Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error
MT-ND5	4540	genome.wustl.edu	36	MT	12975	12975	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-29-1783-01A-01W-0633-09	TCGA-29-1783-10A-01W-0634-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	44ea2f32-53d4-4310-a339-7b2de9adcc08	dfba5f76-d9ea-4e47-b9a7-76b427ad3a04	MT	12975	12975	T	C	SNP	MT-ND5	ENST00000361567	human	ensembl	54_36p	+1	known	missense	c.638	p.L213P	NULL	HMMPfam_Oxidored_q1	HMMPfam_Oxidored_q1_N,HMMPfam_Oxidored_q1,HMMPfam_NADH5_C	-	no_errors
SDK1	221935	genome.wustl.edu	36	7	4274848	4274848	+	Silent	SNP	C	C	T	novel	unknown	TCGA-29-1783-01A-01W-0633-09	TCGA-29-1783-10A-01W-0634-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	44ea2f32-53d4-4310-a339-7b2de9adcc08	dfba5f76-d9ea-4e47-b9a7-76b427ad3a04	7	4274848	4274848	C	T	SNP	SDK1	NM_001079653	human	genbank	54_36p	+1	validated	silent	c.1980	p.L660	0.004	NULL	superfamily_FN_III-like,HMMSmart_FN3,HMMPfam_fn3	-	no_errors
SNORD10	0	genome.wustl.edu	36	17	7420877	7420877	+	RNA	SNP	T	T	G	novel	unknown	TCGA-29-1783-01A-01W-0633-09	TCGA-29-1783-10A-01W-0634-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	44ea2f32-53d4-4310-a339-7b2de9adcc08	dfba5f76-d9ea-4e47-b9a7-76b427ad3a04	17	7420877	7420877	T	G	SNP	SNORD10	NR_002604	human	genbank	54_36p	+1	provisional	rna	NULL	NULL	1.000	-	-	-	no_errors
AP1M2	10053	genome.wustl.edu	36	19	10555741	10555741	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-29-1783-01A-01W-0633-09	TCGA-29-1783-10A-01W-0634-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	44ea2f32-53d4-4310-a339-7b2de9adcc08	dfba5f76-d9ea-4e47-b9a7-76b427ad3a04	19	10555741	10555741	C	G	SNP	AP1M2	NM_005498	human	genbank	54_36p	-1	reviewed	missense	c.48	p.L16F	1.000	superfamily_SNARE-like	superfamily_SNARE-like,PatternScan_CLAT_ADAPTOR_M_1,HMMPfam_Adap_comp_sub,superfamily_Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor,PatternScan_CLAT_ADAPTOR_M_2	-	no_errors
ROCK2	9475	genome.wustl.edu	36	2	11273746	11273746	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-29-1783-01A-01W-0633-09	TCGA-29-1783-10A-01W-0634-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	44ea2f32-53d4-4310-a339-7b2de9adcc08	dfba5f76-d9ea-4e47-b9a7-76b427ad3a04	2	11273746	11273746	G	C	SNP	ROCK2	NM_004850	human	genbank	54_36p	-1	reviewed	missense	c.1450	p.L484V	1.000	HMMPfam_HR1	superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST,HMMSmart_SM00133,HMMPfam_Pkinase_C,HMMPfam_HR1,HMMPfam_Rho_Binding,superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233,superfamily_Cysteine-rich domain,HMMPfam_C1_1,HMMSmart_SM00109	-	no_errors
ESF1	51575	genome.wustl.edu	36	20	13646050	13646050	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-29-1783-01A-01W-0633-09	TCGA-29-1783-10A-01W-0634-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	44ea2f32-53d4-4310-a339-7b2de9adcc08	dfba5f76-d9ea-4e47-b9a7-76b427ad3a04	20	13646050	13646050	T	A	SNP	ESF1	NM_016649	human	genbank	54_36p	-1	provisional	missense	c.2227	p.M743L	0.980	NULL	NULL	-	no_errors
LOC729404	729404	genome.wustl.edu	36	17	19955908	19955908	+	RNA	SNP	T	T	C	novel	unknown	TCGA-29-1783-01A-01W-0633-09	TCGA-29-1783-10A-01W-0634-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	44ea2f32-53d4-4310-a339-7b2de9adcc08	dfba5f76-d9ea-4e47-b9a7-76b427ad3a04	17	19955908	19955908	T	C	SNP	LOC729404	XR_015968	human	genbank	54_36p	+1	model	rna	NULL	NULL	1.000	-	-	-	pseudogene
LOC81691	81691	genome.wustl.edu	36	16	20732102	20732102	+	Silent	SNP	C	C	G	novel	unknown	TCGA-29-1783-01A-01W-0633-09	TCGA-29-1783-10A-01W-0634-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	44ea2f32-53d4-4310-a339-7b2de9adcc08	dfba5f76-d9ea-4e47-b9a7-76b427ad3a04	16	20732102	20732102	C	G	SNP	LOC81691	NM_030941	human	genbank	54_36p	+1	validated	silent	c.228	p.G76	0.936	NULL	superfamily_Ribonuclease H-like,HMMSmart_SM00479,HMMPfam_Exonuc_X-T,HMMSmart_SM00360,HMMPfam_RRM_1,superfamily_RNA-binding domain RBD	-	no_errors
LDLRAP1	26119	genome.wustl.edu	36	1	25756337	25756337	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-29-1783-01A-01W-0633-09	TCGA-29-1783-10A-01W-0634-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	44ea2f32-53d4-4310-a339-7b2de9adcc08	dfba5f76-d9ea-4e47-b9a7-76b427ad3a04	1	25756337	25756337	C	T	SNP	LDLRAP1	NM_015627	human	genbank	54_36p	+1	reviewed	missense	c.451	p.R151W	1.000	superfamily_SSF50729,HMMSmart_PTB,HMMPfam_PID	superfamily_SSF50729,HMMSmart_PTB,HMMPfam_PID	-	no_errors
MAGEB6	158809	genome.wustl.edu	36	X	26122909	26122909	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-29-1783-01A-01W-0633-09	TCGA-29-1783-10A-01W-0634-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	44ea2f32-53d4-4310-a339-7b2de9adcc08	dfba5f76-d9ea-4e47-b9a7-76b427ad3a04	X	26122909	26122909	T	C	SNP	MAGEB6	NM_173523	human	genbank	54_36p	+1	reviewed	missense	c.1025	p.V342A	0.006	HMMPfam_MAGE	HMMPfam_MAGE	-	no_errors
HNF1B	6928	genome.wustl.edu	36	17	33167777	33167777	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-29-1783-01A-01W-0633-09	TCGA-29-1783-10A-01W-0634-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	44ea2f32-53d4-4310-a339-7b2de9adcc08	dfba5f76-d9ea-4e47-b9a7-76b427ad3a04	17	33167777	33167777	C	T	SNP	HNF1B	NM_000458	human	genbank	54_36p	-1	validated	missense	c.695	p.R232H	1.000	superfamily_Homeodomain-like,HMMSmart_SM00389,HMMPfam_Homeobox	superfamily_Dimerization cofactor of HNF-1 alpha,HMMPfam_HNF-1_N,superfamily_lambda repressor-like DNA-binding domains,superfamily_Homeodomain-like,HMMSmart_SM00389,HMMPfam_Homeobox,PatternScan_HOMEOBOX_1,HMMPfam_HNF-1B_C	-	no_errors
C20orf132	140699	genome.wustl.edu	36	20	35216926	35216926	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-29-1783-01A-01W-0633-09	TCGA-29-1783-10A-01W-0634-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	44ea2f32-53d4-4310-a339-7b2de9adcc08	dfba5f76-d9ea-4e47-b9a7-76b427ad3a04	20	35216926	35216926	C	G	SNP	C20orf132	NM_152503	human	genbank	54_36p	-1	validated	missense	c.788	p.S263T	0.334	superfamily_ARM repeat	superfamily_ARM repeat	-	no_errors
GPR34	2857	genome.wustl.edu	36	X	41440285	41440285	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-29-1783-01A-01W-0633-09	TCGA-29-1783-10A-01W-0634-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	44ea2f32-53d4-4310-a339-7b2de9adcc08	dfba5f76-d9ea-4e47-b9a7-76b427ad3a04	X	41440285	41440285	G	A	SNP	GPR34	NM_001097579	human	genbank	54_36p	+1	validated	missense	c.455	p.R152H	1.000	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
ATP5A1	498	genome.wustl.edu	36	18	41923955	41923955	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-29-1783-01A-01W-0633-09	TCGA-29-1783-10A-01W-0634-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	44ea2f32-53d4-4310-a339-7b2de9adcc08	dfba5f76-d9ea-4e47-b9a7-76b427ad3a04	18	41923955	41923955	C	T	SNP	ATP5A1	NM_001001937	human	genbank	54_36p	-1	reviewed	missense	c.315	p.M105I	1.000	superfamily_N-terminal domain of alpha and beta subunits of F1 ATP synthase,HMMPfam_ATP-synt_ab_N	superfamily_N-terminal domain of alpha and beta subunits of F1 ATP synthase,HMMPfam_ATP-synt_ab_N,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_ATP-synt_ab,PatternScan_ATPASE_ALPHA_BETA,superfamily_C-terminal domain of alpha and beta subunits of F1 ATP synthase,HMMPfam_ATP-synt_ab_C	-	no_errors
TSPAN18	90139	genome.wustl.edu	36	11	44898067	44898067	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-29-1783-01A-01W-0633-09	TCGA-29-1783-10A-01W-0634-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	44ea2f32-53d4-4310-a339-7b2de9adcc08	dfba5f76-d9ea-4e47-b9a7-76b427ad3a04	11	44898067	44898067	G	A	SNP	TSPAN18	NM_001031730	human	genbank	54_36p	+1	provisional	missense	c.556	p.G186R	0.667	HMMPfam_Tetraspannin,superfamily_Tetraspanin	HMMPfam_Tetraspannin,PatternScan_TM4_1,PatternScan_ALBUMIN,superfamily_Tetraspanin	-	no_errors
ANUBL1	93550	genome.wustl.edu	36	10	45455336	45455336	+	Silent	SNP	A	A	G	novel	unknown	TCGA-29-1783-01A-01W-0633-09	TCGA-29-1783-10A-01W-0634-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	44ea2f32-53d4-4310-a339-7b2de9adcc08	dfba5f76-d9ea-4e47-b9a7-76b427ad3a04	10	45455336	45455336	A	G	SNP	ANUBL1	NM_174890	human	genbank	54_36p	-1	validated	silent	c.651	p.N217	1.000	NULL	HMMSmart_SM00213,superfamily_Ubiquitin-like,HMMPfam_ubiquitin,HMMSmart_SM00154,HMMPfam_zf-AN1	-	no_errors
LRRC2	79442	genome.wustl.edu	36	3	46561719	46561719	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-29-1783-01A-01W-0633-09	TCGA-29-1783-10A-01W-0634-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	44ea2f32-53d4-4310-a339-7b2de9adcc08	dfba5f76-d9ea-4e47-b9a7-76b427ad3a04	3	46561719	46561719	C	A	SNP	LRRC2	NM_024512	human	genbank	54_36p	-1	validated	nonsense	c.154	p.E52*	1.000	superfamily_SSF52058	superfamily_SSF52058,HMMSmart_LRR_TYP,HMMPfam_LRR_1	-	no_errors
CA10	56934	genome.wustl.edu	36	17	47180007	47180007	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-29-1783-01A-01W-0633-09	TCGA-29-1783-10A-01W-0634-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	44ea2f32-53d4-4310-a339-7b2de9adcc08	dfba5f76-d9ea-4e47-b9a7-76b427ad3a04	17	47180007	47180007	C	G	SNP	CA10	NM_001082533	human	genbank	54_36p	-1	reviewed	missense	c.450	p.Q150H	1.000	superfamily_Carbonic anhydrase,HMMPfam_Carb_anhydrase	superfamily_Carbonic anhydrase,HMMPfam_Carb_anhydrase	-	no_errors
SCAP	22937	genome.wustl.edu	36	3	47430536	47430536	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-29-1783-01A-01W-0633-09	TCGA-29-1783-10A-01W-0634-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	44ea2f32-53d4-4310-a339-7b2de9adcc08	dfba5f76-d9ea-4e47-b9a7-76b427ad3a04	3	47430536	47430536	C	T	SNP	SCAP	NM_012235	human	genbank	54_36p	-1	reviewed	missense	c.3652	p.G1218S	0.998	superfamily_WD40 repeat-like,HMMSmart_SM00320	superfamily_Multidrug efflux transporter AcrB transmembrane domain,HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40,PatternScan_WD_REPEATS_1	-	no_errors
CLCN5	1184	genome.wustl.edu	36	X	49741560	49741560	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-29-1783-01A-01W-0633-09	TCGA-29-1783-10A-01W-0634-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	44ea2f32-53d4-4310-a339-7b2de9adcc08	dfba5f76-d9ea-4e47-b9a7-76b427ad3a04	X	49741560	49741560	C	A	SNP	CLCN5	NM_000084	human	genbank	54_36p	+1	reviewed	missense	c.1582	p.L528M	1.000	superfamily_Clc chloride channel,HMMPfam_Voltage_CLC	superfamily_Clc chloride channel,HMMPfam_Voltage_CLC,superfamily_CBS-domain,HMMSmart_SM00116,HMMPfam_CBS	-	no_errors
CSRNP2	81566	genome.wustl.edu	36	12	49756511	49756511	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-29-1783-01A-01W-0633-09	TCGA-29-1783-10A-01W-0634-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	44ea2f32-53d4-4310-a339-7b2de9adcc08	dfba5f76-d9ea-4e47-b9a7-76b427ad3a04	12	49756511	49756511	C	G	SNP	CSRNP2	NM_030809	human	genbank	54_36p	-1	provisional	missense	c.101	p.S34T	1.000	NULL	NULL	-	no_errors
KRT73	319101	genome.wustl.edu	36	12	51298411	51298411	+	Silent	SNP	C	C	G	novel	unknown	TCGA-29-1783-01A-01W-0633-09	TCGA-29-1783-10A-01W-0634-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	44ea2f32-53d4-4310-a339-7b2de9adcc08	dfba5f76-d9ea-4e47-b9a7-76b427ad3a04	12	51298411	51298411	C	G	SNP	KRT73	NM_175068	human	genbank	54_36p	-1	provisional	silent	c.165	p.R55	0.931	NULL	HMMPfam_Filament,PatternScan_IF	-	no_errors
ASAH2	56624	genome.wustl.edu	36	10	51673003	51673003	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-29-1783-01A-01W-0633-09	TCGA-29-1783-10A-01W-0634-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	44ea2f32-53d4-4310-a339-7b2de9adcc08	dfba5f76-d9ea-4e47-b9a7-76b427ad3a04	10	51673003	51673003	C	T	SNP	ASAH2	NM_019893	human	genbank	54_36p	-1	validated	missense	c.418	p.D140N	0.999	HMMPfam_Ceramidase_alk	HMMPfam_Ceramidase_alk	-	no_errors
CPT2	1376	genome.wustl.edu	36	1	53451632	53451632	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-29-1783-01A-01W-0633-09	TCGA-29-1783-10A-01W-0634-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	44ea2f32-53d4-4310-a339-7b2de9adcc08	dfba5f76-d9ea-4e47-b9a7-76b427ad3a04	1	53451632	53451632	A	G	SNP	CPT2	NM_000098	human	genbank	54_36p	+1	reviewed	missense	c.1754	p.N585S	1.000	HMMPfam_Carn_acyltransf,superfamily_CoA-dependent acyltransferases	superfamily_CoA-dependent acyltransferases,HMMPfam_Carn_acyltransf,PatternScan_ACYLTRANSF_C_1,PatternScan_ACYLTRANSF_C_2	-	no_errors
PPP1R15A	23645	genome.wustl.edu	36	19	54069401	54069401	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-29-1783-01A-01W-0633-09	TCGA-29-1783-10A-01W-0634-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	44ea2f32-53d4-4310-a339-7b2de9adcc08	dfba5f76-d9ea-4e47-b9a7-76b427ad3a04	19	54069401	54069401	G	C	SNP	PPP1R15A	NM_014330	human	genbank	54_36p	+1	validated	missense	c.1099	p.D367H	0.022	NULL	HMMPfam_PP1c_bdg	-	no_errors
PPP1R15A	23645	genome.wustl.edu	36	19	54069518	54069518	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-29-1783-01A-01W-0633-09	TCGA-29-1783-10A-01W-0634-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	44ea2f32-53d4-4310-a339-7b2de9adcc08	dfba5f76-d9ea-4e47-b9a7-76b427ad3a04	19	54069518	54069518	G	T	SNP	PPP1R15A	NM_014330	human	genbank	54_36p	+1	validated	missense	c.1216	p.D406Y	0.011	NULL	HMMPfam_PP1c_bdg	-	no_errors
PPP1R15A	23645	genome.wustl.edu	36	19	54069769	54069769	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-29-1783-01A-01W-0633-09	TCGA-29-1783-10A-01W-0634-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	44ea2f32-53d4-4310-a339-7b2de9adcc08	dfba5f76-d9ea-4e47-b9a7-76b427ad3a04	19	54069769	54069769	G	C	SNP	PPP1R15A	NM_014330	human	genbank	54_36p	+1	validated	missense	c.1467	p.E489D	0.000	NULL	HMMPfam_PP1c_bdg	-	no_errors
PPP1R15A	23645	genome.wustl.edu	36	19	54069839	54069839	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-29-1783-01A-01W-0633-09	TCGA-29-1783-10A-01W-0634-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	44ea2f32-53d4-4310-a339-7b2de9adcc08	dfba5f76-d9ea-4e47-b9a7-76b427ad3a04	19	54069839	54069839	G	C	SNP	PPP1R15A	NM_014330	human	genbank	54_36p	+1	validated	missense	c.1537	p.V513L	0.000	NULL	HMMPfam_PP1c_bdg	-	no_errors
PPP1R15A	23645	genome.wustl.edu	36	19	54070722	54070722	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-29-1783-01A-01W-0633-09	TCGA-29-1783-10A-01W-0634-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	44ea2f32-53d4-4310-a339-7b2de9adcc08	dfba5f76-d9ea-4e47-b9a7-76b427ad3a04	19	54070722	54070722	G	C	SNP	PPP1R15A	NM_014330	human	genbank	54_36p	+1	validated	missense	c.1705	p.V569L	0.992	HMMPfam_PP1c_bdg	HMMPfam_PP1c_bdg	-	no_errors
TRO	7216	genome.wustl.edu	36	X	54968833	54968833	+	Silent	SNP	A	A	C	novel	unknown	TCGA-29-1783-01A-01W-0633-09	TCGA-29-1783-10A-01W-0634-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	44ea2f32-53d4-4310-a339-7b2de9adcc08	dfba5f76-d9ea-4e47-b9a7-76b427ad3a04	X	54968833	54968833	A	C	SNP	TRO	NM_001039705	human	genbank	54_36p	+1	reviewed	silent	c.1569	p.I523	0.999	HMMPfam_MAGE	HMMPfam_MAGE	-	no_errors
MYO1A	4640	genome.wustl.edu	36	12	55723167	55723167	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-29-1783-01A-01W-0633-09	TCGA-29-1783-10A-01W-0634-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	44ea2f32-53d4-4310-a339-7b2de9adcc08	dfba5f76-d9ea-4e47-b9a7-76b427ad3a04	12	55723167	55723167	G	A	SNP	MYO1A	NM_005379	human	genbank	54_36p	-1	reviewed	missense	c.1054	p.R352C	1.000	HMMSmart_MYSc,superfamily_SSF52540,HMMPfam_Myosin_head	HMMSmart_MYSc,superfamily_SSF52540,HMMPfam_Myosin_head,HMMSmart_IQ,HMMPfam_IQ,HMMPfam_Myosin_TH1	-	no_errors
CTDSP2	10106	genome.wustl.edu	36	12	56507097	56507097	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-29-1783-01A-01W-0633-09	TCGA-29-1783-10A-01W-0634-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	44ea2f32-53d4-4310-a339-7b2de9adcc08	dfba5f76-d9ea-4e47-b9a7-76b427ad3a04	12	56507097	56507097	C	A	SNP	CTDSP2	NM_005730	human	genbank	54_36p	-1	validated	missense	c.303	p.R101S	1.000	superfamily_HAD-like,HMMPfam_NIF,HMMSmart_SM00577	superfamily_HAD-like,HMMPfam_NIF,HMMSmart_SM00577	-	no_errors
ACTBL2	345651	genome.wustl.edu	36	5	56813511	56813511	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-29-1783-01A-01W-0633-09	TCGA-29-1783-10A-01W-0634-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	44ea2f32-53d4-4310-a339-7b2de9adcc08	dfba5f76-d9ea-4e47-b9a7-76b427ad3a04	5	56813511	56813511	C	G	SNP	ACTBL2	NM_001017992	human	genbank	54_36p	-1	validated	missense	c.781	p.A261P	1.000	HMMPfam_Actin,HMMSmart_SM00268,superfamily_Actin-like ATPase domain	superfamily_Actin-like ATPase domain,HMMPfam_Actin,HMMSmart_SM00268,PatternScan_ACTINS_1,PatternScan_ACTINS_ACT_LIKE,PatternScan_ACTINS_2	-	no_errors
SPIN3	169981	genome.wustl.edu	36	X	57037597	57037597	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-29-1783-01A-01W-0633-09	TCGA-29-1783-10A-01W-0634-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	44ea2f32-53d4-4310-a339-7b2de9adcc08	dfba5f76-d9ea-4e47-b9a7-76b427ad3a04	X	57037597	57037597	G	A	SNP	SPIN3	NM_001010862	human	genbank	54_36p	-1	validated	missense	c.509	p.P170L	1.000	HMMPfam_Spin-Ssty	HMMPfam_Spin-Ssty	-	no_errors
BRIP1	83990	genome.wustl.edu	36	17	57231400	57231400	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-29-1783-01A-01W-0633-09	TCGA-29-1783-10A-01W-0634-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	44ea2f32-53d4-4310-a339-7b2de9adcc08	dfba5f76-d9ea-4e47-b9a7-76b427ad3a04	17	57231400	57231400	C	T	SNP	BRIP1	NM_032043	human	genbank	54_36p	-1	reviewed	missense	c.1183	p.A395T	1.000	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00488,HMMSmart_SM00487,HMMPfam_DEAD_2	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00488,HMMSmart_SM00487,HMMPfam_DEAD_2,HMMSmart_SM00491	-	no_errors
TMPRSS11A	339967	genome.wustl.edu	36	4	68480322	68480322	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-29-1783-01A-01W-0633-09	TCGA-29-1783-10A-01W-0634-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	44ea2f32-53d4-4310-a339-7b2de9adcc08	dfba5f76-d9ea-4e47-b9a7-76b427ad3a04	4	68480322	68480322	G	T	SNP	TMPRSS11A	NM_182606	human	genbank	54_36p	-1	validated	missense	c.313	p.Q105K	0.540	superfamily_SEA domain,HMMPfam_SEA	superfamily_SEA domain,HMMPfam_SEA,superfamily_Trypsin-like serine proteases,HMMSmart_SM00020,HMMPfam_Trypsin,PatternScan_TRYPSIN_HIS,PatternScan_TRYPSIN_SER	-	no_errors
KIAA0913	23053	genome.wustl.edu	36	10	75227663	75227663	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-29-1783-01A-01W-0633-09	TCGA-29-1783-10A-01W-0634-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	44ea2f32-53d4-4310-a339-7b2de9adcc08	dfba5f76-d9ea-4e47-b9a7-76b427ad3a04	10	75227663	75227663	A	T	SNP	KIAA0913	NM_015037	human	genbank	54_36p	+1	validated	missense	c.3781	p.S1261C	1.000	NULL	HMMPfam_SWIM	-	no_errors
ACSBG1	23205	genome.wustl.edu	36	15	76258057	76258057	+	Silent	SNP	G	A	A	novel	unknown	TCGA-29-1783-01A-01W-0633-09	TCGA-29-1783-10A-01W-0634-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	44ea2f32-53d4-4310-a339-7b2de9adcc08	dfba5f76-d9ea-4e47-b9a7-76b427ad3a04	15	76258057	76258057	G	A	SNP	ACSBG1	NM_015162	human	genbank	54_36p	-1	reviewed	silent	c.1656	p.G552	0.995	superfamily_Acetyl-CoA synthetase-like,HMMPfam_AMP-binding	superfamily_Acetyl-CoA synthetase-like,HMMPfam_AMP-binding,PatternScan_AMP_BINDING	-	no_errors
VASH1	22846	genome.wustl.edu	36	14	76307320	76307320	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-29-1783-01A-01W-0633-09	TCGA-29-1783-10A-01W-0634-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	44ea2f32-53d4-4310-a339-7b2de9adcc08	dfba5f76-d9ea-4e47-b9a7-76b427ad3a04	14	76307320	76307320	A	G	SNP	VASH1	NM_014909	human	genbank	54_36p	+1	validated	missense	c.433	p.K145E	1.000	NULL	NULL	-	no_errors
LPAR4	2846	genome.wustl.edu	36	X	77897582	77897582	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-29-1783-01A-01W-0633-09	TCGA-29-1783-10A-01W-0634-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	44ea2f32-53d4-4310-a339-7b2de9adcc08	dfba5f76-d9ea-4e47-b9a7-76b427ad3a04	X	77897582	77897582	C	A	SNP	LPAR4	NM_005296	human	genbank	54_36p	+1	reviewed	missense	c.560	p.T187N	1.000	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
ROBO1	6091	genome.wustl.edu	36	3	78759328	78759328	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-29-1783-01A-01W-0633-09	TCGA-29-1783-10A-01W-0634-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	44ea2f32-53d4-4310-a339-7b2de9adcc08	dfba5f76-d9ea-4e47-b9a7-76b427ad3a04	3	78759328	78759328	T	G	SNP	ROBO1	NM_002941	human	genbank	54_36p	-1	reviewed	missense	c.3708	p.E1236D	0.908	NULL	superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408,HMMSmart_SM00406,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3	-	no_errors
BTBD1	53339	genome.wustl.edu	36	15	81509871	81509871	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-29-1783-01A-01W-0633-09	TCGA-29-1783-10A-01W-0634-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	44ea2f32-53d4-4310-a339-7b2de9adcc08	dfba5f76-d9ea-4e47-b9a7-76b427ad3a04	15	81509871	81509871	T	C	SNP	BTBD1	NM_025238	human	genbank	54_36p	-1	reviewed	missense	c.622	p.M208V	0.952	HMMPfam_BACK	superfamily_BTB/POZ_fold,HMMPfam_BTB,HMMSmart_BTB,HMMPfam_BACK,HMMPfam_PHR	-	no_errors
ABCA4	24	genome.wustl.edu	36	1	94260045	94260045	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-29-1783-01A-01W-0633-09	TCGA-29-1783-10A-01W-0634-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	44ea2f32-53d4-4310-a339-7b2de9adcc08	dfba5f76-d9ea-4e47-b9a7-76b427ad3a04	1	94260045	94260045	C	T	SNP	ABCA4	NM_000350	human	genbank	54_36p	-1	reviewed	missense	c.4718	p.G1573E	0.112	NULL	superfamily_SSF52540,HMMSmart_AAA,HMMPfam_ABC_tran,PatternScan_ABC_TRANSPORTER_1	-	no_errors
RPL30	6156	genome.wustl.edu	36	8	99126421	99126421	+	Nonsense_Mutation	SNP	G	G	C	novel	unknown	TCGA-29-1783-01A-01W-0633-09	TCGA-29-1783-10A-01W-0634-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	44ea2f32-53d4-4310-a339-7b2de9adcc08	dfba5f76-d9ea-4e47-b9a7-76b427ad3a04	8	99126421	99126421	G	C	SNP	RPL30	NM_000989	human	genbank	54_36p	-1	reviewed	nonsense	c.93	p.Y31*	1.000	superfamily_L30e-like,HMMPfam_Ribosomal_L7Ae,PatternScan_RIBOSOMAL_L30E_1	superfamily_L30e-like,HMMPfam_Ribosomal_L7Ae,PatternScan_RIBOSOMAL_L30E_1,PatternScan_RIBOSOMAL_L30E_2	-	no_errors
DYNC1H1	1778	genome.wustl.edu	36	14	101563343	101563343	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-29-1783-01A-01W-0633-09	TCGA-29-1783-10A-01W-0634-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	44ea2f32-53d4-4310-a339-7b2de9adcc08	dfba5f76-d9ea-4e47-b9a7-76b427ad3a04	14	101563343	101563343	G	A	SNP	DYNC1H1	NM_001376	human	genbank	54_36p	+1	reviewed	missense	c.8851	p.A2951T	1.000	superfamily_SSF52540,HMMSmart_AAA	HMMPfam_DHC_N1,HMMPfam_DHC_N2,superfamily_SSF52540,HMMSmart_AAA,HMMPfam_AAA_5,HMMPfam_Dynein_heavy	-	no_errors
POLR3B	55703	genome.wustl.edu	36	12	105419264	105419264	+	Silent	SNP	C	C	T	novel	unknown	TCGA-29-1783-01A-01W-0633-09	TCGA-29-1783-10A-01W-0634-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	44ea2f32-53d4-4310-a339-7b2de9adcc08	dfba5f76-d9ea-4e47-b9a7-76b427ad3a04	12	105419264	105419264	C	T	SNP	POLR3B	NM_018082	human	genbank	54_36p	+1	provisional	silent	c.3018	p.P1006	0.156	superfamily_beta and beta-prime subunits of DNA dependent RNA-polymerase,HMMPfam_RNA_pol_Rpb2_6	superfamily_beta and beta-prime subunits of DNA dependent RNA-polymerase,HMMPfam_RNA_pol_Rpb2_1,HMMPfam_RNA_pol_Rpb2_2,HMMPfam_RNA_pol_Rpb2_3,HMMPfam_RNA_pol_Rpb2_4,HMMPfam_RNA_pol_Rpb2_5,HMMPfam_RNA_pol_Rpb2_6,PatternScan_RNA_POL_BETA,HMMPfam_RNA_pol_Rpb2_7	-	no_errors
PKHD1L1	93035	genome.wustl.edu	36	8	110546072	110546072	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-29-1783-01A-01W-0633-09	TCGA-29-1783-10A-01W-0634-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	44ea2f32-53d4-4310-a339-7b2de9adcc08	dfba5f76-d9ea-4e47-b9a7-76b427ad3a04	8	110546072	110546072	T	A	SNP	PKHD1L1	NM_177531	human	genbank	54_36p	+1	validated	missense	c.7835	p.F2612Y	0.998	NULL	superfamily_E set domains,HMMSmart_SM00429,HMMPfam_TIG,HMMSmart_SM00758,superfamily_Anthrax protective antigen,HMMSmart_SM00710,superfamily_Cupredoxins,HMMPfam_G8,superfamily_Pectin lyase-like	-	no_errors
KCND3	3752	genome.wustl.edu	36	1	112326763	112326763	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-29-1783-01A-01W-0633-09	TCGA-29-1783-10A-01W-0634-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	44ea2f32-53d4-4310-a339-7b2de9adcc08	dfba5f76-d9ea-4e47-b9a7-76b427ad3a04	1	112326763	112326763	G	A	SNP	KCND3	NM_004980	human	genbank	54_36p	-1	reviewed	missense	c.109	p.R37W	0.995	NULL	superfamily_POZ domain,HMMSmart_SM00225,HMMPfam_K_tetra,superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans	-	no_errors
ATRNL1	26033	genome.wustl.edu	36	10	117016357	117016357	+	Silent	SNP	A	A	G	novel	unknown	TCGA-29-1783-01A-01W-0633-09	TCGA-29-1783-10A-01W-0634-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	44ea2f32-53d4-4310-a339-7b2de9adcc08	dfba5f76-d9ea-4e47-b9a7-76b427ad3a04	10	117016357	117016357	A	G	SNP	ATRNL1	NM_207303	human	genbank	54_36p	+1	validated	silent	c.1866	p.E622	0.282	superfamily_Plexin repeat,HMMSmart_SM00423	superfamily_EGF/Laminin,HMMSmart_SM00181,PatternScan_EGF_1,PatternScan_EGF_2,superfamily_Spermadhesin CUB domain,HMMPfam_CUB,HMMSmart_SM00042,HMMPfam_EGF_2,superfamily_Galactose oxidase central domain,HMMPfam_Kelch_1,HMMPfam_Kelch_2,superfamily_Plexin repeat,HMMSmart_SM00423,HMMPfam_PSI,superfamily_C-type lectin-like,HMMSmart_SM00034,HMMPfam_Lectin_C,HMMPfam_Laminin_EGF,HMMSmart_SM00180,PatternScan_EGF_LAM_1	-	no_errors
DOCK11	139818	genome.wustl.edu	36	X	117586145	117586145	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-29-1783-01A-01W-0633-09	TCGA-29-1783-10A-01W-0634-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	44ea2f32-53d4-4310-a339-7b2de9adcc08	dfba5f76-d9ea-4e47-b9a7-76b427ad3a04	X	117586145	117586145	G	A	SNP	DOCK11	NM_144658	human	genbank	54_36p	+1	validated	missense	c.1027	p.E343K	0.989	NULL	superfamily_SSF50729,HMMPfam_PH,HMMSmart_PH,HMMPfam_Ded_cyto	-	no_errors
RNF148	378925	genome.wustl.edu	36	7	122129257	122129257	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-29-1783-01A-01W-0633-09	TCGA-29-1783-10A-01W-0634-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	44ea2f32-53d4-4310-a339-7b2de9adcc08	dfba5f76-d9ea-4e47-b9a7-76b427ad3a04	7	122129257	122129257	A	T	SNP	RNF148	NM_198085	human	genbank	54_36p	-1	validated	missense	c.784	p.F262I	1.000	superfamily_SSF57850,HMMSmart_RING,HMMPfam_zf-C3HC4	superfamily_SSF52025,HMMPfam_PA,superfamily_SSF57850,HMMSmart_RING,HMMPfam_zf-C3HC4	-	no_errors
GSN	2934	genome.wustl.edu	36	9	123112860	123112860	+	Silent	SNP	G	G	A	novel	unknown	TCGA-29-1783-01A-01W-0633-09	TCGA-29-1783-10A-01W-0634-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	44ea2f32-53d4-4310-a339-7b2de9adcc08	dfba5f76-d9ea-4e47-b9a7-76b427ad3a04	9	123112860	123112860	G	A	SNP	GSN	NM_000177	human	genbank	54_36p	+1	reviewed	silent	c.582	p.G194	0.998	superfamily_Actin depolymerizing proteins,HMMSmart_SM00262	superfamily_Actin depolymerizing proteins,HMMSmart_SM00262,HMMPfam_Gelsolin	-	no_errors
GRM8	2918	genome.wustl.edu	36	7	126533857	126533857	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-29-1783-01A-01W-0633-09	TCGA-29-1783-10A-01W-0634-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	44ea2f32-53d4-4310-a339-7b2de9adcc08	dfba5f76-d9ea-4e47-b9a7-76b427ad3a04	7	126533857	126533857	G	A	SNP	GRM8	NM_000845	human	genbank	54_36p	-1	reviewed	missense	c.656	p.S219L	1.000	superfamily_Periplasmic binding protein-like I,HMMPfam_ANF_receptor	superfamily_Periplasmic binding protein-like I,HMMPfam_ANF_receptor,PatternScan_G_PROTEIN_RECEP_F3_1,HMMPfam_NCD3G,PatternScan_G_PROTEIN_RECEP_F3_2,HMMPfam_7tm_3,PatternScan_G_PROTEIN_RECEP_F3_3	-	no_errors
FLNC	2318	genome.wustl.edu	36	7	128264793	128264793	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-29-1783-01A-01W-0633-09	TCGA-29-1783-10A-01W-0634-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	44ea2f32-53d4-4310-a339-7b2de9adcc08	dfba5f76-d9ea-4e47-b9a7-76b427ad3a04	7	128264793	128264793	C	T	SNP	FLNC	NM_001458	human	genbank	54_36p	+1	reviewed	nonsense	c.805	p.R269*	0.867	NULL	superfamily_Calponin-homology domain CH-domain,HMMPfam_CH,PatternScan_ACTININ_1,HMMSmart_SM00033,PatternScan_ACTININ_2,superfamily_E set domains,HMMPfam_Filamin,HMMSmart_SM00557	-	no_errors
OR13H1	347468	genome.wustl.edu	36	X	130506551	130506551	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-29-1783-01A-01W-0633-09	TCGA-29-1783-10A-01W-0634-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	44ea2f32-53d4-4310-a339-7b2de9adcc08	dfba5f76-d9ea-4e47-b9a7-76b427ad3a04	X	130506551	130506551	G	A	SNP	OR13H1	NM_001004486	human	genbank	54_36p	+1	provisional	missense	c.823	p.V275M	0.010	superfamily_SSF81321,HMMPfam_7tm_1	PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321,HMMPfam_7tm_1	-	no_errors
GRM1	2911	genome.wustl.edu	36	6	146667594	146667594	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-29-1783-01A-01W-0633-09	TCGA-29-1783-10A-01W-0634-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	44ea2f32-53d4-4310-a339-7b2de9adcc08	dfba5f76-d9ea-4e47-b9a7-76b427ad3a04	6	146667594	146667594	C	G	SNP	GRM1	NM_000838	human	genbank	54_36p	+1	reviewed	missense	c.1105	p.P369A	0.999	superfamily_SSF53822,HMMPfam_ANF_receptor	superfamily_SSF53822,HMMPfam_ANF_receptor,PatternScan_G_PROTEIN_RECEP_F3_1,HMMPfam_NCD3G,PatternScan_G_PROTEIN_RECEP_F3_2,HMMPfam_7tm_3,PatternScan_G_PROTEIN_RECEP_F3_3,HMMPfam_GluR_Homer-bdg	-	no_errors
LOC729780	729780	genome.wustl.edu	36	1	156431991	156431991	+	RNA	SNP	T	T	A	novel	unknown	TCGA-29-1783-01A-01W-0633-09	TCGA-29-1783-10A-01W-0634-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	44ea2f32-53d4-4310-a339-7b2de9adcc08	dfba5f76-d9ea-4e47-b9a7-76b427ad3a04	1	156431991	156431991	T	A	SNP	LOC729780	XR_015653	human	genbank	54_36p	-1	model	rna	NULL	NULL	0.301	-	-	-	pseudogene
RAPGEF2	9693	genome.wustl.edu	36	4	160483903	160483903	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-29-1783-01A-01W-0633-09	TCGA-29-1783-10A-01W-0634-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	44ea2f32-53d4-4310-a339-7b2de9adcc08	dfba5f76-d9ea-4e47-b9a7-76b427ad3a04	4	160483903	160483903	G	A	SNP	RAPGEF2	NM_014247	human	genbank	54_36p	+1	validated	missense	c.2668	p.G890R	1.000	superfamily_Ras_GEF,HMMSmart_RasGEF,HMMPfam_RasGEF	superfamily_cNMP_binding,HMMSmart_cNMP,HMMPfam_cNMP_binding,superfamily_Ras_GEF,HMMSmart_RasGEFN,HMMPfam_RasGEF_N,superfamily_PDZ,HMMSmart_PDZ,HMMPfam_PDZ,HMMPfam_RA,HMMSmart_RA,HMMSmart_RasGEF,HMMPfam_RasGEF	-	no_errors
RPS6KA2	6196	genome.wustl.edu	36	6	166753407	166753407	+	Silent	SNP	C	C	T	rs55690286	unknown	TCGA-29-1783-01A-01W-0633-09	TCGA-29-1783-10A-01W-0634-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	44ea2f32-53d4-4310-a339-7b2de9adcc08	dfba5f76-d9ea-4e47-b9a7-76b427ad3a04	6	166753407	166753407	C	T	SNP	RPS6KA2	NM_001006932	human	genbank	54_36p	-1	reviewed	silent	c.1797	p.A599	1.000	superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase	superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST,HMMSmart_S_TK_X,HMMPfam_Pkinase_C	-	no_errors
RFTN2	130132	genome.wustl.edu	36	2	198248320	198248320	+	Silent	SNP	G	G	A	novel	unknown	TCGA-29-1783-01A-01W-0633-09	TCGA-29-1783-10A-01W-0634-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	44ea2f32-53d4-4310-a339-7b2de9adcc08	dfba5f76-d9ea-4e47-b9a7-76b427ad3a04	2	198248320	198248320	G	A	SNP	RFTN2	NM_144629	human	genbank	54_36p	-1	validated	silent	c.108	p.Y36	1.000	NULL	NULL	-	no_errors
GIGYF2	26058	genome.wustl.edu	36	2	233392811	233392811	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-29-1783-01A-01W-0633-09	TCGA-29-1783-10A-01W-0634-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	44ea2f32-53d4-4310-a339-7b2de9adcc08	dfba5f76-d9ea-4e47-b9a7-76b427ad3a04	2	233392811	233392811	G	A	SNP	GIGYF2	NM_001103147	human	genbank	54_36p	+1	validated	missense	c.2464	p.E822K	1.000	NULL	superfamily_GYF,HMMPfam_GYF,HMMSmart_GYF	-	no_errors
LOC643905	643905	genome.wustl.edu	36	2	240630916	240630916	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-29-1783-01A-01W-0633-09	TCGA-29-1783-10A-01W-0634-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	44ea2f32-53d4-4310-a339-7b2de9adcc08	dfba5f76-d9ea-4e47-b9a7-76b427ad3a04	2	240630916	240630916	G	A	SNP	LOC643905	NM_001080835	human	genbank	54_36p	-1	predicted	missense	c.157	p.R53W	0.003	NULL	NULL	-	no_errors
ZNF263	10127	genome.wustl.edu	36	16	3280128	3280129	+	Frame_Shift_Del	DEL	GA	GA	-	novel	unknown	TCGA-29-1783-01A-01W-0633-09	TCGA-29-1783-10A-01W-0634-09	GA	GA					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	44ea2f32-53d4-4310-a339-7b2de9adcc08	dfba5f76-d9ea-4e47-b9a7-76b427ad3a04	16	3280128	3280129	GA	-	DEL	ZNF263	NM_005741	human	genbank	54_36p	+1	validated	frame_shift_del	c.1621_1622	p.R544fs	1.000:1.000	NULL	HMMPfam_SCAN,HMMSmart_SM00431,superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMSmart_SM00349,HMMPfam_KRAB,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	(deletion:cds_exon[3279394,3280559])	no_errors
TP53	7157	genome.wustl.edu	36	17	7520044	7520045	+	Frame_Shift_Ins	INS	-	-	TC	novel	unknown	TCGA-29-1783-01A-01W-0633-09	TCGA-29-1783-10A-01W-0634-09	-	-					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	44ea2f32-53d4-4310-a339-7b2de9adcc08	dfba5f76-d9ea-4e47-b9a7-76b427ad3a04	17	7520044	7520045	-	TC	INS	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	frame_shift_ins	c.368_367	p.T123fs	0.995:0.986	HMMPfam_P53,superfamily_p53-like transcription factors	HMMPfam_P53_TAD,HMMPfam_P53,superfamily_p53-like transcription factors,PatternScan_P53,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain	-	no_errors
PRSS16	10279	genome.wustl.edu	36	6	27331044	27331058	+	In_Frame_Del	DEL	AAGGAGAGCCAGATT	AAGGAGAGCCAGATT	-	novel	unknown	TCGA-29-1783-01A-01W-0633-09	TCGA-29-1783-10A-01W-0634-09	AAGGAGAGCCAGATT	AAGGAGAGCCAGATT					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	44ea2f32-53d4-4310-a339-7b2de9adcc08	dfba5f76-d9ea-4e47-b9a7-76b427ad3a04	6	27331044	27331058	AAGGAGAGCCAGATT	-	DEL	PRSS16	NM_005865	human	genbank	54_36p	+1	reviewed	in_frame_del	c.1516_1530	p.ESQIK507in_frame_del	0.008:0.021:0.022:0.020:0.048:0.068:0.213:0.244:0.303:0.312:0.297:0.218:0.073:0.000:0.000	NULL	HMMPfam_Peptidase_S28,superfamily_SSF53474	(deletion:cds_exon[27331005,27331073])	no_errors
DGKK	139189	genome.wustl.edu	36	X	50135850	50135851	+	Frame_Shift_Ins	INS	-	-	ACAG	novel	unknown	TCGA-29-1783-01A-01W-0633-09	TCGA-29-1783-10A-01W-0634-09	-	-					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	44ea2f32-53d4-4310-a339-7b2de9adcc08	dfba5f76-d9ea-4e47-b9a7-76b427ad3a04	X	50135850	50135851	-	ACAG	INS	DGKK	ENST00000376025	human	ensembl	54_36p	-1	known	frame_shift_ins	c.3324_3323	p.N1109fs	0.997:1.000	NULL	superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233,superfamily_Cysteine-rich domain,HMMSmart_SM00109,PatternScan_ZF_DAG_PE_1,HMMPfam_C1_1,HMMPfam_DAGK_cat,HMMSmart_SM00046,HMMPfam_DAGK_acc,HMMSmart_SM00045	-	no_errors
TBL1XR1	79718	genome.wustl.edu	36	3	178250557	178250575	+	Frame_Shift_Del	DEL	CTGTGTAGAGCCACTGGTG	CTGTGTAGAGCCACTGGTG	-	novel	unknown	TCGA-29-1783-01A-01W-0633-09	TCGA-29-1783-10A-01W-0634-09	CTGTGTAGAGCCACTGGTG	CTGTGTAGAGCCACTGGTG					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	44ea2f32-53d4-4310-a339-7b2de9adcc08	dfba5f76-d9ea-4e47-b9a7-76b427ad3a04	3	178250557	178250575	CTGTGTAGAGCCACTGGTG	-	DEL	TBL1XR1	NM_024665	human	genbank	54_36p	-1	reviewed	frame_shift_del	c.624_606	p.T203fs	1.000:1.000:1.000:0.917:1.000:1.000:0.994:1.000:1.000:0.998:1.000:1.000:1.000:1.000:0.968:0.169:0.956:0.999:0.999	NULL	HMMSmart_LisH,HMMPfam_LisH,HMMSmart_WD40,superfamily_WD40_like,HMMPfam_WD40,PatternScan_WD_REPEATS_1	(deletion:cds_exon[178250479,178250620])	no_errors