Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID chromosome_name start stop reference variant type gene_name transcript_name transcript_species transcript_source transcript_version strand transcript_status trv_type c_position amino_acid_change ucsc_cons domain all_domains deletion_substructures transcript_error CPNE9 151835 genome.wustl.edu 36 3 9742736 9742736 + Splice_Site SNP G G A novel unknown TCGA-57-1586-01A-02W-0633-09 TCGA-57-1586-11A-01W-0633-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 28f5e4a4-de41-4c6e-9d8b-a2526743ac79 746ffb07-3eab-4c11-81f5-00cd3717bb53 3 9742736 9742736 G A SNP CPNE9 NM_153635 human genbank 54_36p +1 validated splice_site c.1344+1 e18+1 1.000 - - - no_errors RDH8 50700 genome.wustl.edu 36 19 9990569 9990569 + Missense_Mutation SNP G G T novel unknown TCGA-57-1586-01A-02W-0633-09 TCGA-57-1586-11A-01W-0633-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 28f5e4a4-de41-4c6e-9d8b-a2526743ac79 746ffb07-3eab-4c11-81f5-00cd3717bb53 19 9990569 9990569 G T SNP RDH8 NM_015725 human genbank 54_36p +1 validated missense c.425 p.S142I 1.000 superfamily_NAD(P)-bd,HMMPfam_adh_short,PatternScan_ADH_SHORT superfamily_NAD(P)-bd,HMMPfam_adh_short,PatternScan_ADH_SHORT - no_errors LOC727867 727867 genome.wustl.edu 36 21 13451212 13451212 + RNA SNP G G A novel unknown TCGA-57-1586-01A-02W-0633-09 TCGA-57-1586-11A-01W-0633-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 28f5e4a4-de41-4c6e-9d8b-a2526743ac79 746ffb07-3eab-4c11-81f5-00cd3717bb53 21 13451212 13451212 G A SNP LOC727867 XR_036978 human genbank 54_36p -1 model rna NULL NULL 0.000 - - - pseudogene KIF13A 63971 genome.wustl.edu 36 6 17870780 17870780 + Missense_Mutation SNP C G G novel unknown TCGA-57-1586-01A-02W-0633-09 TCGA-57-1586-11A-01W-0633-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 28f5e4a4-de41-4c6e-9d8b-a2526743ac79 746ffb07-3eab-4c11-81f5-00cd3717bb53 6 17870780 17870780 C G SNP KIF13A ENST00000378814 human ensembl 54_36p -1 known missense c.5231 p.G1744A 0.245 NULL HMMSmart_SM00129,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Kinesin,PatternScan_KINESIN_MOTOR_DOMAIN1,superfamily_SMAD/FHA domain,HMMPfam_FHA - no_stop_codon LOC100131966 0 genome.wustl.edu 36 18 18066485 18066485 + Missense_Mutation SNP C C A novel unknown TCGA-57-1586-01A-02W-0633-09 TCGA-57-1586-11A-01W-0633-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 28f5e4a4-de41-4c6e-9d8b-a2526743ac79 746ffb07-3eab-4c11-81f5-00cd3717bb53 18 18066485 18066485 C A SNP LOC100131966 XM_001714344 human genbank 54_36p +1 model missense c.631 p.P211T 0.000 NULL NULL - no_errors LOC642669 642669 genome.wustl.edu 36 14 18828286 18828286 + Silent SNP A A G novel unknown TCGA-57-1586-01A-02W-0633-09 TCGA-57-1586-11A-01W-0633-09 A A Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 28f5e4a4-de41-4c6e-9d8b-a2526743ac79 746ffb07-3eab-4c11-81f5-00cd3717bb53 14 18828286 18828286 A G SNP LOC642669 XM_926123 human genbank 54_36p +1 model silent c.111 p.P37 0.983 NULL NULL - no_errors OR4L1 122742 genome.wustl.edu 36 14 19598781 19598781 + Silent SNP G G T novel unknown TCGA-57-1586-01A-02W-0633-09 TCGA-57-1586-11A-01W-0633-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 28f5e4a4-de41-4c6e-9d8b-a2526743ac79 746ffb07-3eab-4c11-81f5-00cd3717bb53 14 19598781 19598781 G T SNP OR4L1 NM_001004717 human genbank 54_36p +1 provisional silent c.738 p.V246 0.998 superfamily_SSF81321,HMMPfam_7tm_1 superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1 - no_errors LOC728401 728401 genome.wustl.edu 36 5 21519838 21519838 + Missense_Mutation SNP G G C novel unknown TCGA-57-1586-01A-02W-0633-09 TCGA-57-1586-11A-01W-0633-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 28f5e4a4-de41-4c6e-9d8b-a2526743ac79 746ffb07-3eab-4c11-81f5-00cd3717bb53 5 21519838 21519838 G C SNP LOC728401 XM_001128001 human genbank 54_36p -1 model missense c.40 p.P14A 0.010 NULL NULL - no_errors SLC2A11 66035 genome.wustl.edu 36 22 22554737 22554737 + Splice_Site SNP G G A novel unknown TCGA-57-1586-01A-02W-0633-09 TCGA-57-1586-11A-01W-0633-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 28f5e4a4-de41-4c6e-9d8b-a2526743ac79 746ffb07-3eab-4c11-81f5-00cd3717bb53 22 22554737 22554737 G A SNP SLC2A11 ENST00000398363 human ensembl 54_36p +1 known splice_site c.538-1 e6-1 0.101 - - - no_start_codon LOC100129979 0 genome.wustl.edu 36 15 30564434 30564434 + Silent SNP C T T novel unknown TCGA-57-1586-01A-02W-0633-09 TCGA-57-1586-11A-01W-0633-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 28f5e4a4-de41-4c6e-9d8b-a2526743ac79 746ffb07-3eab-4c11-81f5-00cd3717bb53 15 30564434 30564434 C T SNP LOC100129979 XM_001718810 human genbank 54_36p +1 model silent c.744 p.S248 0.000 NULL NULL - no_errors LARGE 9215 genome.wustl.edu 36 22 32042103 32042103 + Missense_Mutation SNP G G C novel unknown TCGA-57-1586-01A-02W-0633-09 TCGA-57-1586-11A-01W-0633-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 28f5e4a4-de41-4c6e-9d8b-a2526743ac79 746ffb07-3eab-4c11-81f5-00cd3717bb53 22 32042103 32042103 G C SNP LARGE NM_004737 human genbank 54_36p -1 reviewed missense c.1419 p.D473E 0.976 NULL superfamily_Nucleotide-diphospho-sugar transferases,HMMPfam_Glyco_transf_8 - no_errors LARGE 9215 genome.wustl.edu 36 22 32107919 32107919 + Missense_Mutation SNP C C A novel unknown TCGA-57-1586-01A-02W-0633-09 TCGA-57-1586-11A-01W-0633-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 28f5e4a4-de41-4c6e-9d8b-a2526743ac79 746ffb07-3eab-4c11-81f5-00cd3717bb53 22 32107919 32107919 C A SNP LARGE NM_004737 human genbank 54_36p -1 reviewed missense c.1117 p.V373L 1.000 HMMPfam_Glyco_transf_8,superfamily_Nucleotide-diphospho-sugar transferases HMMPfam_Glyco_transf_8,superfamily_Nucleotide-diphospho-sugar transferases - no_errors RPN2 6185 genome.wustl.edu 36 20 35291859 35291859 + Missense_Mutation SNP C C A novel unknown TCGA-57-1586-01A-02W-0633-09 TCGA-57-1586-11A-01W-0633-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 28f5e4a4-de41-4c6e-9d8b-a2526743ac79 746ffb07-3eab-4c11-81f5-00cd3717bb53 20 35291859 35291859 C A SNP RPN2 NM_002951 human genbank 54_36p +1 reviewed missense c.1564 p.P522T 0.996 HMMPfam_Ribophorin_II HMMPfam_Ribophorin_II - no_errors C7orf36 57002 genome.wustl.edu 36 7 39572547 39572547 + Missense_Mutation SNP C G G novel unknown TCGA-57-1586-01A-02W-0633-09 TCGA-57-1586-11A-01W-0633-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 28f5e4a4-de41-4c6e-9d8b-a2526743ac79 746ffb07-3eab-4c11-81f5-00cd3717bb53 7 39572547 39572547 C G SNP C7orf36 NM_020192 human genbank 54_36p +1 predicted missense c.5 p.S2W 1.000 NULL HMMPfam_Yae1_N - no_errors FRMPD2 143162 genome.wustl.edu 36 10 49100394 49100394 + Missense_Mutation SNP A A C novel unknown TCGA-57-1586-01A-02W-0633-09 TCGA-57-1586-11A-01W-0633-09 A A Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 28f5e4a4-de41-4c6e-9d8b-a2526743ac79 746ffb07-3eab-4c11-81f5-00cd3717bb53 10 49100394 49100394 A C SNP FRMPD2 NM_001018071 human genbank 54_36p -1 reviewed missense c.1423 p.L475V 0.959 HMMSmart_SM00295,superfamily_Second domain of FERM,HMMPfam_FERM_M HMMSmart_SM00750,superfamily_Ubiquitin-like,HMMSmart_SM00295,HMMPfam_FERM_N,superfamily_Second domain of FERM,HMMPfam_FERM_M,superfamily_PH domain-like,HMMPfam_FERM_C,superfamily_PDZ domain-like,HMMPfam_PDZ,HMMSmart_SM00228 - no_errors LAMB2 3913 genome.wustl.edu 36 3 49143833 49143833 + Missense_Mutation SNP T T C novel unknown TCGA-57-1586-01A-02W-0633-09 TCGA-57-1586-11A-01W-0633-09 T T Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 28f5e4a4-de41-4c6e-9d8b-a2526743ac79 746ffb07-3eab-4c11-81f5-00cd3717bb53 3 49143833 49143833 T C SNP LAMB2 NM_002292 human genbank 54_36p -1 reviewed missense c.695 p.Y232C 1.000 HMMSmart_LamNT,HMMPfam_Laminin_N HMMSmart_LamNT,HMMPfam_Laminin_N,HMMPfam_Laminin_EGF,HMMSmart_EGF_Lam,superfamily_SSF57196,PatternScan_EGF_1,PatternScan_EGF_LAM_1,PatternScan_EGF_2 - no_errors NUP62 23636 genome.wustl.edu 36 19 55104029 55104029 + Missense_Mutation SNP C G G novel unknown TCGA-57-1586-01A-02W-0633-09 TCGA-57-1586-11A-01W-0633-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 28f5e4a4-de41-4c6e-9d8b-a2526743ac79 746ffb07-3eab-4c11-81f5-00cd3717bb53 19 55104029 55104029 C G SNP NUP62 NM_012346 human genbank 54_36p -1 reviewed missense c.848 p.S283T 0.018 NULL HMMPfam_Nsp1_C - no_errors FCHO2 115548 genome.wustl.edu 36 5 72369487 72369487 + Missense_Mutation SNP G A A novel unknown TCGA-57-1586-01A-02W-0633-09 TCGA-57-1586-11A-01W-0633-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 28f5e4a4-de41-4c6e-9d8b-a2526743ac79 746ffb07-3eab-4c11-81f5-00cd3717bb53 5 72369487 72369487 G A SNP FCHO2 ENST00000287761 human ensembl 54_36p +1 known missense c.1042 p.A348T 0.022 NULL HMMPfam_FCH,HMMSmart_FCH - no_stop_codon LOC440015 0 genome.wustl.edu 36 3 75800777 75800777 + RNA SNP C C T novel unknown TCGA-57-1586-01A-02W-0633-09 TCGA-57-1586-11A-01W-0633-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 28f5e4a4-de41-4c6e-9d8b-a2526743ac79 746ffb07-3eab-4c11-81f5-00cd3717bb53 3 75800777 75800777 C T SNP LOC440015 XR_015234 human genbank 54_36p +1 model rna NULL NULL 0.001 - - - no_errors LOC441644 0 genome.wustl.edu 36 12 93059030 93059030 + Silent SNP C T T novel unknown TCGA-57-1586-01A-02W-0633-09 TCGA-57-1586-11A-01W-0633-09 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 28f5e4a4-de41-4c6e-9d8b-a2526743ac79 746ffb07-3eab-4c11-81f5-00cd3717bb53 12 93059030 93059030 C T SNP LOC441644 XM_001714973 human genbank 54_36p +1 model silent c.774 p.P258 0.987 NULL HMMPfam_ELM2 - no_errors ROBO4 54538 genome.wustl.edu 36 11 124262200 124262200 + Missense_Mutation SNP G G T novel unknown TCGA-57-1586-01A-02W-0633-09 TCGA-57-1586-11A-01W-0633-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 28f5e4a4-de41-4c6e-9d8b-a2526743ac79 746ffb07-3eab-4c11-81f5-00cd3717bb53 11 124262200 124262200 G T SNP ROBO4 NM_019055 human genbank 54_36p -1 validated missense c.2318 p.A773D 0.152 NULL superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408,HMMSmart_SM00060,HMMPfam_fn3,superfamily_Fibronectin type III - no_errors GOLGA1 2800 genome.wustl.edu 36 9 126691334 126691334 + Missense_Mutation SNP G G A novel unknown TCGA-57-1586-01A-02W-0633-09 TCGA-57-1586-11A-01W-0633-09 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 28f5e4a4-de41-4c6e-9d8b-a2526743ac79 746ffb07-3eab-4c11-81f5-00cd3717bb53 9 126691334 126691334 G A SNP GOLGA1 NM_002077 human genbank 54_36p -1 reviewed missense c.1670 p.A557V 0.003 NULL superfamily_Prefoldin,HMMPfam_GRIP,HMMSmart_SM00755 - no_errors COL5A2 1290 genome.wustl.edu 36 2 189609596 189609596 + Silent SNP T T C novel unknown TCGA-57-1586-01A-02W-0633-09 TCGA-57-1586-11A-01W-0633-09 T T Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 28f5e4a4-de41-4c6e-9d8b-a2526743ac79 746ffb07-3eab-4c11-81f5-00cd3717bb53 2 189609596 189609596 T C SNP COL5A2 NM_000393 human genbank 54_36p -1 reviewed silent c.4104 p.R1368 1.000 HMMSmart_COLFI,HMMPfam_COLFI HMMPfam_VWC,HMMSmart_VWC,PatternScan_VWFC_1,HMMPfam_Collagen,HMMSmart_COLFI,HMMPfam_COLFI - no_errors HCG22 285834 genome.wustl.edu 36 6 31131071 31131078 + RNA DEL AAGGAAGG AAGGAAGG - novel unknown TCGA-57-1586-01A-02W-0633-09 TCGA-57-1586-11A-01W-0633-09 AAGGAAGG AAGGAAGG Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 28f5e4a4-de41-4c6e-9d8b-a2526743ac79 746ffb07-3eab-4c11-81f5-00cd3717bb53 6 31131071 31131078 AAGGAAGG - DEL HCG22 NR_003948 human genbank 54_36p +1 provisional rna NULL NULL 0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000 - - (deletion:rna[31129963,31135632]) pseudogene AKD2 0 genome.wustl.edu 36 6 110013023 110013025 + Splice_Site DEL CTT CTT - novel unknown TCGA-57-1586-01A-02W-0633-09 TCGA-57-1586-11A-01W-0633-09 CTT CTT Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 28f5e4a4-de41-4c6e-9d8b-a2526743ac79 746ffb07-3eab-4c11-81f5-00cd3717bb53 6 110013023 110013025 CTT - DEL AKD2 ENST00000341338 human ensembl 54_36p -1 known splice_site_del c.2109+3_2109+1 e19-1 0.003:0.003:0.001 - - (deletion:intron[110007523,110013023], cds_exon[110013024,110013133]) no_errors MIRN620 0 genome.wustl.edu 36 12 115070798 115070801 + RNA DEL TATA TATA - novel unknown TCGA-57-1586-01A-02W-0633-09 TCGA-57-1586-11A-01W-0633-09 TATA TATA Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 28f5e4a4-de41-4c6e-9d8b-a2526743ac79 746ffb07-3eab-4c11-81f5-00cd3717bb53 12 115070798 115070801 TATA - DEL MIRN620 ENST00000385232 human ensembl 54_36p -1 known rna NULL NULL 0.006:0.005:0.001:0.001 - - (deletion:rna[115070748,115070842]) no_errors ENSG00000222183 0 genome.wustl.edu 36 8 118099670 118099673 + RNA DEL ATAA ATAA - novel unknown TCGA-57-1586-01A-02W-0633-09 TCGA-57-1586-11A-01W-0633-09 ATAA ATAA Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 28f5e4a4-de41-4c6e-9d8b-a2526743ac79 746ffb07-3eab-4c11-81f5-00cd3717bb53 8 118099670 118099673 ATAA - DEL ENSG00000222183 ENST00000410251 human ensembl 54_36p +1 novel rna NULL NULL 0.515:0.455:0.256:0.163 - - (deletion:rna[118099366,118099672], flank[118099673,118149672]) no_errors EMX2OS 196047 genome.wustl.edu 36 10 119238447 119238448 + RNA DEL TG TG - novel unknown TCGA-57-1586-01A-02W-0633-09 TCGA-57-1586-11A-01W-0633-09 TG TG Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx 28f5e4a4-de41-4c6e-9d8b-a2526743ac79 746ffb07-3eab-4c11-81f5-00cd3717bb53 10 119238447 119238448 TG - DEL EMX2OS NR_002791 human genbank 54_36p -1 provisional rna NULL NULL 0.002:0.003 - - (deletion:rna[119233794,119240412]) no_errors