209697 19209697 C T SNP SLC24A3 NM_020689 human genbank 54_36p +1 validated silent c.237 p.A79 0.000 NULL HMMPfam_Na_Ca_ex - no_errors GABRB3 2562 genome.wustl.edu 36 15 24417690 24417690 + Missense_Mutation SNP C C T novel unknown TCGA-29-1778-01A-01W-0639-09 TCGA-29-1778-10A-01W-0639-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 5f8f37b5-2193-453e-bba2-665c56c297ae fa01b291-78e0-4b7f-97e6-0a2dea8296bd 15 24417690 24417690 C T SNP GABRB3 NM_000814 human genbank 54_36p -1 reviewed missense c.325 p.D109N 1.000 superfamily_Nicotinic receptor ligand binding domain-like,HMMPfam_Neur_chan_LBD superfamily_Nicotinic receptor ligand binding domain-like,HMMPfam_Neur_chan_LBD,PatternScan_NEUROTR_ION_CHANNEL,superfamily_Neurotransmitter-gated ion-channel transmembrane pore,HMMPfam_Neur_chan_memb - no_errors SNX17 9784 genome.wustl.edu 36 2 27452544 27452544 + Missense_Mutation SNP G G T novel unknown TCGA-29-1778-01A-01W-0639-09 TCGA-29-1778-10A-01W-0639-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 5f8f37b5-2193-453e-bba2-665c56c297ae fa01b291-78e0-4b7f-97e6-0a2dea8296bd 2 27452544 27452544 G T SNP SNX17 NM_014748 human genbank 54_36p +1 reviewed missense c.1172 p.S391I 1.000 NULL HMMPfam_PX,HMMSmart_PX,superfamily_PX,HMMPfam_FERM_M - no_errors IFT172 26160 genome.wustl.edu 36 2 27554518 27554518 + Missense_Mutation SNP T T C novel unknown TCGA-29-1778-01A-01W-0639-09 TCGA-29-1778-10A-01W-0639-09 T T Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 5f8f37b5-2193-453e-bba2-665c56c297ae fa01b291-78e0-4b7f-97e6-0a2dea8296bd 2 27554518 27554518 T C SNP IFT172 NM_015662 human genbank 54_36p -1 validated missense c.1015 p.K339E 1.000 superfamily_YVTN repeat-like/Quinoprotein amine dehydrogenase HMMSmart_SM00320,superfamily_WD40 repeat-like,superfamily_YVTN repeat-like/Quinoprotein amine dehydrogenase,superfamily_TPR-like,superfamily_HCP-like - no_errors LOC647211 647211 genome.wustl.edu 36 16 33308860 33308860 + RNA SNP T T G novel unknown TCGA-29-1778-01A-01W-0639-09 TCGA-29-1778-10A-01W-0639-09 T T Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 5f8f37b5-2193-453e-bba2-665c56c297ae fa01b291-78e0-4b7f-97e6-0a2dea8296bd 16 33308860 33308860 T G SNP LOC647211 XR_017499 human genbank 54_36p +1 model rna NULL NULL 0.999 - - - pseudogene C17orf98 388381 genome.wustl.edu 36 17 34251052 34251052 + Silent SNP C C T novel unknown TCGA-29-1778-01A-01W-0639-09 TCGA-29-1778-10A-01W-0639-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 5f8f37b5-2193-453e-bba2-665c56c297ae fa01b291-78e0-4b7f-97e6-0a2dea8296bd 17 34251052 34251052 C T SNP C17orf98 NM_001080465 human genbank 54_36p -1 validated silent c.117 p.A39 0.820 NULL NULL - no_errors CCIN 881 genome.wustl.edu 36 9 36160089 36160089 + Missense_Mutation SNP C C T novel unknown TCGA-29-1778-01A-01W-0639-09 TCGA-29-1778-10A-01W-0639-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 5f8f37b5-2193-453e-bba2-665c56c297ae fa01b291-78e0-4b7f-97e6-0a2dea8296bd 9 36160089 36160089 C T SNP CCIN NM_005893 human genbank 54_36p +1 reviewed missense c.590 p.A197V 0.970 HMMPfam_BACK superfamily_POZ domain,HMMPfam_BTB,HMMSmart_SM00225,HMMPfam_BACK,superfamily_Galactose oxidase central domain,HMMSmart_SM00612,HMMPfam_Kelch_1,PatternScan_MULTICOPPER_OXIDASE1 - no_errors RBM47 54502 genome.wustl.edu 36 4 40135314 40135314 + Nonsense_Mutation SNP G G C novel unknown TCGA-29-1778-01A-01W-0639-09 TCGA-29-1778-10A-01W-0639-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 5f8f37b5-2193-453e-bba2-665c56c297ae fa01b291-78e0-4b7f-97e6-0a2dea8296bd 4 40135314 40135314 G C SNP RBM47 NM_001098634 human genbank 54_36p -1 validated nonsense c.354 p.Y118* 1.000 superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1 superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1 - no_errors CDH4 1002 genome.wustl.edu 36 20 59861333 59861333 + Silent SNP C C T novel unknown TCGA-29-1778-01A-01W-0639-09 TCGA-29-1778-10A-01W-0639-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 5f8f37b5-2193-453e-bba2-665c56c297ae fa01b291-78e0-4b7f-97e6-0a2dea8296bd 20 59861333 59861333 C T SNP CDH4 NM_001794 human genbank 54_36p +1 reviewed silent c.861 p.D287 0.931 superfamily_Cadherin,HMMPfam_Cadherin superfamily_Cadherin,HMMPfam_Cadherin_pro,HMMPfam_Cadherin,HMMSmart_CA,PatternScan_CADHERIN_1,HMMPfam_Cadherin_C - no_errors LOC389740 389740 genome.wustl.edu 36 9 66256545 66256545 + RNA SNP G G T novel unknown TCGA-29-1778-01A-01W-0639-09 TCGA-29-1778-10A-01W-0639-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 5f8f37b5-2193-453e-bba2-665c56c297ae fa01b291-78e0-4b7f-97e6-0a2dea8296bd 9 66256545 66256545 G T SNP LOC389740 XR_016479 human genbank 54_36p -1 model rna NULL NULL 0.996 - - - pseudogene DTX2 113878 genome.wustl.edu 36 7 75964673 75964673 + Missense_Mutation SNP C C T novel unknown TCGA-29-1778-01A-01W-0639-09 TCGA-29-1778-10A-01W-0639-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 5f8f37b5-2193-453e-bba2-665c56c297ae fa01b291-78e0-4b7f-97e6-0a2dea8296bd 7 75964673 75964673 C T SNP DTX2 NM_001102594 human genbank 54_36p +1 validated missense c.1093 p.R365C 0.935 NULL HMMPfam_WWE,HMMSmart_SM00678,superfamily_RING/U-box,HMMSmart_SM00184,HMMPfam_zf-C3HC4 - no_errors ADNP2 22850 genome.wustl.edu 36 18 75995031 75995031 + Silent SNP A A G novel unknown TCGA-29-1778-01A-01W-0639-09 TCGA-29-1778-10A-01W-0639-09 A A Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 5f8f37b5-2193-453e-bba2-665c56c297ae fa01b291-78e0-4b7f-97e6-0a2dea8296bd 18 75995031 75995031 A G SNP ADNP2 NM_014913 human genbank 54_36p +1 validated silent c.744 p.R248 0.208 NULL superfamily_C2H2 and C2HC zinc fingers,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1,superfamily_Homeodomain-like,HMMSmart_SM00389 - no_errors CROT 54677 genome.wustl.edu 36 7 86849180 86849180 + Missense_Mutation SNP A A G novel unknown TCGA-29-1778-01A-01W-0639-09 TCGA-29-1778-10A-01W-0639-09 A A Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 5f8f37b5-2193-453e-bba2-665c56c297ae fa01b291-78e0-4b7f-97e6-0a2dea8296bd 7 86849180 86849180 A G SNP CROT NM_021151 human genbank 54_36p +1 reviewed missense c.997 p.M333V 1.000 superfamily_CoA-dependent acyltransferases,HMMPfam_Carn_acyltransf superfamily_CoA-dependent acyltransferases,HMMPfam_Carn_acyltransf,PatternScan_ACYLTRANSF_C_1,PatternScan_ACYLTRANSF_C_2 - no_errors MMP12 4321 genome.wustl.edu 36 11 102243301 102243301 + Missense_Mutation SNP G G A novel unknown TCGA-29-1778-01A-01W-0639-09 TCGA-29-1778-10A-01W-0639-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 5f8f37b5-2193-453e-bba2-665c56c297ae fa01b291-78e0-4b7f-97e6-0a2dea8296bd 11 102243301 102243301 G A SNP MMP12 ENST00000326227 human ensembl 54_36p -1 known missense c.821 p.P274L 0.024 NULL "HMMPfam_PG_binding_1,superfamily_PGBD-like,PatternScan_CYSTEINE_SWITCH,HMMSmart_SM00235,superfamily_Metalloproteases (""zincins"") catalytic domain,HMMPfam_Peptidase_M10,PatternScan_ZINC_PROTEASE,superfamily_Hemopexin-like domain,HMMPfam_Hemopexin,HMMSmart_SM00120,PatternScan_HEMOPEXIN" - no_errors GRIN3A 116443 genome.wustl.edu 36 9 103375450 103375450 + Silent SNP G G T novel unknown TCGA-29-1778-01A-01W-0639-09 TCGA-29-1778-10A-01W-0639-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 5f8f37b5-2193-453e-bba2-665c56c297ae fa01b291-78e0-4b7f-97e6-0a2dea8296bd 9 103375450 103375450 G T SNP GRIN3A NM_133445 human genbank 54_36p -1 reviewed silent c.3175 p.R1059 0.550 NULL superfamily_SSF53822,superfamily_SSF53850,HMMPfam_Lig_chan-Glu_bd,HMMSmart_PBPe,HMMPfam_Lig_chan - no_errors NRCAM 4897 genome.wustl.edu 36 7 107622108 107622108 + Nonsense_Mutation SNP C C T novel unknown TCGA-29-1778-01A-01W-0639-09 TCGA-29-1778-10A-01W-0639-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 5f8f37b5-2193-453e-bba2-665c56c297ae fa01b291-78e0-4b7f-97e6-0a2dea8296bd 7 107622108 107622108 C T SNP NRCAM NM_001037132 human genbank 54_36p -1 reviewed nonsense c.1464 p.W488* 1.000 superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408 superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig,PatternScan_IG_MHC,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3 - no_errors EPB41L4B 54566 genome.wustl.edu 36 9 111081966 111081966 + Silent SNP C C G novel unknown TCGA-29-1778-01A-01W-0639-09 TCGA-29-1778-10A-01W-0639-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 5f8f37b5-2193-453e-bba2-665c56c297ae fa01b291-78e0-4b7f-97e6-0a2dea8296bd 9 111081966 111081966 C G SNP EPB41L4B NM_019114 human genbank 54_36p -1 validated silent c.363 p.V121 1.000 HMMSmart_SM00295,superfamily_Ubiquitin-like,HMMPfam_FERM_N HMMSmart_SM00295,superfamily_Ubiquitin-like,HMMPfam_FERM_N,superfamily_Second domain of FERM,HMMPfam_FERM_M,PatternScan_FERM_2,superfamily_PH domain-like,HMMPfam_FERM_C,HMMPfam_FA - no_errors ZC3H6 376940 genome.wustl.edu 36 2 112796933 112796933 + Silent SNP G G A novel unknown TCGA-29-1778-01A-01W-0639-09 TCGA-29-1778-10A-01W-0639-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 5f8f37b5-2193-453e-bba2-665c56c297ae fa01b291-78e0-4b7f-97e6-0a2dea8296bd 2 112796933 112796933 G A SNP ZC3H6 NM_198581 human genbank 54_36p +1 validated silent c.1323 p.A441 1.000 NULL superfamily_CCCH zinc finger,HMMPfam_zf-CCCH,HMMSmart_SM00356,superfamily_Multiheme cytochromes - no_errors PHLDB2 90102 genome.wustl.edu 36 3 113085721 113085721 + Missense_Mutation SNP A A G novel unknown TCGA-29-1778-01A-01W-0639-09 TCGA-29-1778-10A-01W-0639-09 A A Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 5f8f37b5-2193-453e-bba2-665c56c297ae fa01b291-78e0-4b7f-97e6-0a2dea8296bd 3 113085721 113085721 A G SNP PHLDB2 NM_145753 human genbank 54_36p +1 validated missense c.107 p.E36G 1.000 NULL superfamily_SSF50729,HMMPfam_PH,HMMSmart_PH - no_errors FAM160B1 57700 genome.wustl.edu 36 10 116611228 116611228 + Missense_Mutation SNP A A C novel unknown TCGA-29-1778-01A-01W-0639-09 TCGA-29-1778-10A-01W-0639-09 A A Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 5f8f37b5-2193-453e-bba2-665c56c297ae fa01b291-78e0-4b7f-97e6-0a2dea8296bd 10 116611228 116611228 A C SNP FAM160B1 NM_020940 human genbank 54_36p +1 validated missense c.2237 p.E746A 1.000 NULL HMMPfam_RAI16-like - no_errors MLL 4297 genome.wustl.edu 36 11 117864644 117864644 + Missense_Mutation SNP A G G novel unknown TCGA-29-1778-01A-01W-0639-09 TCGA-29-1778-10A-01W-0639-09 A A Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 5f8f37b5-2193-453e-bba2-665c56c297ae fa01b291-78e0-4b7f-97e6-0a2dea8296bd 11 117864644 117864644 A G SNP MLL NM_005933 human genbank 54_36p +1 validated missense c.4438 p.K1480E 1.000 HMMSmart_SM00249,HMMPfam_PHD,PatternScan_ZF_PHD_1,superfamily_FYVE/PHD zinc finger PatternScan_HMGI_Y,HMMPfam_AT_hook,HMMPfam_zf-CXXC,superfamily_FYVE/PHD zinc finger,HMMSmart_SM00249,HMMPfam_PHD,PatternScan_ZF_PHD_1,PatternScan_RECR,HMMSmart_SM00297,superfamily_Bromodomain,HMMPfam_FYRN,HMMSmart_SM00541,PatternScan_EF_HAND_1,HMMPfam_FYRC,HMMSmart_SM00542,superfamily_SET domain,HMMPfam_SET,HMMSmart_SM00317,HMMSmart_SM00508 - no_errors ZCCHC8 55596 genome.wustl.edu 36 12 121524390 121524390 + Silent SNP C C T novel unknown TCGA-29-1778-01A-01W-0639-09 TCGA-29-1778-10A-01W-0639-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 5f8f37b5-2193-453e-bba2-665c56c297ae fa01b291-78e0-4b7f-97e6-0a2dea8296bd 12 121524390 121524390 C T SNP ZCCHC8 NM_017612 human genbank 54_36p -1 validated silent c.1731 p.T577 0.000 NULL HMMPfam_zf-CCHC,HMMSmart_SM00343,HMMSmart_SM00581,HMMPfam_PSP - no_errors NCOR2 9612 genome.wustl.edu 36 12 123451136 123451136 + Silent SNP G G A novel unknown TCGA-29-1778-01A-01W-0639-09 TCGA-29-1778-10A-01W-0639-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 5f8f37b5-2193-453e-bba2-665c56c297ae fa01b291-78e0-4b7f-97e6-0a2dea8296bd 12 123451136 123451136 G A SNP NCOR2 NM_006312 human genbank 54_36p -1 validated silent c.1677 p.D559 1.000 NULL superfamily_Homeodomain-like,HMMSmart_SM00717,HMMPfam_Myb_DNA-binding - no_errors KIAA0408 9729 genome.wustl.edu 36 6 127809854 127809854 + Missense_Mutation SNP T T C novel unknown TCGA-29-1778-01A-01W-0639-09 TCGA-29-1778-10A-01W-0639-09 T T Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 5f8f37b5-2193-453e-bba2-665c56c297ae fa01b291-78e0-4b7f-97e6-0a2dea8296bd 6 127809854 127809854 T C SNP KIAA0408 NM_014702 human genbank 54_36p -1 validated missense c.1303 p.N435D 0.991 NULL NULL - no_errors ENOX2 10495 genome.wustl.edu 36 X 129629264 129629264 + Silent SNP G G A novel unknown TCGA-29-1778-01A-01W-0639-09 TCGA-29-1778-10A-01W-0639-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 5f8f37b5-2193-453e-bba2-665c56c297ae fa01b291-78e0-4b7f-97e6-0a2dea8296bd X 129629264 129629264 G A SNP ENOX2 NM_182314 human genbank 54_36p -1 reviewed silent c.915 p.N305 0.965 NULL superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1 - no_errors ANKLE2 23141 genome.wustl.edu 36 12 131823707 131823707 + Missense_Mutation SNP G G T novel unknown TCGA-29-1778-01A-01W-0639-09 TCGA-29-1778-10A-01W-0639-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 5f8f37b5-2193-453e-bba2-665c56c297ae fa01b291-78e0-4b7f-97e6-0a2dea8296bd 12 131823707 131823707 G T SNP ANKLE2 NM_015114 human genbank 54_36p -1 validated missense c.1438 p.L480I 0.948 NULL HMMPfam_LEM,superfamily_LEM domain,superfamily_Ankyrin repeat - no_errors LCN9 392399 genome.wustl.edu 36 9 137697370 137697370 + Silent SNP C C T novel unknown TCGA-29-1778-01A-01W-0639-09 TCGA-29-1778-10A-01W-0639-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 5f8f37b5-2193-453e-bba2-665c56c297ae fa01b291-78e0-4b7f-97e6-0a2dea8296bd 9 137697370 137697370 C T SNP LCN9 NM_001001676 human genbank 54_36p +1 provisional silent c.426 p.C142 0.006 superfamily_Lipocalins,HMMPfam_Lipocalin superfamily_Lipocalins,PatternScan_LIPOCALIN,HMMPfam_Lipocalin - no_errors FLG 2312 genome.wustl.edu 36 1 150542992 150542992 + Missense_Mutation SNP C C G novel unknown TCGA-29-1778-01A-01W-0639-09 TCGA-29-1778-10A-01W-0639-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 5f8f37b5-2193-453e-bba2-665c56c297ae fa01b291-78e0-4b7f-97e6-0a2dea8296bd 1 150542992 150542992 C G SNP FLG NM_002016 human genbank 54_36p -1 provisional missense c.10994 p.S3665T 0.016 HMMPfam_Filaggrin superfamily_SSF47473,HMMPfam_S_100,PatternScan_S100_CABP,PatternScan_EF_HAND_1,HMMPfam_Filaggrin - no_errors UAP1 6675 genome.wustl.edu 36 1 160815956 160815956 + Silent SNP C C T novel unknown TCGA-29-1778-01A-01W-0639-09 TCGA-29-1778-10A-01W-0639-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 5f8f37b5-2193-453e-bba2-665c56c297ae fa01b291-78e0-4b7f-97e6-0a2dea8296bd 1 160815956 160815956 C T SNP UAP1 NM_003115 human genbank 54_36p +1 validated silent c.600 p.P200 0.998 superfamily_Nucleotide-diphospho-sugar transferases,HMMPfam_UDPGP superfamily_Nucleotide-diphospho-sugar transferases,HMMPfam_UDPGP - no_errors AADACL1 57552 genome.wustl.edu 36 3 173834027 173834027 + Missense_Mutation SNP G G A novel unknown TCGA-29-1778-01A-01W-0639-09 TCGA-29-1778-10A-01W-0639-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 5f8f37b5-2193-453e-bba2-665c56c297ae fa01b291-78e0-4b7f-97e6-0a2dea8296bd 3 173834027 173834027 G A SNP AADACL1 NM_020792 human genbank 54_36p -1 provisional missense c.1255 p.P419S 1.000 superfamily_alpha/beta-Hydrolases superfamily_alpha/beta-Hydrolases,HMMPfam_Abhydrolase_3,PatternScan_LIPASE_GDXG_SER - no_errors AGA 175 genome.wustl.edu 36 4 178600502 178600502 + Missense_Mutation SNP G G A novel unknown TCGA-29-1778-01A-01W-0639-09 TCGA-29-1778-10A-01W-0639-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 5f8f37b5-2193-453e-bba2-665c56c297ae fa01b291-78e0-4b7f-97e6-0a2dea8296bd 4 178600502 178600502 G A SNP AGA NM_000027 human genbank 54_36p -1 reviewed missense c.22 p.P8S 0.000 HMMPfam_Asparaginase_2 HMMPfam_Asparaginase_2,superfamily_N-terminal nucleophile aminohydrolases (Ntn hydrolases) - no_errors ANKAR 150709 genome.wustl.edu 36 2 190279981 190279981 + Silent SNP C C T novel unknown TCGA-29-1778-01A-01W-0639-09 TCGA-29-1778-10A-01W-0639-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 5f8f37b5-2193-453e-bba2-665c56c297ae fa01b291-78e0-4b7f-97e6-0a2dea8296bd 2 190279981 190279981 C T SNP ANKAR NM_144708 human genbank 54_36p +1 provisional silent c.1770 p.I590 0.997 superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank,superfamily_ARM repeat,HMMPfam_Arm,HMMSmart_SM00185 - no_errors NUAK2 81788 genome.wustl.edu 36 1 203543915 203543915 + Splice_Site SNP C C T novel unknown TCGA-29-1778-01A-01W-0639-09 TCGA-29-1778-10A-01W-0639-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 5f8f37b5-2193-453e-bba2-665c56c297ae fa01b291-78e0-4b7f-97e6-0a2dea8296bd 1 203543915 203543915 C T SNP NUAK2 NM_030952 human genbank 54_36p -1 provisional splice_site c.570+1 e4+1 1.000 - - - no_errors USH2A 7399 genome.wustl.edu 36 1 213879202 213879202 + Silent SNP G G T novel unknown TCGA-29-1778-01A-01W-0639-09 TCGA-29-1778-10A-01W-0639-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 5f8f37b5-2193-453e-bba2-665c56c297ae fa01b291-78e0-4b7f-97e6-0a2dea8296bd 1 213879202 213879202 G T SNP USH2A NM_206933 human genbank 54_36p -1 reviewed silent c.14970 p.T4990 0.987 NULL superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00560,HMMSmart_SM00136,HMMPfam_Laminin_N,HMMPfam_Laminin_EGF,HMMSmart_SM00180,superfamily_EGF/Laminin,PatternScan_EGF_LAM_1,PatternScan_EGF_1,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3,HMMSmart_SM00282,HMMPfam_Laminin_G_2 - no_errors LOC100128825 0 genome.wustl.edu 36 1 243353598 243353598 + RNA SNP A G G novel unknown TCGA-29-1778-01A-01W-0639-09 TCGA-29-1778-10A-01W-0639-09 A A Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 5f8f37b5-2193-453e-bba2-665c56c297ae fa01b291-78e0-4b7f-97e6-0a2dea8296bd 1 243353598 243353598 A G SNP LOC100128825 XR_037654 human genbank 54_36p -1 model rna NULL NULL 0.261 - - - pseudogene