Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID TMCO2 127391 broad.mit.edu 36 1 40489833 40489833 + Missense_Mutation SNP G G C novel none TCGA-59-2354-01A-01W-0799-08 TCGA-59-2354-11A-01W-0800-08 G G C C G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx cd72c0cb-1455-4d99-bb29-a770880c194f 4cd40c80-2565-4365-8f0f-47a4145f75cf OSBPL9 114883 broad.mit.edu 36 1 51952316 51952316 + Missense_Mutation SNP C C A novel none TCGA-59-2354-01A-01W-0799-08 TCGA-59-2354-11A-01W-0800-08 C C A A C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx cd72c0cb-1455-4d99-bb29-a770880c194f 4cd40c80-2565-4365-8f0f-47a4145f75cf EPS8L3 79574 broad.mit.edu 36 1 110103833 110103833 + Missense_Mutation SNP A A G novel none TCGA-59-2354-01A-01W-0799-08 TCGA-59-2354-11A-01W-0800-08 A A G G A A Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx cd72c0cb-1455-4d99-bb29-a770880c194f 4cd40c80-2565-4365-8f0f-47a4145f75cf SLC26A9 115019 broad.mit.edu 36 1 204171506 204171506 + Missense_Mutation SNP A A T novel none TCGA-59-2354-01A-01W-0799-08 TCGA-59-2354-11A-01W-0800-08 A A T T A A Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx cd72c0cb-1455-4d99-bb29-a770880c194f 4cd40c80-2565-4365-8f0f-47a4145f75cf HLX 3142 broad.mit.edu 36 1 219119876 219119876 + Silent SNP G G T novel none TCGA-59-2354-01A-01W-0799-08 TCGA-59-2354-11A-01W-0800-08 G G T T G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx cd72c0cb-1455-4d99-bb29-a770880c194f 4cd40c80-2565-4365-8f0f-47a4145f75cf LRRC18 474354 broad.mit.edu 36 10 49792137 49792137 + Missense_Mutation SNP T T A novel none TCGA-59-2354-01A-01W-0799-08 TCGA-59-2354-11A-01W-0800-08 T T A A T T Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx cd72c0cb-1455-4d99-bb29-a770880c194f 4cd40c80-2565-4365-8f0f-47a4145f75cf OR5J2 282775 broad.mit.edu 36 11 55701170 55701170 + Silent SNP C C G novel none TCGA-59-2354-01A-01W-0799-08 TCGA-59-2354-11A-01W-0800-08 C C G G C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx cd72c0cb-1455-4d99-bb29-a770880c194f 4cd40c80-2565-4365-8f0f-47a4145f75cf STIP1 10963 broad.mit.edu 36 11 63718643 63718643 + Nonsense_Mutation SNP C C T novel none TCGA-59-2354-01A-01W-0799-08 TCGA-59-2354-11A-01W-0800-08 C C T T C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx cd72c0cb-1455-4d99-bb29-a770880c194f 4cd40c80-2565-4365-8f0f-47a4145f75cf SLC36A4 120103 broad.mit.edu 36 11 92540844 92540844 + Missense_Mutation SNP C C G novel none TCGA-59-2354-01A-01W-0799-08 TCGA-59-2354-11A-01W-0800-08 C C G G C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx cd72c0cb-1455-4d99-bb29-a770880c194f 4cd40c80-2565-4365-8f0f-47a4145f75cf CD163L1 283316 broad.mit.edu 36 12 7413464 7413464 + Silent SNP G G A novel none TCGA-59-2354-01A-01W-0799-08 TCGA-59-2354-11A-01W-0800-08 G G A A G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx cd72c0cb-1455-4d99-bb29-a770880c194f 4cd40c80-2565-4365-8f0f-47a4145f75cf CNTN1 1272 broad.mit.edu 36 12 39694366 39694366 + Missense_Mutation SNP C C T novel none TCGA-59-2354-01A-01W-0799-08 TCGA-59-2354-11A-01W-0800-08 C C T T C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx cd72c0cb-1455-4d99-bb29-a770880c194f 4cd40c80-2565-4365-8f0f-47a4145f75cf VDR 7421 broad.mit.edu 36 12 46537578 46537578 + Silent SNP G G C novel none TCGA-59-2354-01A-01W-0799-08 TCGA-59-2354-11A-01W-0800-08 G G C C G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx cd72c0cb-1455-4d99-bb29-a770880c194f 4cd40c80-2565-4365-8f0f-47a4145f75cf PAH 5053 broad.mit.edu 36 12 101770838 101770838 + Nonsense_Mutation SNP G G A rs5030846 unknown TCGA-59-2354-01A-01W-0799-08 TCGA-59-2354-11A-01W-0800-08 G G A A G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx cd72c0cb-1455-4d99-bb29-a770880c194f 4cd40c80-2565-4365-8f0f-47a4145f75cf CRY1 1407 broad.mit.edu 36 12 105917967 105917967 + Silent SNP T T C novel none TCGA-59-2354-01A-01W-0799-08 TCGA-59-2354-11A-01W-0800-08 T T C C T T Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx cd72c0cb-1455-4d99-bb29-a770880c194f 4cd40c80-2565-4365-8f0f-47a4145f75cf OR4K15 81127 broad.mit.edu 36 14 19513894 19513894 + Missense_Mutation SNP T T A novel none TCGA-59-2354-01A-01W-0799-08 TCGA-59-2354-11A-01W-0800-08 T T A A T T Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx cd72c0cb-1455-4d99-bb29-a770880c194f 4cd40c80-2565-4365-8f0f-47a4145f75cf PROX2 283571 broad.mit.edu 36 14 74399290 74399290 + Nonsense_Mutation SNP A A T novel none TCGA-59-2354-01A-01W-0799-08 TCGA-59-2354-11A-01W-0800-08 A A T T A A Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx cd72c0cb-1455-4d99-bb29-a770880c194f 4cd40c80-2565-4365-8f0f-47a4145f75cf TTBK2 146057 broad.mit.edu 36 15 40831560 40831560 + Nonsense_Mutation SNP C C T novel none TCGA-59-2354-01A-01W-0799-08 TCGA-59-2354-11A-01W-0800-08 C C T T C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx cd72c0cb-1455-4d99-bb29-a770880c194f 4cd40c80-2565-4365-8f0f-47a4145f75cf NTRK3 4916 broad.mit.edu 36 15 86277384 86277384 + Missense_Mutation SNP A A T novel none TCGA-59-2354-01A-01W-0799-08 TCGA-59-2354-11A-01W-0800-08 A A T T A A Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx cd72c0cb-1455-4d99-bb29-a770880c194f 4cd40c80-2565-4365-8f0f-47a4145f75cf OR2C1 4993 broad.mit.edu 36 16 3346250 3346250 + Silent SNP C C T novel none TCGA-59-2354-01A-01W-0799-08 TCGA-59-2354-11A-01W-0800-08 C C T T C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx cd72c0cb-1455-4d99-bb29-a770880c194f 4cd40c80-2565-4365-8f0f-47a4145f75cf JPH3 57338 broad.mit.edu 36 16 86235798 86235798 + Missense_Mutation SNP G G T novel none TCGA-59-2354-01A-01W-0799-08 TCGA-59-2354-11A-01W-0800-08 G G T T G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx cd72c0cb-1455-4d99-bb29-a770880c194f 4cd40c80-2565-4365-8f0f-47a4145f75cf STAT3 6774 broad.mit.edu 36 17 37752228 37752228 + Missense_Mutation SNP G G C novel none TCGA-59-2354-01A-01W-0799-08 TCGA-59-2354-11A-01W-0800-08 G G C C G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx cd72c0cb-1455-4d99-bb29-a770880c194f 4cd40c80-2565-4365-8f0f-47a4145f75cf FZD2 2535 broad.mit.edu 36 17 39991386 39991386 + Silent SNP A A G novel none TCGA-59-2354-01A-01W-0799-08 TCGA-59-2354-11A-01W-0800-08 A A G G A A Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx cd72c0cb-1455-4d99-bb29-a770880c194f 4cd40c80-2565-4365-8f0f-47a4145f75cf MGAT5B 146664 broad.mit.edu 36 17 72389851 72389851 + Missense_Mutation SNP G G A novel none TCGA-59-2354-01A-01W-0799-08 TCGA-59-2354-11A-01W-0800-08 G G A A G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx cd72c0cb-1455-4d99-bb29-a770880c194f 4cd40c80-2565-4365-8f0f-47a4145f75cf SUPT5H 6829 broad.mit.edu 36 19 44635845 44635845 + Nonsense_Mutation SNP G G T novel none TCGA-59-2354-01A-01W-0799-08 TCGA-59-2354-11A-01W-0800-08 G G T T G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx cd72c0cb-1455-4d99-bb29-a770880c194f 4cd40c80-2565-4365-8f0f-47a4145f75cf CEACAM1 634 broad.mit.edu 36 19 47717295 47717295 + Missense_Mutation SNP A A C novel none TCGA-59-2354-01A-01W-0799-08 TCGA-59-2354-11A-01W-0800-08 A A C C A A Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx cd72c0cb-1455-4d99-bb29-a770880c194f 4cd40c80-2565-4365-8f0f-47a4145f75cf SYMPK 8189 broad.mit.edu 36 19 51030228 51030228 + Silent SNP C C T novel none TCGA-59-2354-01A-01W-0799-08 TCGA-59-2354-11A-01W-0800-08 C C T T C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx cd72c0cb-1455-4d99-bb29-a770880c194f 4cd40c80-2565-4365-8f0f-47a4145f75cf ZNF415 55786 broad.mit.edu 36 19 58311415 58311415 + Missense_Mutation SNP A A C novel none TCGA-59-2354-01A-01W-0799-08 TCGA-59-2354-11A-01W-0800-08 A A C C A A Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx cd72c0cb-1455-4d99-bb29-a770880c194f 4cd40c80-2565-4365-8f0f-47a4145f75cf PRKCE 5581 broad.mit.edu 36 2 46082066 46082066 + Silent SNP C C T novel none TCGA-59-2354-01A-01W-0799-08 TCGA-59-2354-11A-01W-0800-08 C C T T C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx cd72c0cb-1455-4d99-bb29-a770880c194f 4cd40c80-2565-4365-8f0f-47a4145f75cf VWA3B 200403 broad.mit.edu 36 2 98286608 98286608 + Silent SNP T T A novel none TCGA-59-2354-01A-01W-0799-08 TCGA-59-2354-11A-01W-0800-08 T T A A T T Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx cd72c0cb-1455-4d99-bb29-a770880c194f 4cd40c80-2565-4365-8f0f-47a4145f75cf TTN 7273 broad.mit.edu 36 2 179107331 179107331 + Missense_Mutation SNP C C G novel none TCGA-59-2354-01A-01W-0799-08 TCGA-59-2354-11A-01W-0800-08 C C G G C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx cd72c0cb-1455-4d99-bb29-a770880c194f 4cd40c80-2565-4365-8f0f-47a4145f75cf ACAD11 84129 broad.mit.edu 36 3 133846346 133846346 + Silent SNP A A G novel none TCGA-59-2354-01A-01W-0799-08 TCGA-59-2354-11A-01W-0800-08 A A G G A A Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx cd72c0cb-1455-4d99-bb29-a770880c194f 4cd40c80-2565-4365-8f0f-47a4145f75cf KY 339855 broad.mit.edu 36 3 135822366 135822366 + Silent SNP G G A novel none TCGA-59-2354-01A-01W-0799-08 TCGA-59-2354-11A-01W-0800-08 G G A A G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx cd72c0cb-1455-4d99-bb29-a770880c194f 4cd40c80-2565-4365-8f0f-47a4145f75cf KCNAB1 7881 broad.mit.edu 36 3 157714893 157714893 + Missense_Mutation SNP G G A novel none TCGA-59-2354-01A-01W-0799-08 TCGA-59-2354-11A-01W-0800-08 G G A A G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx cd72c0cb-1455-4d99-bb29-a770880c194f 4cd40c80-2565-4365-8f0f-47a4145f75cf ANKRD17 26057 broad.mit.edu 36 4 74238557 74238557 + Missense_Mutation SNP C C T novel none TCGA-59-2354-01A-01W-0799-08 TCGA-59-2354-11A-01W-0800-08 C C T T C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx cd72c0cb-1455-4d99-bb29-a770880c194f 4cd40c80-2565-4365-8f0f-47a4145f75cf GALNTL6 442117 broad.mit.edu 36 4 173967244 173967244 + Silent SNP C C A novel none TCGA-59-2354-01A-01W-0799-08 TCGA-59-2354-11A-01W-0800-08 C C A A C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx cd72c0cb-1455-4d99-bb29-a770880c194f 4cd40c80-2565-4365-8f0f-47a4145f75cf BTN3A1 11119 broad.mit.edu 36 6 26514145 26514145 + Missense_Mutation SNP C C T novel none TCGA-59-2354-01A-01W-0799-08 TCGA-59-2354-11A-01W-0800-08 C C T T C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx cd72c0cb-1455-4d99-bb29-a770880c194f 4cd40c80-2565-4365-8f0f-47a4145f75cf BAT2 7916 broad.mit.edu 36 6 31703919 31703919 + Silent SNP G G T novel none TCGA-59-2354-01A-01W-0799-08 TCGA-59-2354-11A-01W-0800-08 G G T T G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx cd72c0cb-1455-4d99-bb29-a770880c194f 4cd40c80-2565-4365-8f0f-47a4145f75cf SYNGAP1 8831 broad.mit.edu 36 6 33507998 33507998 + Silent SNP C C T novel none TCGA-59-2354-01A-01W-0799-08 TCGA-59-2354-11A-01W-0800-08 C C T T C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx cd72c0cb-1455-4d99-bb29-a770880c194f 4cd40c80-2565-4365-8f0f-47a4145f75cf PKHD1 5314 broad.mit.edu 36 6 51809160 51809160 + Splice_Site SNP C C A novel none TCGA-59-2354-01A-01W-0799-08 TCGA-59-2354-11A-01W-0800-08 C C A A C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx cd72c0cb-1455-4d99-bb29-a770880c194f 4cd40c80-2565-4365-8f0f-47a4145f75cf BEND3 57673 broad.mit.edu 36 6 107526493 107526493 + Silent SNP C C G novel none TCGA-59-2354-01A-01W-0799-08 TCGA-59-2354-11A-01W-0800-08 C C G G C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx cd72c0cb-1455-4d99-bb29-a770880c194f 4cd40c80-2565-4365-8f0f-47a4145f75cf FAM180A 389558 broad.mit.edu 36 7 135069408 135069408 + Missense_Mutation SNP G G C novel none TCGA-59-2354-01A-01W-0799-08 TCGA-59-2354-11A-01W-0800-08 G G C C G G Unknown Valid Somatic Phase_I Capture Sequenom;Capture Illumina GAIIx cd72c0cb-1455-4d99-bb29-a770880c194f 4cd40c80-2565-4365-8f0f-47a4145f75cf TNKS 8658 broad.mit.edu 36 8 9647523 9647523 + Missense_Mutation SNP C C T novel none TCGA-59-2354-01A-01W-0799-08 TCGA-59-2354-11A-01W-0800-08 C C T T C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx cd72c0cb-1455-4d99-bb29-a770880c194f 4cd40c80-2565-4365-8f0f-47a4145f75cf LGI3 203190 broad.mit.edu 36 8 22061981 22061981 + Missense_Mutation SNP G G T novel none TCGA-59-2354-01A-01W-0799-08 TCGA-59-2354-11A-01W-0800-08 G G T T G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx cd72c0cb-1455-4d99-bb29-a770880c194f 4cd40c80-2565-4365-8f0f-47a4145f75cf ANK1 286 broad.mit.edu 36 8 41699886 41699886 + Missense_Mutation SNP G G T novel none TCGA-59-2354-01A-01W-0799-08 TCGA-59-2354-11A-01W-0800-08 G G T T G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx cd72c0cb-1455-4d99-bb29-a770880c194f 4cd40c80-2565-4365-8f0f-47a4145f75cf CHD7 55636 broad.mit.edu 36 8 61940738 61940738 + Missense_Mutation SNP T T C novel none TCGA-59-2354-01A-01W-0799-08 TCGA-59-2354-11A-01W-0800-08 T T C C T T Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx cd72c0cb-1455-4d99-bb29-a770880c194f 4cd40c80-2565-4365-8f0f-47a4145f75cf SLCO5A1 81796 broad.mit.edu 36 8 70747889 70747889 + Missense_Mutation SNP C C G novel none TCGA-59-2354-01A-01W-0799-08 TCGA-59-2354-11A-01W-0800-08 C C G G C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx cd72c0cb-1455-4d99-bb29-a770880c194f 4cd40c80-2565-4365-8f0f-47a4145f75cf ADAMTSL1 92949 broad.mit.edu 36 9 18896802 18896802 + Missense_Mutation SNP G G T novel none TCGA-59-2354-01A-01W-0799-08 TCGA-59-2354-11A-01W-0800-08 G G T T G G Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx cd72c0cb-1455-4d99-bb29-a770880c194f 4cd40c80-2565-4365-8f0f-47a4145f75cf HAUS6 54801 broad.mit.edu 36 9 19053008 19053008 + Missense_Mutation SNP C C T novel none TCGA-59-2354-01A-01W-0799-08 TCGA-59-2354-11A-01W-0800-08 C C T T C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx cd72c0cb-1455-4d99-bb29-a770880c194f 4cd40c80-2565-4365-8f0f-47a4145f75cf NOL6 65083 broad.mit.edu 36 9 33456615 33456615 + Silent SNP C C T novel none TCGA-59-2354-01A-01W-0799-08 TCGA-59-2354-11A-01W-0800-08 C C T T C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx cd72c0cb-1455-4d99-bb29-a770880c194f 4cd40c80-2565-4365-8f0f-47a4145f75cf CCIN 881 broad.mit.edu 36 9 36160503 36160503 + Missense_Mutation SNP C C A novel none TCGA-59-2354-01A-01W-0799-08 TCGA-59-2354-11A-01W-0800-08 C C A A C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx cd72c0cb-1455-4d99-bb29-a770880c194f 4cd40c80-2565-4365-8f0f-47a4145f75cf HIATL1 84641 broad.mit.edu 36 9 96247096 96247096 + Silent SNP C C T novel none TCGA-59-2354-01A-01W-0799-08 TCGA-59-2354-11A-01W-0800-08 C C T T C C Unknown Valid Somatic Phase_I Capture Capture Illumina GAIIx cd72c0cb-1455-4d99-bb29-a770880c194f 4cd40c80-2565-4365-8f0f-47a4145f75cf