Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error
ZNF721	170960	genome.wustl.edu	36	4	428000	428000	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-36-2552-01A-01D-1526-09	TCGA-36-2552-10A-01D-1526-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	e97a1340-6d99-400d-80c5-141096e642ac	3a2fc426-b531-4bb9-b517-b6bdeaa7d38f	4	428000	428000	G	A	SNP	ZNF721	NM_133474	human	genbank	54_36p	-1	validated	missense	c.256	p.R86C	0.613	superfamily_C2H2 and C2HC zinc fingers	superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
FAM86A	196483	genome.wustl.edu	36	16	5083515	5083515	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-36-2552-01A-01D-1526-09	TCGA-36-2552-10A-01D-1526-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	e97a1340-6d99-400d-80c5-141096e642ac	3a2fc426-b531-4bb9-b517-b6bdeaa7d38f	16	5083515	5083515	G	A	SNP	FAM86A	NM_201400	human	genbank	54_36p	-1	validated	missense	c.211	p.R71W	0.175	NULL	superfamily_S-adenosyl-L-methionine-dependent methyltransferases,HMMPfam_Methyltransf_16	-	no_errors
TRIM5	85363	genome.wustl.edu	36	11	5657591	5657591	+	Silent	SNP	T	T	C	novel	unknown	TCGA-36-2552-01A-01D-1526-09	TCGA-36-2552-10A-01D-1526-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	e97a1340-6d99-400d-80c5-141096e642ac	3a2fc426-b531-4bb9-b517-b6bdeaa7d38f	11	5657591	5657591	T	C	SNP	TRIM5	NM_033034	human	genbank	54_36p	-1	reviewed	silent	c.393	p.T131	0.514	HMMPfam_zf-B_box,HMMSmart_SM00336	superfamily_RING/U-box,HMMSmart_SM00184,HMMPfam_zf-C3HC4,PatternScan_ZF_RING_1,HMMPfam_zf-B_box,HMMSmart_SM00336,HMMPfam_SPRY,HMMSmart_SM00449	-	no_errors
CHD5	26038	genome.wustl.edu	36	1	6114280	6114280	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-36-2552-01A-01D-1526-09	TCGA-36-2552-10A-01D-1526-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	e97a1340-6d99-400d-80c5-141096e642ac	3a2fc426-b531-4bb9-b517-b6bdeaa7d38f	1	6114280	6114280	T	A	SNP	CHD5	NM_015557	human	genbank	54_36p	-1	provisional	missense	c.3260	p.N1087I	0.999	superfamily_SSF52540,HMMSmart_HELICc,HMMPfam_Helicase_C	PatternScan_CHROMO_1,HMMPfam_CHDNT,superfamily_FYVE_PHD_ZnF,HMMSmart_PHD,HMMPfam_PHD,HMMSmart_RING,superfamily_Chromodomain-like,HMMSmart_CHROMO,superfamily_SSF52540,HMMPfam_Chromo,HMMSmart_DEXDc,HMMPfam_SNF2_N,PatternScan_DEAH_ATP_HELICASE,HMMSmart_HELICc,HMMPfam_Helicase_C,HMMPfam_DUF1087,HMMPfam_DUF1086,HMMPfam_CHDCT2	-	no_errors
FAM64A	54478	genome.wustl.edu	36	17	6289191	6289191	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-36-2552-01A-01D-1526-09	TCGA-36-2552-10A-01D-1526-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	e97a1340-6d99-400d-80c5-141096e642ac	3a2fc426-b531-4bb9-b517-b6bdeaa7d38f	17	6289191	6289191	C	A	SNP	FAM64A	NM_019013	human	genbank	54_36p	+1	predicted	missense	c.37	p.R13S	0.018	HMMPfam_DUF1466	HMMPfam_DUF1466	-	no_errors
DCHS1	8642	genome.wustl.edu	36	11	6610387	6610387	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-36-2552-01A-01D-1526-09	TCGA-36-2552-10A-01D-1526-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	e97a1340-6d99-400d-80c5-141096e642ac	3a2fc426-b531-4bb9-b517-b6bdeaa7d38f	11	6610387	6610387	G	A	SNP	DCHS1	NM_003737	human	genbank	54_36p	-1	reviewed	missense	c.2932	p.R978C	1.000	superfamily_Cadherin,HMMPfam_Cadherin,HMMSmart_CA	superfamily_Cadherin,HMMPfam_Cadherin,HMMSmart_CA,PatternScan_CADHERIN_1	-	no_errors
TP53	7157	genome.wustl.edu	36	17	7519000	7519000	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-36-2552-01A-01D-1526-09	TCGA-36-2552-10A-01D-1526-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	e97a1340-6d99-400d-80c5-141096e642ac	3a2fc426-b531-4bb9-b517-b6bdeaa7d38f	17	7519000	7519000	G	A	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	nonsense	c.574	p.Q192*	1.000	HMMPfam_P53,superfamily_p53-like transcription factors	HMMPfam_P53_TAD,HMMPfam_P53,superfamily_p53-like transcription factors,PatternScan_P53,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain	-	no_errors
FBN3	84467	genome.wustl.edu	36	19	8066335	8066335	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-36-2552-01A-01D-1526-09	TCGA-36-2552-10A-01D-1526-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	e97a1340-6d99-400d-80c5-141096e642ac	3a2fc426-b531-4bb9-b517-b6bdeaa7d38f	19	8066335	8066335	G	C	SNP	FBN3	NM_032447	human	genbank	54_36p	-1	reviewed	missense	c.5709	p.C1903W	0.996	superfamily_EGF/Laminin,PatternScan_EGF_CA,HMMPfam_EGF_CA,HMMSmart_SM00179,HMMSmart_SM00181,PatternScan_ASX_HYDROXYL	HMMSmart_SM00181,superfamily_EGF/Laminin,PatternScan_EGF_1,PatternScan_EGF_2,superfamily_TB module/8-cys domain,HMMPfam_TB,PatternScan_EGF_CA,HMMPfam_EGF_CA,HMMSmart_SM00179,PatternScan_ASX_HYDROXYL,HMMPfam_EGF,superfamily_Growth factor receptor domain	-	no_errors
MC2R	4158	genome.wustl.edu	36	18	13874676	13874676	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-36-2552-01A-01D-1526-09	TCGA-36-2552-10A-01D-1526-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	e97a1340-6d99-400d-80c5-141096e642ac	3a2fc426-b531-4bb9-b517-b6bdeaa7d38f	18	13874676	13874676	G	C	SNP	MC2R	NM_000529	human	genbank	54_36p	-1	reviewed	missense	c.842	p.P281R	0.984	superfamily_Family A G protein-coupled receptor-like	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
DNAH5	1767	genome.wustl.edu	36	5	13939208	13939208	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-36-2552-01A-01D-1526-09	TCGA-36-2552-10A-01D-1526-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	e97a1340-6d99-400d-80c5-141096e642ac	3a2fc426-b531-4bb9-b517-b6bdeaa7d38f	5	13939208	13939208	G	A	SNP	DNAH5	NM_001369	human	genbank	54_36p	-1	validated	missense	c.2608	p.H870Y	0.979	NULL	HMMPfam_DHC_N1,superfamily_Spectrin,HMMPfam_DHC_N2,superfamily_SSF52540,HMMSmart_AAA,HMMPfam_AAA_5,HMMPfam_Dynein_heavy	-	no_errors
SSBP4	170463	genome.wustl.edu	36	19	18403826	18403826	+	Silent	SNP	C	C	T	novel	unknown	TCGA-36-2552-01A-01D-1526-09	TCGA-36-2552-10A-01D-1526-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	e97a1340-6d99-400d-80c5-141096e642ac	3a2fc426-b531-4bb9-b517-b6bdeaa7d38f	19	18403826	18403826	C	T	SNP	SSBP4	NM_032627	human	genbank	54_36p	+1	validated	silent	c.582	p.G194	0.983	HMMPfam_SSDP	HMMSmart_LisH,HMMPfam_SSDP	-	no_errors
HS3ST2	9956	genome.wustl.edu	36	16	22833894	22833894	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-36-2552-01A-01D-1526-09	TCGA-36-2552-10A-01D-1526-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	e97a1340-6d99-400d-80c5-141096e642ac	3a2fc426-b531-4bb9-b517-b6bdeaa7d38f	16	22833894	22833894	G	A	SNP	HS3ST2	NM_006043	human	genbank	54_36p	+1	reviewed	missense	c.614	p.R205Q	1.000	superfamily_SSF52540,HMMPfam_Sulfotransfer_1	superfamily_SSF52540,HMMPfam_Sulfotransfer_1	-	no_errors
NEFM	4741	genome.wustl.edu	36	8	24827823	24827823	+	Silent	SNP	C	C	T	novel	unknown	TCGA-36-2552-01A-01D-1526-09	TCGA-36-2552-10A-01D-1526-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	e97a1340-6d99-400d-80c5-141096e642ac	3a2fc426-b531-4bb9-b517-b6bdeaa7d38f	8	24827823	24827823	C	T	SNP	NEFM	NM_005382	human	genbank	54_36p	+1	reviewed	silent	c.612	p.R204	1.000	HMMPfam_Filament	HMMPfam_Filament_head,HMMPfam_Filament,PatternScan_IF	-	no_errors
ZNF322A	79692	genome.wustl.edu	36	6	26746612	26746612	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-36-2552-01A-01D-1526-09	TCGA-36-2552-10A-01D-1526-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	e97a1340-6d99-400d-80c5-141096e642ac	3a2fc426-b531-4bb9-b517-b6bdeaa7d38f	6	26746612	26746612	T	C	SNP	ZNF322A	NM_024639	human	genbank	54_36p	-1	validated	missense	c.149	p.Q50R	0.996	superfamily_SSF57667,HMMSmart_ZnF_C2H2	superfamily_SSF57667,HMMSmart_ZnF_C2H2,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
ZKSCAN4	387032	genome.wustl.edu	36	6	28322765	28322765	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-36-2552-01A-01D-1526-09	TCGA-36-2552-10A-01D-1526-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	e97a1340-6d99-400d-80c5-141096e642ac	3a2fc426-b531-4bb9-b517-b6bdeaa7d38f	6	28322765	28322765	C	A	SNP	ZKSCAN4	NM_019110	human	genbank	54_36p	-1	provisional	missense	c.739	p.D247Y	0.009	superfamily_Krueppel-associated_box,HMMPfam_KRAB,HMMSmart_KRAB	HMMPfam_SCAN,HMMSmart_SCAN,superfamily_Krueppel-associated_box,HMMPfam_KRAB,HMMSmart_KRAB,superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
PRKD1	5587	genome.wustl.edu	36	14	29175262	29175262	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-36-2552-01A-01D-1526-09	TCGA-36-2552-10A-01D-1526-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	e97a1340-6d99-400d-80c5-141096e642ac	3a2fc426-b531-4bb9-b517-b6bdeaa7d38f	14	29175262	29175262	G	C	SNP	PRKD1	NM_002742	human	genbank	54_36p	-1	validated	missense	c.1175	p.A392G	1.000	NULL	superfamily_SSF57889,HMMSmart_C1,PatternScan_ZF_DAG_PE_1,HMMPfam_C1_1,superfamily_SSF50729,HMMPfam_PH,HMMSmart_PH,superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST	-	no_errors
PCDH7	5099	genome.wustl.edu	36	4	30334459	30334459	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-36-2552-01A-01D-1526-09	TCGA-36-2552-10A-01D-1526-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	e97a1340-6d99-400d-80c5-141096e642ac	3a2fc426-b531-4bb9-b517-b6bdeaa7d38f	4	30334459	30334459	G	A	SNP	PCDH7	NM_032457	human	genbank	54_36p	+1	reviewed	missense	c.2176	p.D726N	1.000	superfamily_Cadherin,HMMPfam_Cadherin,HMMSmart_CA	HMMPfam_Cadherin_2,HMMSmart_CA,PatternScan_CADHERIN_1,superfamily_Cadherin,HMMPfam_Cadherin,HMMPfam_Protocadherin	-	no_errors
ASXL1	171023	genome.wustl.edu	36	20	30486930	30486930	+	Silent	SNP	C	C	T	novel	unknown	TCGA-36-2552-01A-01D-1526-09	TCGA-36-2552-10A-01D-1526-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	e97a1340-6d99-400d-80c5-141096e642ac	3a2fc426-b531-4bb9-b517-b6bdeaa7d38f	20	30486930	30486930	C	T	SNP	ASXL1	NM_015338	human	genbank	54_36p	+1	reviewed	silent	c.2754	p.H918	0.000	NULL	NULL	-	no_errors
BAT2	7916	genome.wustl.edu	36	6	31712040	31712040	+	Silent	SNP	G	G	A	novel	unknown	TCGA-36-2552-01A-01D-1526-09	TCGA-36-2552-10A-01D-1526-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	e97a1340-6d99-400d-80c5-141096e642ac	3a2fc426-b531-4bb9-b517-b6bdeaa7d38f	6	31712040	31712040	G	A	SNP	BAT2	NM_080686	human	genbank	54_36p	+1	reviewed	silent	c.5700	p.Q1900	1.000	NULL	HMMPfam_BAT2_N	-	no_errors
LOC642305	642305	genome.wustl.edu	36	4	32689438	32689438	+	RNA	SNP	T	T	C	novel	unknown	TCGA-36-2552-01A-01D-1526-09	TCGA-36-2552-10A-01D-1526-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	e97a1340-6d99-400d-80c5-141096e642ac	3a2fc426-b531-4bb9-b517-b6bdeaa7d38f	4	32689438	32689438	T	C	SNP	LOC642305	XR_042368	human	genbank	54_36p	-1	model	rna	NULL	NULL	1.000	-	-	-	pseudogene
uc001wtp.2	0	genome.wustl.edu	36	14	35910384	35910384	+	Silent	SNP	G	G	A	novel	unknown	TCGA-36-2552-01A-01D-1526-09	TCGA-36-2552-10A-01D-1526-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	e97a1340-6d99-400d-80c5-141096e642ac	3a2fc426-b531-4bb9-b517-b6bdeaa7d38f	14	35910384	35910384	G	A	SNP	uc001wtp.2	ENST00000340350	human	ensembl	54_36p	+1	known	silent	c.15	p.Q5	0.000	NULL	NULL	-	no_errors
TGM5	9333	genome.wustl.edu	36	15	41314363	41314363	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-36-2552-01A-01D-1526-09	TCGA-36-2552-10A-01D-1526-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	e97a1340-6d99-400d-80c5-141096e642ac	3a2fc426-b531-4bb9-b517-b6bdeaa7d38f	15	41314363	41314363	C	G	SNP	TGM5	NM_201631	human	genbank	54_36p	-1	validated	missense	c.1771	p.D591H	0.994	superfamily_Transglutaminase two C-terminal domains,HMMPfam_Transglut_C	superfamily_E set domains,HMMPfam_Transglut_N,superfamily_Cysteine proteinases,HMMSmart_SM00460,HMMPfam_Transglut_core,PatternScan_TRANSGLUTAMINASES,superfamily_Transglutaminase two C-terminal domains,HMMPfam_Transglut_C	-	no_errors
TGM5	9333	genome.wustl.edu	36	15	41315306	41315306	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-36-2552-01A-01D-1526-09	TCGA-36-2552-10A-01D-1526-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	e97a1340-6d99-400d-80c5-141096e642ac	3a2fc426-b531-4bb9-b517-b6bdeaa7d38f	15	41315306	41315306	A	C	SNP	TGM5	NM_201631	human	genbank	54_36p	-1	validated	missense	c.1367	p.V456G	0.752	superfamily_Cysteine proteinases	HMMPfam_Transglut_N,HMMPfam_Transglut_core,HMMSmart_SM00460,HMMPfam_Transglut_C,superfamily_Transglutaminase two C-terminal domains,PatternScan_TRANSGLUTAMINASES,superfamily_E set domains,superfamily_Cysteine proteinases	-	no_errors
KPNB1	3837	genome.wustl.edu	36	17	43110730	43110730	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-36-2552-01A-01D-1526-09	TCGA-36-2552-10A-01D-1526-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	e97a1340-6d99-400d-80c5-141096e642ac	3a2fc426-b531-4bb9-b517-b6bdeaa7d38f	17	43110730	43110730	T	C	SNP	KPNB1	NM_002265	human	genbank	54_36p	+1	reviewed	missense	c.2305	p.Y769H	1.000	superfamily_ARM repeat	superfamily_ARM repeat,HMMPfam_IBN_N,HMMPfam_HEAT,HMMSmart_SM00185	-	no_errors
NNT	23530	genome.wustl.edu	36	5	43648975	43648975	+	Silent	SNP	G	G	T	novel	unknown	TCGA-36-2552-01A-01D-1526-09	TCGA-36-2552-10A-01D-1526-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	e97a1340-6d99-400d-80c5-141096e642ac	3a2fc426-b531-4bb9-b517-b6bdeaa7d38f	5	43648975	43648975	G	T	SNP	NNT	NM_012343	human	genbank	54_36p	+1	reviewed	silent	c.360	p.L120	1.000	superfamily_SSF52283,HMMPfam_AlaDh_PNT_N	superfamily_SSF52283,PatternScan_ALADH_PNT_1,HMMPfam_AlaDh_PNT_N,superfamily_NAD(P)-bd,HMMPfam_AlaDh_PNT_C,PatternScan_ALADH_PNT_2,HMMPfam_PNTB,superfamily_SSF52467	-	no_errors
CELSR1	9620	genome.wustl.edu	36	22	45166234	45166234	+	Silent	SNP	G	G	A	novel	unknown	TCGA-36-2552-01A-01D-1526-09	TCGA-36-2552-10A-01D-1526-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	e97a1340-6d99-400d-80c5-141096e642ac	3a2fc426-b531-4bb9-b517-b6bdeaa7d38f	22	45166234	45166234	G	A	SNP	CELSR1	NM_014246	human	genbank	54_36p	-1	reviewed	silent	c.6108	p.C2036	0.992	superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_EGF,HMMSmart_SM00180,superfamily_EGF/Laminin,PatternScan_EGF_LAM_1	superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,superfamily_EGF/Laminin,HMMSmart_SM00181,HMMPfam_EGF,PatternScan_EGF_1,PatternScan_EGF_2,HMMSmart_SM00179,superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00282,HMMPfam_Laminin_G_2,PatternScan_ASX_HYDROXYL,HMMPfam_Laminin_EGF,HMMSmart_SM00180,PatternScan_EGF_LAM_1,HMMSmart_SM00008,HMMPfam_HRM,HMMPfam_GPS,HMMSmart_SM00303,HMMPfam_7tm_2	-	no_errors
GPR110	266977	genome.wustl.edu	36	6	47096446	47096446	+	Silent	SNP	C	C	A	novel	unknown	TCGA-36-2552-01A-01D-1526-09	TCGA-36-2552-10A-01D-1526-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	e97a1340-6d99-400d-80c5-141096e642ac	3a2fc426-b531-4bb9-b517-b6bdeaa7d38f	6	47096446	47096446	C	A	SNP	GPR110	NM_153840	human	genbank	54_36p	-1	validated	silent	c.591	p.S197	0.340	superfamily_SEA domain,HMMPfam_SEA	superfamily_SEA domain,HMMPfam_SEA,HMMPfam_GPS,HMMSmart_SM00303,HMMPfam_7tm_2	-	no_errors
DEFB111	245914	genome.wustl.edu	36	6	50094655	50094655	+	Silent	SNP	C	C	T	novel	unknown	TCGA-36-2552-01A-01D-1526-09	TCGA-36-2552-10A-01D-1526-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	e97a1340-6d99-400d-80c5-141096e642ac	3a2fc426-b531-4bb9-b517-b6bdeaa7d38f	6	50094655	50094655	C	T	SNP	DEFB111	NM_001037497	human	genbank	54_36p	-1	provisional	silent	c.198	p.Q66	0.003	NULL	HMMPfam_Defensin_beta	-	no_errors
PODN	127435	genome.wustl.edu	36	1	53308296	53308296	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-36-2552-01A-01D-1526-09	TCGA-36-2552-10A-01D-1526-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	e97a1340-6d99-400d-80c5-141096e642ac	3a2fc426-b531-4bb9-b517-b6bdeaa7d38f	1	53308296	53308296	C	T	SNP	PODN	NM_153703	human	genbank	54_36p	+1	validated	missense	c.325	p.P109S	0.002	superfamily_SSF52058	superfamily_SSF52058,HMMPfam_LRRNT,HMMSmart_LRRNT,HMMSmart_LRR_TYP,HMMPfam_LRR_1,superfamily_SSF52047	-	no_errors
MMP2	4313	genome.wustl.edu	36	16	54089805	54089805	+	Silent	SNP	C	C	T	novel	unknown	TCGA-36-2552-01A-01D-1526-09	TCGA-36-2552-10A-01D-1526-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	e97a1340-6d99-400d-80c5-141096e642ac	3a2fc426-b531-4bb9-b517-b6bdeaa7d38f	16	54089805	54089805	C	T	SNP	MMP2	NM_004530	human	genbank	54_36p	+1	reviewed	silent	c.1713	p.A571	0.891	superfamily_Hemopexin,HMMPfam_Hemopexin,HMMSmart_HX	superfamily_PGBD_like,HMMPfam_PG_binding_1,PatternScan_CYSTEINE_SWITCH,superfamily_SSF55486,HMMSmart_ZnMc,HMMPfam_Peptidase_M10,superfamily_Kringle-like,HMMSmart_FN2,HMMPfam_fn2,PatternScan_FN2_1,PatternScan_ZINC_PROTEASE,superfamily_Hemopexin,HMMPfam_Hemopexin,HMMSmart_HX,PatternScan_HEMOPEXIN	-	no_errors
VSTM2A	222008	genome.wustl.edu	36	7	54579897	54579897	+	Silent	SNP	G	G	A	novel	unknown	TCGA-36-2552-01A-01D-1526-09	TCGA-36-2552-10A-01D-1526-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	e97a1340-6d99-400d-80c5-141096e642ac	3a2fc426-b531-4bb9-b517-b6bdeaa7d38f	7	54579897	54579897	G	A	SNP	VSTM2A	NM_182546	human	genbank	54_36p	+1	validated	silent	c.168	p.S56	0.929	HMMPfam_V-set,superfamily_SSF48726,HMMSmart_IG	HMMPfam_V-set,superfamily_SSF48726,HMMSmart_IG	-	no_errors
SCAF1	58506	genome.wustl.edu	36	19	54847778	54847778	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-36-2552-01A-01D-1526-09	TCGA-36-2552-10A-01D-1526-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	e97a1340-6d99-400d-80c5-141096e642ac	3a2fc426-b531-4bb9-b517-b6bdeaa7d38f	19	54847778	54847778	G	T	SNP	SCAF1	NM_021228	human	genbank	54_36p	+1	provisional	missense	c.2320	p.D774Y	0.093	NULL	NULL	-	no_errors
USP32	84669	genome.wustl.edu	36	17	55613472	55613472	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-36-2552-01A-01D-1526-09	TCGA-36-2552-10A-01D-1526-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	e97a1340-6d99-400d-80c5-141096e642ac	3a2fc426-b531-4bb9-b517-b6bdeaa7d38f	17	55613472	55613472	T	C	SNP	USP32	NM_032582	human	genbank	54_36p	-1	validated	missense	c.4543	p.I1515V	1.000	superfamily_SSF54001,HMMPfam_UCH,PatternScan_UCH_2_2	superfamily_SSF47473,HMMSmart_EFh,PatternScan_EF_HAND_1,HMMPfam_efhand,HMMSmart_DUSP,HMMPfam_DUF1055,superfamily_SSF54001,HMMPfam_UCH,PatternScan_UCH_2_1,PatternScan_UCH_2_2	-	no_errors
KDR	3791	genome.wustl.edu	36	4	55658690	55658690	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-36-2552-01A-01D-1526-09	TCGA-36-2552-10A-01D-1526-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	e97a1340-6d99-400d-80c5-141096e642ac	3a2fc426-b531-4bb9-b517-b6bdeaa7d38f	4	55658690	55658690	C	T	SNP	KDR	NM_002253	human	genbank	54_36p	-1	validated	missense	c.2510	p.G837D	1.000	superfamily_Kinase_like,HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc	superfamily_SSF48726,HMMSmart_IG,HMMPfam_V-set,HMMPfam_I-set,HMMSmart_IGc2,HMMPfam_ig,superfamily_Kinase_like,HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,PatternScan_PROTEIN_KINASE_ATP,PatternScan_RECEPTOR_TYR_KIN_III,PatternScan_PROTEIN_KINASE_TYR	-	no_errors
MOS	4342	genome.wustl.edu	36	8	57188890	57188890	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-36-2552-01A-01D-1526-09	TCGA-36-2552-10A-01D-1526-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	e97a1340-6d99-400d-80c5-141096e642ac	3a2fc426-b531-4bb9-b517-b6bdeaa7d38f	8	57188890	57188890	C	G	SNP	MOS	NM_005372	human	genbank	54_36p	-1	validated	missense	c.206	p.G69A	0.986	superfamily_Kinase_like,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP	superfamily_Kinase_like,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST	-	no_errors
DTX4	23220	genome.wustl.edu	36	11	58705868	58705868	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-36-2552-01A-01D-1526-09	TCGA-36-2552-10A-01D-1526-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	e97a1340-6d99-400d-80c5-141096e642ac	3a2fc426-b531-4bb9-b517-b6bdeaa7d38f	11	58705868	58705868	G	A	SNP	DTX4	NM_015177	human	genbank	54_36p	+1	validated	missense	c.292	p.D98N	1.000	HMMPfam_WWE,HMMSmart_SM00678	HMMPfam_WWE,HMMSmart_SM00678,superfamily_RING/U-box,HMMSmart_SM00184,HMMPfam_zf-C3HC4	-	no_errors
VPS13C	54832	genome.wustl.edu	36	15	59988609	59988609	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-36-2552-01A-01D-1526-09	TCGA-36-2552-10A-01D-1526-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	e97a1340-6d99-400d-80c5-141096e642ac	3a2fc426-b531-4bb9-b517-b6bdeaa7d38f	15	59988609	59988609	C	T	SNP	VPS13C	NM_020821	human	genbank	54_36p	-1	validated	missense	c.8852	p.G2951D	0.954	HMMPfam_DUF1162	HMMPfam_DUF1162	-	no_errors
FIZ1	84922	genome.wustl.edu	36	19	60796625	60796625	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-36-2552-01A-01D-1526-09	TCGA-36-2552-10A-01D-1526-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	e97a1340-6d99-400d-80c5-141096e642ac	3a2fc426-b531-4bb9-b517-b6bdeaa7d38f	19	60796625	60796625	C	T	SNP	FIZ1	NM_032836	human	genbank	54_36p	-1	reviewed	missense	c.494	p.G165D	0.013	NULL	superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1,PatternScan_2FE2S_FER_1	-	no_errors
UBA6	55236	genome.wustl.edu	36	4	68183864	68183864	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-36-2552-01A-01D-1526-09	TCGA-36-2552-10A-01D-1526-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	e97a1340-6d99-400d-80c5-141096e642ac	3a2fc426-b531-4bb9-b517-b6bdeaa7d38f	4	68183864	68183864	A	T	SNP	UBA6	NM_018227	human	genbank	54_36p	-1	validated	missense	c.1744	p.L582I	1.000	superfamily_Activating enzymes of the ubiquitin-like proteins,HMMPfam_ThiF	superfamily_Activating enzymes of the ubiquitin-like proteins,HMMPfam_ThiF,HMMPfam_UBA_e1_thiolCys,HMMPfam_UBACT,HMMPfam_UBA_e1_C	-	no_errors
ZNF638	27332	genome.wustl.edu	36	2	71508022	71508022	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-36-2552-01A-01D-1526-09	TCGA-36-2552-10A-01D-1526-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	e97a1340-6d99-400d-80c5-141096e642ac	3a2fc426-b531-4bb9-b517-b6bdeaa7d38f	2	71508022	71508022	C	A	SNP	ZNF638	NM_001014972	human	genbank	54_36p	+1	reviewed	missense	c.5515	p.L1839I	0.981	NULL	HMMSmart_SM00451,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1,superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1	-	no_errors
SMAP1	60682	genome.wustl.edu	36	6	71521477	71521477	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-36-2552-01A-01D-1526-09	TCGA-36-2552-10A-01D-1526-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	e97a1340-6d99-400d-80c5-141096e642ac	3a2fc426-b531-4bb9-b517-b6bdeaa7d38f	6	71521477	71521477	C	G	SNP	SMAP1	NM_001044305	human	genbank	54_36p	+1	reviewed	missense	c.326	p.P109R	1.000	superfamily_Pyk2-associated protein beta ARF-GAP domain,HMMPfam_ArfGap,HMMSmart_SM00105	superfamily_Pyk2-associated protein beta ARF-GAP domain,HMMPfam_ArfGap,HMMSmart_SM00105	-	no_errors
RHBDF2	79651	genome.wustl.edu	36	17	71987004	71987004	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-36-2552-01A-01D-1526-09	TCGA-36-2552-10A-01D-1526-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	e97a1340-6d99-400d-80c5-141096e642ac	3a2fc426-b531-4bb9-b517-b6bdeaa7d38f	17	71987004	71987004	G	A	SNP	RHBDF2	ENST00000389762	human	ensembl	54_36p	-1	known	missense	c.148	p.H50Y	0.011	NULL	HMMPfam_Rhomboid	-	no_start_codon
LOXL3	84695	genome.wustl.edu	36	2	74617525	74617525	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-36-2552-01A-01D-1526-09	TCGA-36-2552-10A-01D-1526-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	e97a1340-6d99-400d-80c5-141096e642ac	3a2fc426-b531-4bb9-b517-b6bdeaa7d38f	2	74617525	74617525	T	C	SNP	LOXL3	NM_032603	human	genbank	54_36p	-1	reviewed	missense	c.731	p.H244R	1.000	HMMSmart_SR,superfamily_Srcr_receptor,HMMPfam_SRCR	superfamily_Srcr_receptor,HMMSmart_SR,HMMPfam_SRCR,PatternScan_SRCR_1,HMMPfam_Lysyl_oxidase,PatternScan_LYSYL_OXIDASE	-	no_errors
TTC18	118491	genome.wustl.edu	36	10	74777968	74777968	+	Silent	SNP	C	C	T	novel	unknown	TCGA-36-2552-01A-01D-1526-09	TCGA-36-2552-10A-01D-1526-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	e97a1340-6d99-400d-80c5-141096e642ac	3a2fc426-b531-4bb9-b517-b6bdeaa7d38f	10	74777968	74777968	C	T	SNP	TTC18	NM_145170	human	genbank	54_36p	-1	provisional	silent	c.381	p.L127	0.900	NULL	HMMSmart_SM00028,superfamily_TPR-like,HMMPfam_TPR_1	-	no_errors
MYCBP2	23077	genome.wustl.edu	36	13	76523230	76523230	+	Silent	SNP	A	A	G	novel	unknown	TCGA-36-2552-01A-01D-1526-09	TCGA-36-2552-10A-01D-1526-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	e97a1340-6d99-400d-80c5-141096e642ac	3a2fc426-b531-4bb9-b517-b6bdeaa7d38f	13	76523230	76523230	A	G	SNP	MYCBP2	NM_015057	human	genbank	54_36p	-1	validated	silent	c.13710	p.F4570	1.000	NULL	superfamily_RCC1/BLIP-II,PatternScan_RCC1_2,HMMPfam_RCC1,HMMPfam_PHR,superfamily_E set domains,superfamily_Galactose-binding domain-like,superfamily_RING/U-box,HMMSmart_SM00184	-	no_errors
MYO6	4646	genome.wustl.edu	36	6	76629104	76629104	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-36-2552-01A-01D-1526-09	TCGA-36-2552-10A-01D-1526-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	e97a1340-6d99-400d-80c5-141096e642ac	3a2fc426-b531-4bb9-b517-b6bdeaa7d38f	6	76629104	76629104	G	T	SNP	MYO6	NM_004999	human	genbank	54_36p	+1	reviewed	missense	c.1618	p.D540Y	1.000	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00242,HMMPfam_Myosin_head	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00242,HMMPfam_Myosin_head,HMMPfam_IQ	-	no_errors
LOC642585	0	genome.wustl.edu	36	X	80071819	80071819	+	RNA	SNP	G	A	A	novel	unknown	TCGA-36-2552-01A-01D-1526-09	TCGA-36-2552-10A-01D-1526-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	e97a1340-6d99-400d-80c5-141096e642ac	3a2fc426-b531-4bb9-b517-b6bdeaa7d38f	X	80071819	80071819	G	A	SNP	LOC642585	XR_038848	human	genbank	54_36p	+1	model	rna	NULL	NULL	1.000	-	-	-	pseudogene
PAQR3	152559	genome.wustl.edu	36	4	80079343	80079343	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-36-2552-01A-01D-1526-09	TCGA-36-2552-10A-01D-1526-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	e97a1340-6d99-400d-80c5-141096e642ac	3a2fc426-b531-4bb9-b517-b6bdeaa7d38f	4	80079343	80079343	C	T	SNP	PAQR3	NM_001040202	human	genbank	54_36p	-1	validated	nonsense	c.60	p.W20*	1.000	NULL	HMMPfam_HlyIII	-	no_errors
CCDC81	60494	genome.wustl.edu	36	11	85797973	85797973	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-36-2552-01A-01D-1526-09	TCGA-36-2552-10A-01D-1526-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	e97a1340-6d99-400d-80c5-141096e642ac	3a2fc426-b531-4bb9-b517-b6bdeaa7d38f	11	85797973	85797973	A	T	SNP	CCDC81	NM_021827	human	genbank	54_36p	+1	provisional	missense	c.866	p.E289V	0.989	NULL	NULL	-	no_errors
TGFBR3	7049	genome.wustl.edu	36	1	91921903	91921903	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-36-2552-01A-01D-1526-09	TCGA-36-2552-10A-01D-1526-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	e97a1340-6d99-400d-80c5-141096e642ac	3a2fc426-b531-4bb9-b517-b6bdeaa7d38f	1	91921903	91921903	G	T	SNP	TGFBR3	NM_003243	human	genbank	54_36p	-1	validated	missense	c.2537	p.S846Y	1.000	NULL	HMMPfam_Zona_pellucida,HMMSmart_ZP,PatternScan_ZP_1	-	no_errors
TGFBR3	7049	genome.wustl.edu	36	1	91954804	91954804	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-36-2552-01A-01D-1526-09	TCGA-36-2552-10A-01D-1526-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	e97a1340-6d99-400d-80c5-141096e642ac	3a2fc426-b531-4bb9-b517-b6bdeaa7d38f	1	91954804	91954804	C	G	SNP	TGFBR3	NM_003243	human	genbank	54_36p	-1	validated	missense	c.1616	p.G539A	1.000	HMMPfam_Zona_pellucida,HMMSmart_ZP	HMMPfam_Zona_pellucida,HMMSmart_ZP,PatternScan_ZP_1	-	no_errors
CKAP4	10970	genome.wustl.edu	36	12	105165418	105165418	+	Silent	SNP	G	T	T	novel	unknown	TCGA-36-2552-01A-01D-1526-09	TCGA-36-2552-10A-01D-1526-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	e97a1340-6d99-400d-80c5-141096e642ac	3a2fc426-b531-4bb9-b517-b6bdeaa7d38f	12	105165418	105165418	G	T	SNP	CKAP4	NM_006825	human	genbank	54_36p	-1	validated	silent	c.342	p.L114	0.991	NULL	NULL	-	no_errors
DUS4L	11062	genome.wustl.edu	36	7	107005203	107005203	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-36-2552-01A-01D-1526-09	TCGA-36-2552-10A-01D-1526-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	e97a1340-6d99-400d-80c5-141096e642ac	3a2fc426-b531-4bb9-b517-b6bdeaa7d38f	7	107005203	107005203	G	C	SNP	DUS4L	NM_181581	human	genbank	54_36p	+1	validated	missense	c.916	p.A306P	1.000	superfamily_FMN-linked oxidoreductases,HMMPfam_Dus	superfamily_FMN-linked oxidoreductases,HMMPfam_Dus,PatternScan_UPF0034	-	no_errors
PRPF38B	55119	genome.wustl.edu	36	1	109043838	109043838	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-36-2552-01A-01D-1526-09	TCGA-36-2552-10A-01D-1526-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	e97a1340-6d99-400d-80c5-141096e642ac	3a2fc426-b531-4bb9-b517-b6bdeaa7d38f	1	109043838	109043838	G	C	SNP	PRPF38B	NM_018061	human	genbank	54_36p	+1	validated	missense	c.1314	p.R438S	1.000	NULL	HMMPfam_PRP38	-	no_errors
ADPRHL1	113622	genome.wustl.edu	36	13	113155616	113155616	+	Silent	SNP	G	G	A	novel	unknown	TCGA-36-2552-01A-01D-1526-09	TCGA-36-2552-10A-01D-1526-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	e97a1340-6d99-400d-80c5-141096e642ac	3a2fc426-b531-4bb9-b517-b6bdeaa7d38f	13	113155616	113155616	G	A	SNP	ADPRHL1	NM_138430	human	genbank	54_36p	-1	validated	silent	c.138	p.L46	0.964	superfamily_ADP-ribosylglycohydrolase,HMMPfam_ADP_ribosyl_GH	superfamily_ADP-ribosylglycohydrolase,HMMPfam_ADP_ribosyl_GH	-	no_errors
SFXN4	119559	genome.wustl.edu	36	10	120910425	120910425	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-36-2552-01A-01D-1526-09	TCGA-36-2552-10A-01D-1526-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	e97a1340-6d99-400d-80c5-141096e642ac	3a2fc426-b531-4bb9-b517-b6bdeaa7d38f	10	120910425	120910425	C	A	SNP	SFXN4	NM_213649	human	genbank	54_36p	-1	validated	missense	c.326	p.R109L	0.960	HMMPfam_Mtc	HMMPfam_Mtc	-	no_errors
GOLGB1	2804	genome.wustl.edu	36	3	122895677	122895677	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-36-2552-01A-01D-1526-09	TCGA-36-2552-10A-01D-1526-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	e97a1340-6d99-400d-80c5-141096e642ac	3a2fc426-b531-4bb9-b517-b6bdeaa7d38f	3	122895677	122895677	A	C	SNP	GOLGB1	NM_004487	human	genbank	54_36p	-1	validated	missense	c.6368	p.L2123R	0.987	NULL	superfamily_Spectrin repeat,superfamily_Prefoldin,HMMSmart_SM00340	-	no_errors
TR2IT1	645840	genome.wustl.edu	36	3	127773994	127773994	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-36-2552-01A-01D-1526-09	TCGA-36-2552-10A-01D-1526-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	e97a1340-6d99-400d-80c5-141096e642ac	3a2fc426-b531-4bb9-b517-b6bdeaa7d38f	3	127773994	127773994	C	A	SNP	TR2IT1	NM_001039783	human	genbank	54_36p	-1	predicted	missense	c.83	p.R28L	0.000	NULL	PatternScan_TUBULIN_B_AUTOREG	-	no_errors
OPCML	4978	genome.wustl.edu	36	11	131904259	131904259	+	Silent	SNP	G	G	A	novel	unknown	TCGA-36-2552-01A-01D-1526-09	TCGA-36-2552-10A-01D-1526-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	e97a1340-6d99-400d-80c5-141096e642ac	3a2fc426-b531-4bb9-b517-b6bdeaa7d38f	11	131904259	131904259	G	A	SNP	OPCML	NM_002545	human	genbank	54_36p	-1	reviewed	silent	c.432	p.D144	0.983	superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409	HMMPfam_V-set,superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_I-set,HMMPfam_ig	-	no_errors
B3GAT1	27087	genome.wustl.edu	36	11	133758077	133758077	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-36-2552-01A-01D-1526-09	TCGA-36-2552-10A-01D-1526-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	e97a1340-6d99-400d-80c5-141096e642ac	3a2fc426-b531-4bb9-b517-b6bdeaa7d38f	11	133758077	133758077	C	T	SNP	B3GAT1	NM_018644	human	genbank	54_36p	-1	reviewed	missense	c.655	p.V219I	0.800	superfamily_SSF53448,HMMPfam_Glyco_transf_43	superfamily_SSF53448,HMMPfam_Glyco_transf_43	-	no_errors
HBS1L	10767	genome.wustl.edu	36	6	135329196	135329196	+	Silent	SNP	G	G	A	novel	unknown	TCGA-36-2552-01A-01D-1526-09	TCGA-36-2552-10A-01D-1526-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	e97a1340-6d99-400d-80c5-141096e642ac	3a2fc426-b531-4bb9-b517-b6bdeaa7d38f	6	135329196	135329196	G	A	SNP	HBS1L	NM_006620	human	genbank	54_36p	-1	validated	silent	c.2007	p.Y669	0.999	HMMPfam_GTP_EFTU_D3,superfamily_EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain	HMMPfam_DUF1916,superfamily_HBS1-like domain,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_GTP_EFTU,superfamily_Translation proteins,HMMPfam_GTP_EFTU_D2,HMMPfam_GTP_EFTU_D3,superfamily_EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain	-	no_errors
LOC392100	392100	genome.wustl.edu	36	7	136049854	136049854	+	RNA	SNP	C	C	G	novel	unknown	TCGA-36-2552-01A-01D-1526-09	TCGA-36-2552-10A-01D-1526-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	e97a1340-6d99-400d-80c5-141096e642ac	3a2fc426-b531-4bb9-b517-b6bdeaa7d38f	7	136049854	136049854	C	G	SNP	LOC392100	XR_017485	human	genbank	54_36p	+1	model	rna	NULL	NULL	0.996	-	-	-	pseudogene
SCRIB	23513	genome.wustl.edu	36	8	144967084	144967084	+	Silent	SNP	G	G	A	novel	unknown	TCGA-36-2552-01A-01D-1526-09	TCGA-36-2552-10A-01D-1526-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	e97a1340-6d99-400d-80c5-141096e642ac	3a2fc426-b531-4bb9-b517-b6bdeaa7d38f	8	144967084	144967084	G	A	SNP	SCRIB	NM_182706	human	genbank	54_36p	-1	validated	silent	c.678	p.D226	0.991	superfamily_RNI-like,HMMSmart_SM00364,HMMSmart_SM00369,HMMPfam_LRR_1	superfamily_RNI-like,HMMSmart_SM00364,HMMPfam_LRR_1,HMMSmart_SM00369,superfamily_PDZ domain-like,HMMPfam_PDZ,HMMSmart_SM00228	-	no_errors
MPP1	4354	genome.wustl.edu	36	X	153673252	153673252	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-36-2552-01A-01D-1526-09	TCGA-36-2552-10A-01D-1526-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	e97a1340-6d99-400d-80c5-141096e642ac	3a2fc426-b531-4bb9-b517-b6bdeaa7d38f	X	153673252	153673252	A	C	SNP	MPP1	NM_002436	human	genbank	54_36p	-1	reviewed	missense	c.311	p.M104R	1.000	superfamily_PDZ domain-like,HMMPfam_PDZ,HMMSmart_SM00228	superfamily_PDZ domain-like,HMMPfam_PDZ,HMMSmart_SM00228,superfamily_SH3-domain,HMMSmart_SM00326,HMMPfam_SH3_2,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00072,PatternScan_GUANYLATE_KINASE_1,HMMPfam_Guanylate_kin	-	no_errors
RBM46	166863	genome.wustl.edu	36	4	155939585	155939585	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-36-2552-01A-01D-1526-09	TCGA-36-2552-10A-01D-1526-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	e97a1340-6d99-400d-80c5-141096e642ac	3a2fc426-b531-4bb9-b517-b6bdeaa7d38f	4	155939585	155939585	C	G	SNP	RBM46	NM_144979	human	genbank	54_36p	+1	validated	missense	c.821	p.A274G	1.000	superfamily_SSF54928,HMMSmart_RRM,HMMPfam_RRM_1	superfamily_SSF54928,HMMSmart_RRM,HMMPfam_RRM_1	-	no_errors
HK3	3101	genome.wustl.edu	36	5	176249318	176249318	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-36-2552-01A-01D-1526-09	TCGA-36-2552-10A-01D-1526-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	e97a1340-6d99-400d-80c5-141096e642ac	3a2fc426-b531-4bb9-b517-b6bdeaa7d38f	5	176249318	176249318	C	T	SNP	HK3	NM_002115	human	genbank	54_36p	-1	reviewed	missense	c.664	p.D222N	1.000	superfamily_SSF53067,HMMPfam_Hexokinase_1	superfamily_SSF53067,HMMPfam_Hexokinase_1,HMMPfam_Hexokinase_2,PatternScan_HEXOKINASES	-	no_errors
EIF4G1	1981	genome.wustl.edu	36	3	185522320	185522320	+	Silent	SNP	C	C	T	novel	unknown	TCGA-36-2552-01A-01D-1526-09	TCGA-36-2552-10A-01D-1526-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	e97a1340-6d99-400d-80c5-141096e642ac	3a2fc426-b531-4bb9-b517-b6bdeaa7d38f	3	185522320	185522320	C	T	SNP	EIF4G1	NM_182917	human	genbank	54_36p	+1	reviewed	silent	c.1254	p.V418	0.999	NULL	superfamily_ARM repeat,HMMPfam_MIF4G,HMMSmart_SM00543,HMMPfam_MA3,HMMSmart_SM00544,HMMSmart_SM00515,HMMPfam_W2	-	no_errors
COL3A1	1281	genome.wustl.edu	36	2	189571257	189571257	+	Silent	SNP	T	T	C	novel	unknown	TCGA-36-2552-01A-01D-1526-09	TCGA-36-2552-10A-01D-1526-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	e97a1340-6d99-400d-80c5-141096e642ac	3a2fc426-b531-4bb9-b517-b6bdeaa7d38f	2	189571257	189571257	T	C	SNP	COL3A1	NM_000090	human	genbank	54_36p	+1	reviewed	silent	c.1944	p.G648	1.000	HMMPfam_Collagen	HMMPfam_VWC,HMMSmart_SM00214,PatternScan_VWFC_1,HMMPfam_Collagen,HMMSmart_SM00038,HMMPfam_COLFI	-	no_errors
TRAF5	7188	genome.wustl.edu	36	1	209612412	209612412	+	Silent	SNP	G	G	T	novel	unknown	TCGA-36-2552-01A-01D-1526-09	TCGA-36-2552-10A-01D-1526-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	e97a1340-6d99-400d-80c5-141096e642ac	3a2fc426-b531-4bb9-b517-b6bdeaa7d38f	1	209612412	209612412	G	T	SNP	TRAF5	NM_001033910	human	genbank	54_36p	+1	reviewed	silent	c.1419	p.L473	0.999	superfamily_TRAF domain-like,HMMSmart_SM00061,HMMPfam_MATH	superfamily_RING/U-box,HMMPfam_zf-C3HC4,HMMSmart_SM00184,PatternScan_ZF_RING_1,superfamily_TRAF domain-like,HMMPfam_zf-TRAF,HMMSmart_SM00061,HMMPfam_MATH	-	no_errors
MAP2	4133	genome.wustl.edu	36	2	210226152	210226152	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-36-2552-01A-01D-1526-09	TCGA-36-2552-10A-01D-1526-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	e97a1340-6d99-400d-80c5-141096e642ac	3a2fc426-b531-4bb9-b517-b6bdeaa7d38f	2	210226152	210226152	C	T	SNP	MAP2	NM_002374	human	genbank	54_36p	+1	reviewed	missense	c.13	p.R5W	0.964	NULL	HMMPfam_RII_binding_1,HMMPfam_MAP2_projctn,HMMPfam_Tubulin-binding,PatternScan_TAU_MAP	-	no_errors
LGALS8	3964	genome.wustl.edu	36	1	234774732	234774732	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-36-2552-01A-01D-1526-09	TCGA-36-2552-10A-01D-1526-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	e97a1340-6d99-400d-80c5-141096e642ac	3a2fc426-b531-4bb9-b517-b6bdeaa7d38f	1	234774732	234774732	G	A	SNP	LGALS8	NM_006499	human	genbank	54_36p	+1	reviewed	missense	c.824	p.R275H	1.000	superfamily_ConA_like_lec_gl,HMMSmart_GLECT,HMMPfam_Gal-bind_lectin	superfamily_ConA_like_lec_gl,HMMSmart_GLECT,HMMPfam_Gal-bind_lectin	-	no_errors
SH3BP5L	80851	genome.wustl.edu	36	1	247085658	247085658	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-36-2552-01A-01D-1526-09	TCGA-36-2552-10A-01D-1526-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	e97a1340-6d99-400d-80c5-141096e642ac	3a2fc426-b531-4bb9-b517-b6bdeaa7d38f	1	247085658	247085658	C	T	SNP	SH3BP5L	NM_030645	human	genbank	54_36p	-1	provisional	missense	c.100	p.E34K	0.144	NULL	HMMPfam_SH3BP5	-	no_errors