Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ARFGAP1 55738 hgsc.bcm.edu 36 20 61377916 61377916 + Missense_Mutation SNP C C G novel TCGA-57-1584-01A-01W-0615-10 TCGA-57-1584-11A-01W-0615-10 C C . . . . Unknown Untested Somatic Phase_III WXS none SOLID aa562e49-057d-49e6-865e-5e76ab6dcc5c 93a2a97e-3662-46f6-8396-e6e88da1c272 CHRNA6 8973 hgsc.bcm.edu 36 8 42730211 42730211 + Nonsense_Mutation SNP C C A novel TCGA-57-1584-01A-01W-0615-10 TCGA-57-1584-11A-01W-0615-10 C C . . . . Unknown Untested Somatic Phase_III WXS none SOLID aa562e49-057d-49e6-865e-5e76ab6dcc5c 93a2a97e-3662-46f6-8396-e6e88da1c272 KBTBD4 55709 hgsc.bcm.edu 36 11 47551243 47551243 + Missense_Mutation SNP C C G novel TCGA-57-1584-01A-01W-0615-10 TCGA-57-1584-11A-01W-0615-10 C C . . . . Unknown Untested Somatic Phase_III WXS none SOLID aa562e49-057d-49e6-865e-5e76ab6dcc5c 93a2a97e-3662-46f6-8396-e6e88da1c272 LEMD3 23592 hgsc.bcm.edu 36 12 63850524 63850525 + Frame_Shift_Ins INS - - C novel TCGA-57-1584-01A-01W-0615-10 TCGA-57-1584-11A-01W-0615-10 - - . . . . Unknown Untested Somatic Phase_III WXS none SOLID aa562e49-057d-49e6-865e-5e76ab6dcc5c 93a2a97e-3662-46f6-8396-e6e88da1c272 ACADVL 37 hgsc.bcm.edu 36 17 7068074 7068074 + Missense_Mutation SNP G G A novel TCGA-57-1584-01A-01W-0615-10 TCGA-57-1584-11A-01W-0615-10 G G G A G G Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID aa562e49-057d-49e6-865e-5e76ab6dcc5c 93a2a97e-3662-46f6-8396-e6e88da1c272 AHNAK 79026 hgsc.bcm.edu 36 11 62055013 62055013 + Missense_Mutation SNP G G C novel TCGA-57-1584-01A-01W-0615-10 TCGA-57-1584-11A-01W-0615-10 G G G C G G Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID aa562e49-057d-49e6-865e-5e76ab6dcc5c 93a2a97e-3662-46f6-8396-e6e88da1c272 AKR1B1 231 hgsc.bcm.edu 36 7 133786171 133786171 + Silent SNP C C T novel TCGA-57-1584-01A-01W-0615-10 TCGA-57-1584-11A-01W-0615-10 C C C T C C Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID aa562e49-057d-49e6-865e-5e76ab6dcc5c 93a2a97e-3662-46f6-8396-e6e88da1c272 ARIH2 10425 hgsc.bcm.edu 36 3 48987259 48987259 + Silent SNP C C T novel TCGA-57-1584-01A-01W-0615-10 TCGA-57-1584-11A-01W-0615-10 C C C T C C Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID aa562e49-057d-49e6-865e-5e76ab6dcc5c 93a2a97e-3662-46f6-8396-e6e88da1c272 CFHR2 3080 hgsc.bcm.edu 36 1 195185355 195185355 + Missense_Mutation SNP G G A novel TCGA-57-1584-01A-01W-0615-10 TCGA-57-1584-11A-01W-0615-10 G G G A G G Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID aa562e49-057d-49e6-865e-5e76ab6dcc5c 93a2a97e-3662-46f6-8396-e6e88da1c272 COX4I2 84701 hgsc.bcm.edu 36 20 29690491 29690491 + Silent SNP A A C novel TCGA-57-1584-01A-01W-0615-10 TCGA-57-1584-11A-01W-0615-10 A A A C A A Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID aa562e49-057d-49e6-865e-5e76ab6dcc5c 93a2a97e-3662-46f6-8396-e6e88da1c272 DBF4B 80174 hgsc.bcm.edu 36 17 40174303 40174303 + Missense_Mutation SNP C C G novel TCGA-57-1584-01A-01W-0615-10 TCGA-57-1584-11A-01W-0615-10 C C C G C C Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID aa562e49-057d-49e6-865e-5e76ab6dcc5c 93a2a97e-3662-46f6-8396-e6e88da1c272 GABRQ 55879 hgsc.bcm.edu 36 X 151566256 151566256 + Missense_Mutation SNP C C G novel TCGA-57-1584-01A-01W-0615-10 TCGA-57-1584-11A-01W-0615-10 C C C G C C Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID aa562e49-057d-49e6-865e-5e76ab6dcc5c 93a2a97e-3662-46f6-8396-e6e88da1c272 HIPK3 10114 hgsc.bcm.edu 36 11 33331534 33331534 + Silent SNP C C T novel TCGA-57-1584-01A-01W-0615-10 TCGA-57-1584-11A-01W-0615-10 C C C T C C Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID aa562e49-057d-49e6-865e-5e76ab6dcc5c 93a2a97e-3662-46f6-8396-e6e88da1c272 KLHL20 27252 hgsc.bcm.edu 36 1 172010130 172010130 + Silent SNP G G C novel TCGA-57-1584-01A-01W-0615-10 TCGA-57-1584-11A-01W-0615-10 G G G C G G Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID aa562e49-057d-49e6-865e-5e76ab6dcc5c 93a2a97e-3662-46f6-8396-e6e88da1c272 LAMB4 22798 hgsc.bcm.edu 36 7 107535349 107535349 + Missense_Mutation SNP G G T novel TCGA-57-1584-01A-01W-0615-10 TCGA-57-1584-11A-01W-0615-10 G G G T G G Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID aa562e49-057d-49e6-865e-5e76ab6dcc5c 93a2a97e-3662-46f6-8396-e6e88da1c272 PPWD1 23398 hgsc.bcm.edu 36 5 64908589 64908589 + Missense_Mutation SNP C C G novel TCGA-57-1584-01A-01W-0615-10 TCGA-57-1584-11A-01W-0615-10 C C C G C C Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID aa562e49-057d-49e6-865e-5e76ab6dcc5c 93a2a97e-3662-46f6-8396-e6e88da1c272 TMEM176A 55365 hgsc.bcm.edu 36 7 150131718 150131718 + Missense_Mutation SNP C C A novel TCGA-57-1584-01A-01W-0615-10 TCGA-57-1584-11A-01W-0615-10 C C C A C C Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID aa562e49-057d-49e6-865e-5e76ab6dcc5c 93a2a97e-3662-46f6-8396-e6e88da1c272 TP53 7157 hgsc.bcm.edu 36 17 7519128 7519128 + Missense_Mutation SNP C C T novel TCGA-57-1584-01A-01W-0615-10 TCGA-57-1584-11A-01W-0615-10 C C C T C C Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID aa562e49-057d-49e6-865e-5e76ab6dcc5c 93a2a97e-3662-46f6-8396-e6e88da1c272 WDR78 79819 hgsc.bcm.edu 36 1 67065207 67065207 + Missense_Mutation SNP C C A novel TCGA-57-1584-01A-01W-0615-10 TCGA-57-1584-11A-01W-0615-10 C C C A C C Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID aa562e49-057d-49e6-865e-5e76ab6dcc5c 93a2a97e-3662-46f6-8396-e6e88da1c272 ZNF615 284370 hgsc.bcm.edu 36 19 57188024 57188024 + Missense_Mutation SNP C C T novel TCGA-57-1584-01A-01W-0615-10 TCGA-57-1584-11A-01W-0615-10 C C C T C C Unknown Valid Somatic Phase_III WXS 454_PCR_WGA SOLID aa562e49-057d-49e6-865e-5e76ab6dcc5c 93a2a97e-3662-46f6-8396-e6e88da1c272 AKAP12 9590 hgsc.bcm.edu 36 6 151668733 151668733 + Splice_Site SNP T T G novel TCGA-57-1584-01A-01W-0615-10 TCGA-57-1584-11A-01W-0615-10 T T T G T T Unknown Valid Somatic Phase_III WXS Sanger_PCR_WGA SOLID aa562e49-057d-49e6-865e-5e76ab6dcc5c 93a2a97e-3662-46f6-8396-e6e88da1c272 CAMTA1 23261 hgsc.bcm.edu 36 1 7660282 7660282 + Missense_Mutation SNP T T A novel TCGA-57-1584-01A-01W-0615-10 TCGA-57-1584-11A-01W-0615-10 T T T A T T Unknown Valid Somatic Phase_III WXS Sanger_PCR_WGA SOLID aa562e49-057d-49e6-865e-5e76ab6dcc5c 93a2a97e-3662-46f6-8396-e6e88da1c272 CIZ1 25792 hgsc.bcm.edu 36 9 129980896 129980896 + Missense_Mutation SNP C C T novel TCGA-57-1584-01A-01W-0615-10 TCGA-57-1584-11A-01W-0615-10 C C C T C C Unknown Valid Somatic Phase_III WXS Sanger_PCR_WGA SOLID aa562e49-057d-49e6-865e-5e76ab6dcc5c 93a2a97e-3662-46f6-8396-e6e88da1c272 CRB1 23418 hgsc.bcm.edu 36 1 195677953 195677953 + Missense_Mutation SNP C C G novel TCGA-57-1584-01A-01W-0615-10 TCGA-57-1584-11A-01W-0615-10 C C C G C C Unknown Valid Somatic Phase_III WXS Sanger_PCR_WGA SOLID aa562e49-057d-49e6-865e-5e76ab6dcc5c 93a2a97e-3662-46f6-8396-e6e88da1c272 GGA3 23163 hgsc.bcm.edu 36 17 70748031 70748031 + Nonsense_Mutation SNP C C T novel TCGA-57-1584-01A-01W-0615-10 TCGA-57-1584-11A-01W-0615-10 C C C T C C Unknown Valid Somatic Phase_III WXS Sanger_PCR_WGA SOLID aa562e49-057d-49e6-865e-5e76ab6dcc5c 93a2a97e-3662-46f6-8396-e6e88da1c272 GRIA1 2890 hgsc.bcm.edu 36 5 153170856 153170856 + Missense_Mutation SNP G G T novel TCGA-57-1584-01A-01W-0615-10 TCGA-57-1584-11A-01W-0615-10 G G G T G G Unknown Valid Somatic Phase_III WXS Sanger_PCR_WGA SOLID aa562e49-057d-49e6-865e-5e76ab6dcc5c 93a2a97e-3662-46f6-8396-e6e88da1c272 KCNA6 3742 hgsc.bcm.edu 36 12 4790267 4790267 + Missense_Mutation SNP G G C novel TCGA-57-1584-01A-01W-0615-10 TCGA-57-1584-11A-01W-0615-10 G G G C G G Unknown Valid Somatic Phase_III WXS Sanger_PCR_WGA SOLID aa562e49-057d-49e6-865e-5e76ab6dcc5c 93a2a97e-3662-46f6-8396-e6e88da1c272 LAMA2 3908 hgsc.bcm.edu 36 6 129790663 129790663 + Missense_Mutation SNP A A T novel TCGA-57-1584-01A-01W-0615-10 TCGA-57-1584-11A-01W-0615-10 A A T T A A Unknown Valid Somatic Phase_III WXS Sanger_PCR_WGA SOLID aa562e49-057d-49e6-865e-5e76ab6dcc5c 93a2a97e-3662-46f6-8396-e6e88da1c272 PIK3R1 5295 hgsc.bcm.edu 36 5 67623842 67623842 + Splice_Site SNP G G C novel TCGA-57-1584-01A-01W-0615-10 TCGA-57-1584-11A-01W-0615-10 G G G C G G Unknown Valid Somatic Phase_III WXS Sanger_PCR_WGA SOLID aa562e49-057d-49e6-865e-5e76ab6dcc5c 93a2a97e-3662-46f6-8396-e6e88da1c272 RORB 6096 hgsc.bcm.edu 36 9 76476542 76476542 + Nonsense_Mutation SNP G G T novel TCGA-57-1584-01A-01W-0615-10 TCGA-57-1584-11A-01W-0615-10 G G G T G G Unknown Valid Somatic Phase_III WXS Sanger_PCR_WGA SOLID aa562e49-057d-49e6-865e-5e76ab6dcc5c 93a2a97e-3662-46f6-8396-e6e88da1c272 TRIM23 373 hgsc.bcm.edu 36 5 64940959 64940959 + Missense_Mutation SNP T T C novel TCGA-57-1584-01A-01W-0615-10 TCGA-57-1584-11A-01W-0615-10 T T T C T T Unknown Valid Somatic Phase_III WXS Sanger_PCR_WGA SOLID aa562e49-057d-49e6-865e-5e76ab6dcc5c 93a2a97e-3662-46f6-8396-e6e88da1c272