Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID SPEN 23013 broad.mit.edu 36 1 16131779 16131779 + Missense_Mutation SNP G G A novel none TCGA-57-1993-01A-01W-0699-08 TCGA-57-1993-11A-01W-0700-08 G G A A G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 2fca611b-92c7-4213-85e7-87d8cbd1f5a5 1f2450f1-fa26-4d9d-8947-7fc7c337ea44 HSPG2 3339 broad.mit.edu 36 1 22077668 22077668 + Silent SNP G G T novel none TCGA-57-1993-01A-01W-0699-08 TCGA-57-1993-11A-01W-0700-08 G G T T G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 2fca611b-92c7-4213-85e7-87d8cbd1f5a5 1f2450f1-fa26-4d9d-8947-7fc7c337ea44 PAFAH2 5051 broad.mit.edu 36 1 26175832 26175832 + Missense_Mutation SNP C C T novel none TCGA-57-1993-01A-01W-0699-08 TCGA-57-1993-11A-01W-0700-08 C C T T C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 2fca611b-92c7-4213-85e7-87d8cbd1f5a5 1f2450f1-fa26-4d9d-8947-7fc7c337ea44 FAM167B 84734 broad.mit.edu 36 1 32485670 32485670 + Missense_Mutation SNP G G T novel none TCGA-57-1993-01A-01W-0699-08 TCGA-57-1993-11A-01W-0700-08 G G T T G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 2fca611b-92c7-4213-85e7-87d8cbd1f5a5 1f2450f1-fa26-4d9d-8947-7fc7c337ea44 LRRC8C 84230 broad.mit.edu 36 1 89952291 89952291 + Missense_Mutation SNP T T G novel none TCGA-57-1993-01A-01W-0699-08 TCGA-57-1993-11A-01W-0700-08 T T G G T T Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 2fca611b-92c7-4213-85e7-87d8cbd1f5a5 1f2450f1-fa26-4d9d-8947-7fc7c337ea44 NPL 80896 broad.mit.edu 36 1 181054357 181054357 + Silent SNP G G A novel none TCGA-57-1993-01A-01W-0699-08 TCGA-57-1993-11A-01W-0700-08 G G A A G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 2fca611b-92c7-4213-85e7-87d8cbd1f5a5 1f2450f1-fa26-4d9d-8947-7fc7c337ea44 NUP133 55746 broad.mit.edu 36 1 227697889 227697889 + Missense_Mutation SNP C C T novel none TCGA-57-1993-01A-01W-0699-08 TCGA-57-1993-11A-01W-0700-08 C C T T C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 2fca611b-92c7-4213-85e7-87d8cbd1f5a5 1f2450f1-fa26-4d9d-8947-7fc7c337ea44 RECQL 5965 broad.mit.edu 36 12 21517783 21517783 + Missense_Mutation SNP G G T novel none TCGA-57-1993-01A-01W-0699-08 TCGA-57-1993-11A-01W-0700-08 G G T T G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 2fca611b-92c7-4213-85e7-87d8cbd1f5a5 1f2450f1-fa26-4d9d-8947-7fc7c337ea44 MYL6 4637 broad.mit.edu 36 12 54839636 54839636 + Splice_Site SNP A A G novel none TCGA-57-1993-01A-01W-0699-08 TCGA-57-1993-11A-01W-0700-08 A A G G A A Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 2fca611b-92c7-4213-85e7-87d8cbd1f5a5 1f2450f1-fa26-4d9d-8947-7fc7c337ea44 WIF1 11197 broad.mit.edu 36 12 63757792 63757792 + Splice_Site SNP C C T novel none TCGA-57-1993-01A-01W-0699-08 TCGA-57-1993-11A-01W-0700-08 C C T T C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 2fca611b-92c7-4213-85e7-87d8cbd1f5a5 1f2450f1-fa26-4d9d-8947-7fc7c337ea44 KIAA0564 23078 broad.mit.edu 36 13 41305524 41305524 + Silent SNP C C T novel none TCGA-57-1993-01A-01W-0699-08 TCGA-57-1993-11A-01W-0700-08 C C T T C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 2fca611b-92c7-4213-85e7-87d8cbd1f5a5 1f2450f1-fa26-4d9d-8947-7fc7c337ea44 SLITRK1 114798 broad.mit.edu 36 13 83352756 83352756 + Missense_Mutation SNP C C A novel none TCGA-57-1993-01A-01W-0699-08 TCGA-57-1993-11A-01W-0700-08 C C A A C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 2fca611b-92c7-4213-85e7-87d8cbd1f5a5 1f2450f1-fa26-4d9d-8947-7fc7c337ea44 NUMB 8650 broad.mit.edu 36 14 72813185 72813185 + Missense_Mutation SNP T T C novel none TCGA-57-1993-01A-01W-0699-08 TCGA-57-1993-11A-01W-0700-08 T T C C T T Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 2fca611b-92c7-4213-85e7-87d8cbd1f5a5 1f2450f1-fa26-4d9d-8947-7fc7c337ea44 C16orf35 8131 broad.mit.edu 36 16 90411 90411 + Silent SNP C C T novel none TCGA-57-1993-01A-01W-0699-08 TCGA-57-1993-11A-01W-0700-08 C C T T C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 2fca611b-92c7-4213-85e7-87d8cbd1f5a5 1f2450f1-fa26-4d9d-8947-7fc7c337ea44 ZNF434 54925 broad.mit.edu 36 16 3380121 3380121 + Missense_Mutation SNP C C T novel none TCGA-57-1993-01A-01W-0699-08 TCGA-57-1993-11A-01W-0700-08 C C T T C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 2fca611b-92c7-4213-85e7-87d8cbd1f5a5 1f2450f1-fa26-4d9d-8947-7fc7c337ea44 ERCC4 2072 broad.mit.edu 36 16 13937037 13937037 + Missense_Mutation SNP G G A novel none TCGA-57-1993-01A-01W-0699-08 TCGA-57-1993-11A-01W-0700-08 G G A A G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 2fca611b-92c7-4213-85e7-87d8cbd1f5a5 1f2450f1-fa26-4d9d-8947-7fc7c337ea44 GGA2 23062 broad.mit.edu 36 16 23388842 23388842 + Silent SNP G G T novel none TCGA-57-1993-01A-01W-0699-08 TCGA-57-1993-11A-01W-0700-08 G G T T G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 2fca611b-92c7-4213-85e7-87d8cbd1f5a5 1f2450f1-fa26-4d9d-8947-7fc7c337ea44 KIAA0664 23277 broad.mit.edu 36 17 2551228 2551228 + Missense_Mutation SNP G G C novel none TCGA-57-1993-01A-01W-0699-08 TCGA-57-1993-11A-01W-0700-08 G G C C G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 2fca611b-92c7-4213-85e7-87d8cbd1f5a5 1f2450f1-fa26-4d9d-8947-7fc7c337ea44 TP53 7157 broad.mit.edu 36 17 7518263 7518263 + Missense_Mutation SNP C C T rs11540652 byHapMap TCGA-57-1993-01A-01W-0699-08 TCGA-57-1993-11A-01W-0700-08 C C T T C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 2fca611b-92c7-4213-85e7-87d8cbd1f5a5 1f2450f1-fa26-4d9d-8947-7fc7c337ea44 MBTD1 54799 broad.mit.edu 36 17 46625164 46625164 + Silent SNP T T C novel none TCGA-57-1993-01A-01W-0699-08 TCGA-57-1993-11A-01W-0700-08 T T C C T T Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 2fca611b-92c7-4213-85e7-87d8cbd1f5a5 1f2450f1-fa26-4d9d-8947-7fc7c337ea44 TXNDC2 84203 broad.mit.edu 36 18 9877220 9877220 + Silent SNP G G A novel none TCGA-57-1993-01A-01W-0699-08 TCGA-57-1993-11A-01W-0700-08 G G A A G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 2fca611b-92c7-4213-85e7-87d8cbd1f5a5 1f2450f1-fa26-4d9d-8947-7fc7c337ea44 CEP192 55125 broad.mit.edu 36 18 13049273 13049273 + Missense_Mutation SNP G G A novel none TCGA-57-1993-01A-01W-0699-08 TCGA-57-1993-11A-01W-0700-08 G G A A G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 2fca611b-92c7-4213-85e7-87d8cbd1f5a5 1f2450f1-fa26-4d9d-8947-7fc7c337ea44 ZNF846 162993 broad.mit.edu 36 19 9729185 9729185 + Missense_Mutation SNP T T C novel none TCGA-57-1993-01A-01W-0699-08 TCGA-57-1993-11A-01W-0700-08 T T C C T T Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 2fca611b-92c7-4213-85e7-87d8cbd1f5a5 1f2450f1-fa26-4d9d-8947-7fc7c337ea44 ZNF14 7561 broad.mit.edu 36 19 19684594 19684594 + Missense_Mutation SNP C C T novel none TCGA-57-1993-01A-01W-0699-08 TCGA-57-1993-11A-01W-0700-08 C C T T C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 2fca611b-92c7-4213-85e7-87d8cbd1f5a5 1f2450f1-fa26-4d9d-8947-7fc7c337ea44 KCNN4 3783 broad.mit.edu 36 19 48976695 48976695 + Silent SNP C C T novel none TCGA-57-1993-01A-01W-0699-08 TCGA-57-1993-11A-01W-0700-08 C C T T C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 2fca611b-92c7-4213-85e7-87d8cbd1f5a5 1f2450f1-fa26-4d9d-8947-7fc7c337ea44 ZC3H4 23211 broad.mit.edu 36 19 52262365 52262365 + Silent SNP C C T novel none TCGA-57-1993-01A-01W-0699-08 TCGA-57-1993-11A-01W-0700-08 C C T T C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 2fca611b-92c7-4213-85e7-87d8cbd1f5a5 1f2450f1-fa26-4d9d-8947-7fc7c337ea44 NLRP11 204801 broad.mit.edu 36 19 60999429 60999429 + Splice_Site SNP C C A novel none TCGA-57-1993-01A-01W-0699-08 TCGA-57-1993-11A-01W-0700-08 C C A A C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 2fca611b-92c7-4213-85e7-87d8cbd1f5a5 1f2450f1-fa26-4d9d-8947-7fc7c337ea44 PTPN4 5775 broad.mit.edu 36 2 120439567 120439567 + Missense_Mutation SNP C C G novel none TCGA-57-1993-01A-01W-0699-08 TCGA-57-1993-11A-01W-0700-08 C C G G C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 2fca611b-92c7-4213-85e7-87d8cbd1f5a5 1f2450f1-fa26-4d9d-8947-7fc7c337ea44 AGPS 8540 broad.mit.edu 36 2 178010001 178010001 + Silent SNP C C A novel none TCGA-57-1993-01A-01W-0699-08 TCGA-57-1993-11A-01W-0700-08 C C A A C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 2fca611b-92c7-4213-85e7-87d8cbd1f5a5 1f2450f1-fa26-4d9d-8947-7fc7c337ea44 CST7 8530 broad.mit.edu 36 20 24885932 24885932 + Missense_Mutation SNP C C A novel none TCGA-57-1993-01A-01W-0699-08 TCGA-57-1993-11A-01W-0700-08 C C A A C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 2fca611b-92c7-4213-85e7-87d8cbd1f5a5 1f2450f1-fa26-4d9d-8947-7fc7c337ea44 ASXL1 171023 broad.mit.edu 36 20 30420578 30420578 + Silent SNP C C T novel none TCGA-57-1993-01A-01W-0699-08 TCGA-57-1993-11A-01W-0700-08 C C T T C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 2fca611b-92c7-4213-85e7-87d8cbd1f5a5 1f2450f1-fa26-4d9d-8947-7fc7c337ea44 SS18L1 26039 broad.mit.edu 36 20 60183019 60183019 + Missense_Mutation SNP G G A novel none TCGA-57-1993-01A-01W-0699-08 TCGA-57-1993-11A-01W-0700-08 G G A A G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 2fca611b-92c7-4213-85e7-87d8cbd1f5a5 1f2450f1-fa26-4d9d-8947-7fc7c337ea44 RNF160 26046 broad.mit.edu 36 21 29246387 29246387 + Missense_Mutation SNP C C T novel none TCGA-57-1993-01A-01W-0699-08 TCGA-57-1993-11A-01W-0700-08 C C T T C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 2fca611b-92c7-4213-85e7-87d8cbd1f5a5 1f2450f1-fa26-4d9d-8947-7fc7c337ea44 NCAPH2 29781 broad.mit.edu 36 22 49307644 49307644 + Nonsense_Mutation SNP G G T novel none TCGA-57-1993-01A-01W-0699-08 TCGA-57-1993-11A-01W-0700-08 G G T T G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 2fca611b-92c7-4213-85e7-87d8cbd1f5a5 1f2450f1-fa26-4d9d-8947-7fc7c337ea44 ZMAT3 64393 broad.mit.edu 36 3 180268015 180268015 + Missense_Mutation SNP G G C novel none TCGA-57-1993-01A-01W-0699-08 TCGA-57-1993-11A-01W-0700-08 G G C C G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 2fca611b-92c7-4213-85e7-87d8cbd1f5a5 1f2450f1-fa26-4d9d-8947-7fc7c337ea44 NPFFR2 10886 broad.mit.edu 36 4 73213311 73213311 + Missense_Mutation SNP A A G novel none TCGA-57-1993-01A-01W-0699-08 TCGA-57-1993-11A-01W-0700-08 A A G G A A Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 2fca611b-92c7-4213-85e7-87d8cbd1f5a5 1f2450f1-fa26-4d9d-8947-7fc7c337ea44 CDH10 1008 broad.mit.edu 36 5 24523914 24523914 + Missense_Mutation SNP C C T novel none TCGA-57-1993-01A-01W-0699-08 TCGA-57-1993-11A-01W-0700-08 C C T T C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 2fca611b-92c7-4213-85e7-87d8cbd1f5a5 1f2450f1-fa26-4d9d-8947-7fc7c337ea44 ACTBL2 345651 broad.mit.edu 36 5 56813689 56813689 + Missense_Mutation SNP G G T novel none TCGA-57-1993-01A-01W-0699-08 TCGA-57-1993-11A-01W-0700-08 G G T T G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 2fca611b-92c7-4213-85e7-87d8cbd1f5a5 1f2450f1-fa26-4d9d-8947-7fc7c337ea44 ACTBL2 345651 broad.mit.edu 36 5 56813808 56813808 + Missense_Mutation SNP G G T novel none TCGA-57-1993-01A-01W-0699-08 TCGA-57-1993-11A-01W-0700-08 G G T T G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 2fca611b-92c7-4213-85e7-87d8cbd1f5a5 1f2450f1-fa26-4d9d-8947-7fc7c337ea44 CLVS2 134829 broad.mit.edu 36 6 123360735 123360735 + Silent SNP C C T novel none TCGA-57-1993-01A-01W-0699-08 TCGA-57-1993-11A-01W-0700-08 C C T T C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 2fca611b-92c7-4213-85e7-87d8cbd1f5a5 1f2450f1-fa26-4d9d-8947-7fc7c337ea44 HIVEP2 3097 broad.mit.edu 36 6 143137420 143137420 + Missense_Mutation SNP A A G novel none TCGA-57-1993-01A-01W-0699-08 TCGA-57-1993-11A-01W-0700-08 A A G G A A Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 2fca611b-92c7-4213-85e7-87d8cbd1f5a5 1f2450f1-fa26-4d9d-8947-7fc7c337ea44 LAMB4 22798 broad.mit.edu 36 7 107539614 107539614 + Missense_Mutation SNP C C T novel none TCGA-57-1993-01A-01W-0699-08 TCGA-57-1993-11A-01W-0700-08 C C T T C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 2fca611b-92c7-4213-85e7-87d8cbd1f5a5 1f2450f1-fa26-4d9d-8947-7fc7c337ea44 IQUB 154865 broad.mit.edu 36 7 122888709 122888709 + Nonsense_Mutation SNP G G A novel none TCGA-57-1993-01A-01W-0699-08 TCGA-57-1993-11A-01W-0700-08 G G A A G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 2fca611b-92c7-4213-85e7-87d8cbd1f5a5 1f2450f1-fa26-4d9d-8947-7fc7c337ea44 C9orf11 54586 broad.mit.edu 36 9 27276331 27276331 + Missense_Mutation SNP T T A novel none TCGA-57-1993-01A-01W-0699-08 TCGA-57-1993-11A-01W-0700-08 T T A A T T Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 2fca611b-92c7-4213-85e7-87d8cbd1f5a5 1f2450f1-fa26-4d9d-8947-7fc7c337ea44 PGK1 5230 broad.mit.edu 36 X 77255900 77255900 + Missense_Mutation SNP T T G novel none TCGA-57-1993-01A-01W-0699-08 TCGA-57-1993-11A-01W-0700-08 T T G G T T Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx 2fca611b-92c7-4213-85e7-87d8cbd1f5a5 1f2450f1-fa26-4d9d-8947-7fc7c337ea44