Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_alt_allele	validation_method	validation_status	validation_tumor_sample	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
HRAS	3265	broad.mit.edu	37	11	534286	534286	+	Missense_Mutation	SNP	C	C	G	rs104894228		TCGA-PR-A5PG-01A-11D-A35D-08	TCGA-PR-A5PG-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ffef4988-378c-4c7c-a1d3-9dc6183c15e8	3f14e246-12e1-4c08-83bb-22ad230db737	g.chr11:534286C>G	ENST00000417302.1	-	2	224	c.37G>C	c.(37-39)Ggt>Cgt	p.G13R	HRAS_ENST00000397594.1_Missense_Mutation_p.G13R|HRAS_ENST00000468682.2_5'UTR|HRAS_ENST00000451590.1_Missense_Mutation_p.G13R|HRAS_ENST00000397596.2_Missense_Mutation_p.G13R|HRAS_ENST00000311189.7_Missense_Mutation_p.G13R	NM_176795.3	NP_789765.1	P01112	RASH_HUMAN	Harvey rat sarcoma viral oncogene homolog	13			G -> C (in FCSS).|G -> D (in FCSS).		activation of MAPKK activity|axon guidance|blood coagulation|cell cycle arrest|cellular senescence|epidermal growth factor receptor signaling pathway|insulin receptor signaling pathway|leukocyte migration|mitotic cell cycle G1/S transition checkpoint|negative regulation of cell proliferation|nerve growth factor receptor signaling pathway|organ morphogenesis|positive regulation of DNA replication|positive regulation of epithelial cell proliferation|Ras protein signal transduction|synaptic transmission	cytosol|Golgi membrane|plasma membrane	GTP binding|GTPase activity|protein C-terminus binding	p.G13R(70)|p.G13S(9)|p.G13C(8)|p.G12_G13insAG(1)		adrenal_gland(1)|bone(3)|breast(7)|cervix(23)|endometrium(4)|haematopoietic_and_lymphoid_tissue(12)|kidney(1)|large_intestine(2)|liver(1)|lung(16)|oesophagus(2)|penis(2)|pituitary(10)|prostate(31)|salivary_gland(24)|skin(184)|soft_tissue(38)|stomach(14)|testis(5)|thymus(1)|thyroid(173)|upper_aerodigestive_tract(122)|urinary_tract(225)	901		all_cancers(49;4.37e-09)|all_epithelial(84;2.09e-06)|Breast(177;0.000162)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.0538)|all_lung(207;0.0713)		all cancers(45;7.63e-28)|Epithelial(43;7.29e-27)|OV - Ovarian serous cystadenocarcinoma(40;7.15e-21)|BRCA - Breast invasive adenocarcinoma(625;3.56e-05)|Lung(200;0.0375)|LUSC - Lung squamous cell carcinoma(625;0.0703)	Sulindac(DB00605)	TTGCCCACACCGCCGGCGCCC	0.642000		6	Mis		"""infrequent sarcomas, rare other types"""	"""rhadomyosarcoma, ganglioneuroblastoma, bladder"""			Costello syndrome	HNSCC(11;0.0054)			31	21					0	0	1	0	0
TTC12	54970	broad.mit.edu	37	11	113212566	113212566	+	Missense_Mutation	SNP	T	T	C			TCGA-PR-A5PG-01A-11D-A35D-08	TCGA-PR-A5PG-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ffef4988-378c-4c7c-a1d3-9dc6183c15e8	3f14e246-12e1-4c08-83bb-22ad230db737	g.chr11:113212566T>C	ENST00000393020.1	+	12	1309	c.904T>C	c.(904-906)Tcc>Ccc	p.S302P	TTC12_ENST00000478125.1_3'UTR|TTC12_ENST00000314756.3_Missense_Mutation_p.S302P|TTC12_ENST00000529221.1_Missense_Mutation_p.S302P|TTC12_ENST00000483239.2_Missense_Mutation_p.S308P			Q9H892	TTC12_HUMAN	tetratricopeptide repeat domain 12	302							binding			breast(1)|central_nervous_system(1)|cervix(1)|endometrium(2)|kidney(1)|large_intestine(6)|lung(12)|pancreas(2)|skin(3)|stomach(1)|upper_aerodigestive_tract(1)|urinary_tract(1)	32		all_cancers(61;2.73e-16)|all_epithelial(67;8.64e-10)|Melanoma(852;1.46e-05)|all_hematologic(158;0.00014)|Acute lymphoblastic leukemia(157;0.000967)|Breast(348;0.0101)|all_neural(223;0.0281)|Medulloblastoma(222;0.0425)|Prostate(24;0.183)|Renal(330;0.187)		BRCA - Breast invasive adenocarcinoma(274;5.3e-06)|Epithelial(105;8.37e-05)|all cancers(92;0.000694)		TAGGTGTTTTTCCACAGCAGG	0.423000													32	58					0	0	1	0	0
SLC2A10	81031	broad.mit.edu	37	20	45354641	45354641	+	Silent	SNP	C	C	A			TCGA-PR-A5PG-01A-11D-A35D-08	TCGA-PR-A5PG-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ffef4988-378c-4c7c-a1d3-9dc6183c15e8	3f14e246-12e1-4c08-83bb-22ad230db737	g.chr20:45354641C>A	ENST00000359271.2	+	2	1216	c.966C>A	c.(964-966)ccC>ccA	p.P322P		NM_030777.3	NP_110404.1	O95528	GTR10_HUMAN	solute carrier family 2 (facilitated glucose transporter), member 10	322						endomembrane system|integral to membrane|perinuclear region of cytoplasm|plasma membrane	D-glucose transmembrane transporter activity|sugar:hydrogen symporter activity			central_nervous_system(2)|cervix(1)|endometrium(1)|kidney(1)|large_intestine(9)|liver(2)|lung(13)|ovary(1)|skin(3)|upper_aerodigestive_tract(1)	34		Myeloproliferative disorder(115;0.0122)				TTGCCGTGCCCATGGACTCAG	0.657000													20	22					1.56452e-12	1.63903e-12	1	1	0
AGAP6	414189	broad.mit.edu	37	10	51749089	51749089	+	Missense_Mutation	SNP	C	C	G			TCGA-PR-A5PG-01A-11D-A35D-08	TCGA-PR-A5PG-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ffef4988-378c-4c7c-a1d3-9dc6183c15e8	3f14e246-12e1-4c08-83bb-22ad230db737	g.chr10:51749089C>G	ENST00000412531.3	+	2	317	c.245C>G	c.(244-246)gCc>gGc	p.A82G	AGAP6_ENST00000374056.4_Intron	NM_001077665.2	NP_001071133.2	C9IYN2	C9IYN2_HUMAN	ArfGAP with GTPase domain, ankyrin repeat and PH domain 6	82					regulation of ARF GTPase activity		ARF GTPase activator activity|zinc ion binding	p.A82G(1)		NS(1)|endometrium(9)|haematopoietic_and_lymphoid_tissue(1)|kidney(3)|liver(1)|lung(8)|prostate(3)|skin(1)|stomach(2)	29						AACCTTTCTGCCAATCCAGAG	0.343000													7	81					0	0	1	0	0
BRCA2	675	broad.mit.edu	37	13	32972852	32972852	+	Missense_Mutation	SNP	C	C	T	rs55853199		TCGA-PR-A5PG-01A-11D-A35D-08	TCGA-PR-A5PG-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ffef4988-378c-4c7c-a1d3-9dc6183c15e8	3f14e246-12e1-4c08-83bb-22ad230db737	g.chr13:32972852C>T	ENST00000544455.1	+	27	10429	c.10202C>T	c.(10201-10203)aCg>aTg	p.T3401M	BRCA2_ENST00000380152.3_Missense_Mutation_p.T3401M	NM_000059.3	NP_000050.2	P51587	BRCA2_HUMAN	breast cancer 2, early onset	3401					cell cycle cytokinesis|centrosome duplication|double-strand break repair via homologous recombination|negative regulation of mammary gland epithelial cell proliferation|nucleotide-excision repair|positive regulation of transcription, DNA-dependent|regulation of S phase of mitotic cell cycle	BRCA2-MAGE-D1 complex|centrosome|nucleoplasm|stored secretory granule	gamma-tubulin binding|H3 histone acetyltransferase activity|H4 histone acetyltransferase activity|protease binding|single-stranded DNA binding			NS(3)|breast(13)|central_nervous_system(5)|cervix(2)|endometrium(24)|haematopoietic_and_lymphoid_tissue(1)|kidney(10)|large_intestine(32)|liver(1)|lung(41)|oesophagus(5)|ovary(22)|pancreas(4)|prostate(3)|salivary_gland(1)|skin(11)|upper_aerodigestive_tract(2)|urinary_tract(3)	183		Lung SC(185;0.0262)		all cancers(112;7.13e-07)|Epithelial(112;1.59e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.000732)|BRCA - Breast invasive adenocarcinoma(63;0.0291)|GBM - Glioblastoma multiforme(144;0.0704)		CAGGCCAGTACGGAAGAATGT	0.398000			"""D, Mis, N, F, S"""		"""breast, ovarian, pancreatic"""	"""breast, ovarian, pancreatic, leukemia  (FANCB, FANCD1)"""		Homologous recombination	Pancreatic Cancer, Familial Clustering of;Li-Fraumeni syndrome;Hereditary Prostate Cancer;Hereditary Breast-Ovarian Cancer, BRCA2 type;Fanconi Anemia type D1, bi-allelic BRCA2 mutations;Fanconi Anemia	TCGA Ovarian(8;0.087)			4	55					0	0	1	0	0
PPP1R14B	26472	broad.mit.edu	37	11	64014017	64014017	+	Silent	SNP	C	C	G	rs1063811		TCGA-PR-A5PG-01A-11D-A35D-08	TCGA-PR-A5PG-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ffef4988-378c-4c7c-a1d3-9dc6183c15e8	3f14e246-12e1-4c08-83bb-22ad230db737	g.chr11:64014017C>G	ENST00000309318.3	-	1	396	c.129G>C	c.(127-129)ggG>ggC	p.G43G	RP11-783K16.5_ENST00000544553.1_RNA	NM_138689.2	NP_619634.1	Q96C90	PP14B_HUMAN	protein phosphatase 1, regulatory (inhibitor) subunit 14B	43					regulation of phosphorylation	cytoplasm	protein phosphatase inhibitor activity			kidney(1)|lung(1)|pancreas(1)	3						CATCGTCCGCCCCGCCCGGGC	0.721000													3	20					0	0	1	0	0
CENPI	2491	broad.mit.edu	37	X	100356051	100356051	+	Translation_Start_Site	SNP	T	T	A			TCGA-PR-A5PG-01A-11D-A35D-08	TCGA-PR-A5PG-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ffef4988-378c-4c7c-a1d3-9dc6183c15e8	3f14e246-12e1-4c08-83bb-22ad230db737	g.chrX:100356051T>A	ENST00000372927.1	+	0	269				CENPI_ENST00000372926.1_De_novo_Start_OutOfFrame|CENPI_ENST00000218507.5_De_novo_Start_OutOfFrame|CENPI_ENST00000423383.1_De_novo_Start_OutOfFrame	NM_006733.2	NP_006724.2	Q92674	CENPI_HUMAN	centromere protein I						CenH3-containing nucleosome assembly at centromere|mitotic prometaphase	cytosol|kinetochore|nucleoplasm	protein binding			breast(3)|endometrium(1)|haematopoietic_and_lymphoid_tissue(1)|kidney(2)|large_intestine(1)|lung(19)|prostate(1)|skin(2)	30						GTGTAGAACATATGCAGTAAT	0.393000													5	123					0	0	1	0	0
BPTF	2186	broad.mit.edu	37	17	65944414	65944414	+	Missense_Mutation	SNP	G	G	A			TCGA-PR-A5PG-01A-11D-A35D-08	TCGA-PR-A5PG-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ffef4988-378c-4c7c-a1d3-9dc6183c15e8	3f14e246-12e1-4c08-83bb-22ad230db737	g.chr17:65944414G>A	ENST00000321892.4	+	25	8357	c.8296G>A	c.(8296-8298)Gaa>Aaa	p.E2766K	BPTF_ENST00000335221.5_Missense_Mutation_p.E2623K|BPTF_ENST00000424123.3_Missense_Mutation_p.E2484K|BPTF_ENST00000306378.6_Missense_Mutation_p.E2640K			Q12830	BPTF_HUMAN	bromodomain PHD finger transcription factor	2766					brain development|chromatin remodeling|negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|NURF complex	sequence-specific DNA binding|transcription factor binding|zinc ion binding			NS(1)|breast(1)|central_nervous_system(3)|cervix(1)|endometrium(11)|haematopoietic_and_lymphoid_tissue(1)|kidney(5)|large_intestine(16)|lung(23)|ovary(3)|pancreas(2)|prostate(4)|skin(4)|upper_aerodigestive_tract(1)|urinary_tract(2)	78	all_cancers(12;6e-11)		BRCA - Breast invasive adenocarcinoma(8;7.48e-08)|Colorectal(3;0.0984)|LUSC - Lung squamous cell carcinoma(166;0.24)			TCTGCAAATTGAAGTGCAGGT	0.443000													5	25					0	0	1	0	0
LONRF3	79836	broad.mit.edu	37	X	118143095	118143095	+	Missense_Mutation	SNP	G	G	T			TCGA-PR-A5PG-01A-11D-A35D-08	TCGA-PR-A5PG-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ffef4988-378c-4c7c-a1d3-9dc6183c15e8	3f14e246-12e1-4c08-83bb-22ad230db737	g.chrX:118143095G>T	ENST00000365713.2	+	6	1577	c.1414G>T	c.(1414-1416)Gca>Tca	p.A472S	LONRF3_ENST00000422289.2_Missense_Mutation_p.A257S|LONRF3_ENST00000371628.3_Missense_Mutation_p.A513S|LONRF3_ENST00000472173.1_3'UTR|LONRF3_ENST00000304778.7_Missense_Mutation_p.A472S			Q496Y0	LONF3_HUMAN	LON peptidase N-terminal domain and ring finger 3	513					proteolysis		ATP-dependent peptidase activity|protein binding|zinc ion binding			NS(1)|breast(1)|central_nervous_system(1)|cervix(1)|endometrium(5)|kidney(3)|large_intestine(4)|lung(17)|ovary(1)|skin(1)|upper_aerodigestive_tract(1)	36						GTAGTGCTTGGCATCAAGAAA	0.378000													38	104					3.09479e-21	3.40427e-21	1	1	0
SH3D21	79729	broad.mit.edu	37	1	36786147	36786147	+	Missense_Mutation	SNP	T	T	C			TCGA-PR-A5PG-01A-11D-A35D-08	TCGA-PR-A5PG-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ffef4988-378c-4c7c-a1d3-9dc6183c15e8	3f14e246-12e1-4c08-83bb-22ad230db737	g.chr1:36786147T>C	ENST00000453908.2	+	14	1911	c.1883T>C	c.(1882-1884)gTg>gCg	p.V628A	SH3D21_ENST00000426732.2_Missense_Mutation_p.V512A|SH3D21_ENST00000312808.4_Missense_Mutation_p.V274A|SH3D21_ENST00000474766.1_3'UTR|SH3D21_ENST00000505871.1_Missense_Mutation_p.V517A	NM_001162530.1	NP_001156002.1	A4FU49	SH321_HUMAN	SH3 domain containing 21	512										endometrium(1)|large_intestine(6)|lung(4)|pancreas(1)	12						AAAGAGGAGGTGACCCTGAAA	0.562000													6	30					0	0	1	0	0
CDC27	996	broad.mit.edu	37	17	45219308	45219308	+	Silent	SNP	A	A	G			TCGA-PR-A5PG-01A-11D-A35D-08	TCGA-PR-A5PG-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ffef4988-378c-4c7c-a1d3-9dc6183c15e8	3f14e246-12e1-4c08-83bb-22ad230db737	g.chr17:45219308A>G	ENST00000066544.3	-	12	1555	c.1462T>C	c.(1462-1464)Ttg>Ctg	p.L488L	CDC27_ENST00000446365.2_Silent_p.L427L|CDC27_ENST00000531206.1_Silent_p.L494L|CDC27_ENST00000527547.1_Silent_p.L487L	NM_001114091.1|NM_001256.3	NP_001107563.1|NP_001247.3	P30260	CDC27_HUMAN	cell division cycle 27	488					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|cell proliferation|mitotic cell cycle spindle assembly checkpoint|mitotic metaphase/anaphase transition|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|protein K11-linked ubiquitination	anaphase-promoting complex|centrosome|cytosol|nucleoplasm|spindle microtubule	protein phosphatase binding			NS(1)|breast(5)|central_nervous_system(3)|cervix(1)|endometrium(2)|kidney(17)|large_intestine(18)|lung(11)|ovary(5)|pancreas(1)|prostate(19)|skin(5)|upper_aerodigestive_tract(2)	90						AGATGGCTCAAAATATTTATA	0.383000													73	220					0	0	1	0	0
POTEC	388468	broad.mit.edu	37	18	14542654	14542654	+	Silent	SNP	C	C	A			TCGA-PR-A5PG-01A-11D-A35D-08	TCGA-PR-A5PG-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ffef4988-378c-4c7c-a1d3-9dc6183c15e8	3f14e246-12e1-4c08-83bb-22ad230db737	g.chr18:14542654C>A	ENST00000358970.5	-	1	491	c.492G>T	c.(490-492)acG>acT	p.T164T	POTEC_ENST00000389891.4_5'UTR	NM_001137671.1	NP_001131143.1	B2RU33	POTEC_HUMAN	POTE ankyrin domain family, member C	164								p.T164T(2)		NS(2)|breast(1)|endometrium(9)|kidney(13)|lung(14)|prostate(3)|skin(6)|soft_tissue(1)|urinary_tract(3)	52						TGTTCATGTCCGTGTCCCTGA	0.592000													4	156					0.00909568	0.00909568	1	1	0
FAM53B	9679	broad.mit.edu	37	10	126370689	126370689	+	Missense_Mutation	SNP	C	C	G			TCGA-PR-A5PG-01A-11D-A35D-08	TCGA-PR-A5PG-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ffef4988-378c-4c7c-a1d3-9dc6183c15e8	3f14e246-12e1-4c08-83bb-22ad230db737	g.chr10:126370689C>G	ENST00000337318.3	-	4	604	c.393G>C	c.(391-393)agG>agC	p.R131S	FAM53B_ENST00000280780.6_Missense_Mutation_p.R131S|RP11-12J10.3_ENST00000494792.1_3'UTR|FAM53B_ENST00000392754.3_Missense_Mutation_p.R131S	NM_014661.3	NP_055476.3	Q14153	FA53B_HUMAN	family with sequence similarity 53, member B	131										cervix(1)|lung(5)|ovary(2)|pancreas(1)	9		all_lung(145;0.0191)|Lung NSC(174;0.0301)|Colorectal(57;0.106)|all_neural(114;0.117)		COAD - Colon adenocarcinoma(40;0.141)|Colorectal(40;0.15)		AGCCCAAGGGCCTCCATGATG	0.612000													6	12					0	0	1	0	0
KRT3	3850	broad.mit.edu	37	12	53189646	53189646	+	Missense_Mutation	SNP	C	C	T			TCGA-PR-A5PG-01A-11D-A35D-08	TCGA-PR-A5PG-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ffef4988-378c-4c7c-a1d3-9dc6183c15e8	3f14e246-12e1-4c08-83bb-22ad230db737	g.chr12:53189646C>T	ENST00000417996.2	-	1	255	c.181G>A	c.(181-183)Ggc>Agc	p.G61S	KRT3_ENST00000309505.3_Missense_Mutation_p.G61S	NM_057088.2	NP_476429.2	P12035	K2C3_HUMAN	keratin 3	61	Gly-rich.|Head.				epithelial cell differentiation|intermediate filament cytoskeleton organization	keratin filament	structural molecule activity			NS(1)|endometrium(3)|kidney(1)|large_intestine(7)|lung(8)|prostate(2)|skin(1)	23						TTGTTGCCGCCCAGGTTGTAG	0.667000													39	84					0	0	1	0	0
RMDN1	51115	broad.mit.edu	37	8	87498786	87498786	+	Missense_Mutation	SNP	A	A	G			TCGA-PR-A5PG-01A-11D-A35D-08	TCGA-PR-A5PG-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ffef4988-378c-4c7c-a1d3-9dc6183c15e8	3f14e246-12e1-4c08-83bb-22ad230db737	g.chr8:87498786A>G	ENST00000406452.3	-	4	581	c.422T>C	c.(421-423)cTa>cCa	p.L141P	RMDN1_ENST00000523911.1_Missense_Mutation_p.L97P|CPNE3_ENST00000198765.4_Intron|RMDN1_ENST00000519966.1_Missense_Mutation_p.L141P|RMDN1_ENST00000430676.2_Missense_Mutation_p.L141P	NM_016033.2	NP_057117.2			regulator of microtubule dynamics 1																		ATACACCAATAGCTTTTTCTC	0.398000													33	67					0	0	1	0	0
ITGA10	8515	broad.mit.edu	37	1	145538808	145538808	+	Splice_Site	SNP	G	G	A			TCGA-PR-A5PG-01A-11D-A35D-08	TCGA-PR-A5PG-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ffef4988-378c-4c7c-a1d3-9dc6183c15e8	3f14e246-12e1-4c08-83bb-22ad230db737	g.chr1:145538808G>A	ENST00000369304.3	+	24	3094	c.2919_splice	c.e24+1	p.R973_splice	ITGA10_ENST00000539363.1_Splice_Site_p.R830_splice|ITGA10_ENST00000538811.1_Splice_Site_p.R842_splice	NM_003637.3	NP_003628.2	O75578	ITA10_HUMAN	integrin, alpha 10	973					cell-matrix adhesion|integrin-mediated signaling pathway	integrin complex	collagen binding|receptor activity	p.R973S(1)		NS(1)|breast(2)|endometrium(3)|kidney(5)|large_intestine(12)|lung(25)|ovary(2)|prostate(3)|skin(3)|upper_aerodigestive_tract(2)|urinary_tract(1)	59	all_hematologic(18;0.0187)|Acute lymphoblastic leukemia(18;0.0786)					CCACTCTCAGGGTGAGAAGCT	0.522000													16	26					0	0	1	0	0
ERVFRD-1	405754	broad.mit.edu	37	6	11105081	11105081	+	Nonsense_Mutation	SNP	G	G	A			TCGA-PR-A5PG-01A-11D-A35D-08	TCGA-PR-A5PG-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ffef4988-378c-4c7c-a1d3-9dc6183c15e8	3f14e246-12e1-4c08-83bb-22ad230db737	g.chr6:11105081G>A	ENST00000472091.1	-	2	838	c.463C>T	c.(463-465)Caa>Taa	p.Q155*	SMIM13_ENST00000416247.2_Intron|ERVFRD-1_ENST00000542862.1_Nonsense_Mutation_p.Q155*	NM_207582.2	NP_997465.1	P60508	EFRD1_HUMAN		155						integral to membrane|plasma membrane|virion				breast(1)|endometrium(2)|kidney(1)|large_intestine(4)|lung(2)|ovary(4)|stomach(1)	15						TAAGTCTGTTGGTTAGAATCT	0.393000													6	398					0	0	1	0	0
CACNA1D	776	broad.mit.edu	37	3	53839013	53839013	+	Silent	SNP	A	A	G			TCGA-PR-A5PG-01A-11D-A35D-08	TCGA-PR-A5PG-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ffef4988-378c-4c7c-a1d3-9dc6183c15e8	3f14e246-12e1-4c08-83bb-22ad230db737	g.chr3:53839013A>G	ENST00000288139.3	+	46	5767	c.5649A>G	c.(5647-5649)caA>caG	p.Q1883Q	CACNA1D_ENST00000422281.2_Silent_p.Q1839Q|CACNA1D_ENST00000350061.5_Silent_p.Q1863Q|CACNA1D_ENST00000544977.1_Silent_p.Q242Q	NM_000720.2	NP_000711.1	Q01668	CAC1D_HUMAN	calcium channel, voltage-dependent, L type, alpha 1D subunit	1863					axon guidance|energy reserve metabolic process|regulation of insulin secretion	voltage-gated calcium channel complex	voltage-gated calcium channel activity			breast(3)|central_nervous_system(9)|cervix(2)|endometrium(11)|kidney(7)|large_intestine(13)|liver(1)|lung(29)|ovary(6)|prostate(2)|skin(4)|upper_aerodigestive_tract(2)|urinary_tract(1)	90				BRCA - Breast invasive adenocarcinoma(193;0.00029)|KIRC - Kidney renal clear cell carcinoma(284;0.0145)|Kidney(284;0.0175)|OV - Ovarian serous cystadenocarcinoma(275;0.0613)	Verapamil(DB00661)	CCTCCAGGCAAAACTATGGCT	0.552000													28	33					0	0	1	0	0
PCMTD2	55251	broad.mit.edu	37	20	62904858	62904858	+	Missense_Mutation	SNP	C	C	T			TCGA-PR-A5PG-01A-11D-A35D-08	TCGA-PR-A5PG-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ffef4988-378c-4c7c-a1d3-9dc6183c15e8	3f14e246-12e1-4c08-83bb-22ad230db737	g.chr20:62904858C>T	ENST00000308824.6	+	6	1118	c.991C>T	c.(991-993)Cca>Tca	p.P331S	PCMTD2_ENST00000369758.3_Missense_Mutation_p.P304S|PCMTD2_ENST00000299468.7_Intron|PCMTD2_ENST00000266078.6_Missense_Mutation_p.P107S	NM_018257.2	NP_060727.2	Q9NV79	PCMD2_HUMAN	protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 2	331						cytoplasm	protein-L-isoaspartate (D-aspartate) O-methyltransferase activity			breast(1)|endometrium(2)|haematopoietic_and_lymphoid_tissue(2)|kidney(2)|lung(9)|upper_aerodigestive_tract(1)	17	all_cancers(38;1.82e-11)|all_epithelial(29;3.3e-13)|Lung NSC(23;5.21e-10)|all_lung(23;1.92e-09)					GGAAACAAAGCCAGACCCCCC	0.507000													52	78					0	0	1	0	0
KCNB1	3745	broad.mit.edu	37	20	47991070	47991070	+	Missense_Mutation	SNP	T	T	C			TCGA-PR-A5PG-01A-11D-A35D-08	TCGA-PR-A5PG-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ffef4988-378c-4c7c-a1d3-9dc6183c15e8	3f14e246-12e1-4c08-83bb-22ad230db737	g.chr20:47991070T>C	ENST00000371741.4	-	2	1193	c.1027A>G	c.(1027-1029)Atg>Gtg	p.M343V		NM_004975.2	NP_004966.1	Q14721	KCNB1_HUMAN	potassium voltage-gated channel, Shab-related subfamily, member 1	343					energy reserve metabolic process|regulation of insulin secretion	voltage-gated potassium channel complex	protein binding|voltage-gated potassium channel activity			central_nervous_system(1)|endometrium(4)|kidney(2)|large_intestine(8)|liver(1)|lung(22)|pancreas(2)|prostate(7)|skin(4)|stomach(1)|urinary_tract(1)	53			BRCA - Breast invasive adenocarcinoma(12;0.000405)|COAD - Colon adenocarcinoma(4;0.14)|Colorectal(8;0.166)			GAGAAGATCATAATGCCCATG	0.537000													17	32					0	0	1	0	0
MUC5B	727897	broad.mit.edu	37	11	1270623	1270623	+	Silent	SNP	C	C	A			TCGA-PR-A5PG-01A-11D-A35D-08	TCGA-PR-A5PG-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ffef4988-378c-4c7c-a1d3-9dc6183c15e8	3f14e246-12e1-4c08-83bb-22ad230db737	g.chr11:1270623C>A	ENST00000447027.1	+	31	12580	c.12522C>A	c.(12520-12522)ggC>ggA	p.G4174G	MUC5B_ENST00000529681.1_Silent_p.G4171G|RP11-532E4.2_ENST00000532061.2_RNA			Q9HC84	MUC5B_HUMAN	mucin 5B, oligomeric mucus/gel-forming	4171	7 X Cys-rich subdomain repeats.|Thr-rich.				cell adhesion	extracellular region	extracellular matrix structural constituent|protein binding			cervix(2)|endometrium(36)|kidney(9)|lung(89)|urinary_tract(1)	137		all_cancers(49;6.97e-08)|all_epithelial(84;3.45e-05)|Breast(177;0.000307)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.229)		BRCA - Breast invasive adenocarcinoma(625;0.00141)|Lung(200;0.0853)|LUSC - Lung squamous cell carcinoma(625;0.1)		AGCCCCTGGGCCTCGAGTGCC	0.682000													25	76					4.62619e-21	4.96469e-21	1	1	0
C16orf71	146562	broad.mit.edu	37	16	4787829	4787829	+	Missense_Mutation	SNP	T	T	A	rs141702834		TCGA-PR-A5PG-01A-11D-A35D-08	TCGA-PR-A5PG-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ffef4988-378c-4c7c-a1d3-9dc6183c15e8	3f14e246-12e1-4c08-83bb-22ad230db737	g.chr16:4787829T>A	ENST00000299320.5	+	3	636	c.158T>A	c.(157-159)aTc>aAc	p.I53N	RP11-127I20.7_ENST00000588099.1_RNA|C16orf71_ENST00000590191.1_Missense_Mutation_p.I53N	NM_139170.2	NP_631909.2	Q8IYS4	CP071_HUMAN	chromosome 16 open reading frame 71	53										breast(1)|central_nervous_system(1)|large_intestine(4)|lung(4)|ovary(1)	11						GAGCTGTTCATCTTCCAGCGA	0.602000													6	65					0	0	1	0	0
RP11-483E23.2	0	broad.mit.edu	37	15	28600002	28600002	+	RNA	SNP	T	T	A			TCGA-PR-A5PG-01A-11D-A35D-08	TCGA-PR-A5PG-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ffef4988-378c-4c7c-a1d3-9dc6183c15e8	3f14e246-12e1-4c08-83bb-22ad230db737	g.chr15:28600002T>A	ENST00000568624.1	-	0	404																											TTCGTATGGTTTGAACCTGGG	0.493000													4	102					0	0	1	0	0
F8	2157	broad.mit.edu	37	X	154159643	154159643	+	Missense_Mutation	SNP	C	C	T			TCGA-PR-A5PG-01A-11D-A35D-08	TCGA-PR-A5PG-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ffef4988-378c-4c7c-a1d3-9dc6183c15e8	3f14e246-12e1-4c08-83bb-22ad230db737	g.chrX:154159643C>T	ENST00000360256.4	-	14	2622	c.2422G>A	c.(2422-2424)Gat>Aat	p.D808N		NM_000132.3	NP_000123.1	P00451	FA8_HUMAN	coagulation factor VIII, procoagulant component	808	B.				acute-phase response|blood coagulation, intrinsic pathway|cell adhesion|platelet activation|platelet degranulation	extracellular space|plasma membrane|platelet alpha granule lumen	copper ion binding|oxidoreductase activity|protein binding			NS(1)|breast(3)|central_nervous_system(1)|cervix(1)|endometrium(9)|haematopoietic_and_lymphoid_tissue(3)|kidney(6)|large_intestine(27)|liver(1)|lung(47)|ovary(5)|pancreas(3)|prostate(1)|skin(5)|upper_aerodigestive_tract(5)|urinary_tract(2)	120	all_cancers(53;7.19e-17)|all_epithelial(53;9.83e-11)|all_lung(58;6.63e-07)|Lung NSC(58;2.08e-06)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)|Renal(33;0.214)				Antihemophilic Factor(DB00025)|Coagulation Factor IX(DB00100)|Drotrecogin alfa(DB00055)	ATCAACAAATCACTAGAGGAG	0.413000													67	90					0	0	1	0	0
LOC100294341	100294341	broad.mit.edu	37	17	43587569	43587569	+	RNA	SNP	G	G	C	rs149697015	by1000genomes	TCGA-PR-A5PG-01A-11D-A35D-08	TCGA-PR-A5PG-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ffef4988-378c-4c7c-a1d3-9dc6183c15e8	3f14e246-12e1-4c08-83bb-22ad230db737	g.chr17:43587569G>C	ENST00000253803.2	+	0	267				LRRC37A4P_ENST00000579913.1_RNA																							aactccgtctgaaaagaaaag	0.443000													3	48					0	0	1	0	0
LOC100294341	100294341	broad.mit.edu	37	17	43587576	43587576	+	RNA	SNP	A	A	G	rs145439557	by1000genomes	TCGA-PR-A5PG-01A-11D-A35D-08	TCGA-PR-A5PG-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ffef4988-378c-4c7c-a1d3-9dc6183c15e8	3f14e246-12e1-4c08-83bb-22ad230db737	g.chr17:43587576A>G	ENST00000253803.2	+	0	267				LRRC37A4P_ENST00000579913.1_RNA																							tctgaaaagaaaagaaaaaaa	0.428000													4	53					0	0	1	0	0
MIR124-2HG	100130155	broad.mit.edu	37	8	65291905	65291905	+	RNA	SNP	A	A	T			TCGA-PR-A5PG-01A-11D-A35D-08	TCGA-PR-A5PG-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ffef4988-378c-4c7c-a1d3-9dc6183c15e8	3f14e246-12e1-4c08-83bb-22ad230db737	g.chr8:65291905A>T	ENST00000521441.1	+	0	655																											TTGCCGCATAAATGCCCCCCA	0.512000													7	5					0	0	1	0	0
CSPG4	1464	broad.mit.edu	37	15	75982728	75982728	+	Silent	SNP	T	T	C			TCGA-PR-A5PG-01A-11D-A35D-08	TCGA-PR-A5PG-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ffef4988-378c-4c7c-a1d3-9dc6183c15e8	3f14e246-12e1-4c08-83bb-22ad230db737	g.chr15:75982728T>C	ENST00000308508.5	-	3	770	c.678A>G	c.(676-678)ctA>ctG	p.L226L		NM_001897.4	NP_001888.2	Q6UVK1	CSPG4_HUMAN	chondroitin sulfate proteoglycan 4	226	Globular or compact configuration stabilized by disulfide bonds.|Laminin G-like 2.|Neurite growth inhibition (By similarity).				angiogenesis|cell differentiation|intracellular signal transduction|positive regulation of peptidyl-tyrosine phosphorylation|tissue remodeling	apical plasma membrane|cell surface|integral to plasma membrane|intracellular|lamellipodium membrane	protein kinase binding|signal transducer activity			breast(1)|cervix(2)|endometrium(5)|kidney(5)|large_intestine(3)|liver(2)|lung(18)|ovary(2)|pancreas(2)|prostate(4)|skin(4)	48						GTGTAAACTCTAGGGTTCCTT	0.607000													3	46					0	0	1	0	0
CACHD1	57685	broad.mit.edu	37	1	65124466	65124466	+	Missense_Mutation	SNP	A	A	C			TCGA-PR-A5PG-01A-11D-A35D-08	TCGA-PR-A5PG-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ffef4988-378c-4c7c-a1d3-9dc6183c15e8	3f14e246-12e1-4c08-83bb-22ad230db737	g.chr1:65124466A>C	ENST00000371073.2	+	13	1861	c.1861A>C	c.(1861-1863)Act>Cct	p.T621P	CACHD1_ENST00000290039.5_Missense_Mutation_p.T570P|CACHD1_ENST00000495994.1_3'UTR			Q5VU97	CAHD1_HUMAN	cache domain containing 1	621					calcium ion transport	integral to membrane				breast(4)|endometrium(3)|kidney(3)|large_intestine(20)|lung(14)|ovary(2)|pancreas(1)|prostate(5)|skin(1)|upper_aerodigestive_tract(1)|urinary_tract(1)	55						GAACCTCAACACTGTTCCCAG	0.463000													11	8					0	0	1	0	0
TMCO4	255104	broad.mit.edu	37	1	20067293	20067293	+	Missense_Mutation	SNP	G	G	A			TCGA-PR-A5PG-01A-11D-A35D-08	TCGA-PR-A5PG-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ffef4988-378c-4c7c-a1d3-9dc6183c15e8	3f14e246-12e1-4c08-83bb-22ad230db737	g.chr1:20067293G>A	ENST00000294543.6	-	11	1260	c.1019C>T	c.(1018-1020)gCc>gTc	p.A340V	TMCO4_ENST00000375122.2_Missense_Mutation_p.A300V|TMCO4_ENST00000375127.1_Missense_Mutation_p.A340V	NM_181719.4	NP_859070.3	Q5TGY1	TMCO4_HUMAN	transmembrane and coiled-coil domains 4	340						integral to membrane				biliary_tract(1)|breast(2)|endometrium(2)|kidney(1)|lung(11)|skin(1)|upper_aerodigestive_tract(1)	19		Colorectal(325;0.000147)|Renal(390;0.000469)|all_lung(284;0.00519)|Breast(348;0.00526)|Lung NSC(340;0.00544)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0439)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00708)|COAD - Colon adenocarcinoma(152;2.28e-05)|BRCA - Breast invasive adenocarcinoma(304;5.8e-05)|Kidney(64;0.000367)|GBM - Glioblastoma multiforme(114;0.000377)|KIRC - Kidney renal clear cell carcinoma(64;0.00459)|STAD - Stomach adenocarcinoma(196;0.0072)|READ - Rectum adenocarcinoma(331;0.0862)|Lung(427;0.223)		GTACTTTAGGGCCTCCTGGGC	0.577000													21	6					0	0	1	0	0
GPR50	9248	broad.mit.edu	37	X	150345211	150345211	+	Silent	SNP	G	G	A			TCGA-PR-A5PG-01A-11D-A35D-08	TCGA-PR-A5PG-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ffef4988-378c-4c7c-a1d3-9dc6183c15e8	3f14e246-12e1-4c08-83bb-22ad230db737	g.chrX:150345211G>A	ENST00000218316.3	+	1	87	c.18G>A	c.(16-18)gcG>gcA	p.A6A	GPR50-AS1_ENST00000454196.1_RNA	NM_004224.3	NP_004215.2	Q13585	MTR1L_HUMAN	G protein-coupled receptor 50	6					cell-cell signaling	integral to plasma membrane	melatonin receptor activity			breast(4)|central_nervous_system(1)|endometrium(8)|kidney(1)|large_intestine(6)|lung(14)|ovary(1)|pancreas(1)|prostate(1)|stomach(1)	38	Acute lymphoblastic leukemia(192;6.56e-05)					CCACCCTAGCGGTTCCCACCC	0.557000													4	112					0	0	1	0	0
AGAP6	414189	broad.mit.edu	37	10	51749117	51749117	+	Silent	SNP	G	G	A			TCGA-PR-A5PG-01A-11D-A35D-08	TCGA-PR-A5PG-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ffef4988-378c-4c7c-a1d3-9dc6183c15e8	3f14e246-12e1-4c08-83bb-22ad230db737	g.chr10:51749117G>A	ENST00000412531.3	+	2	345	c.273G>A	c.(271-273)caG>caA	p.Q91Q	AGAP6_ENST00000374056.4_Intron	NM_001077665.2	NP_001071133.2	C9IYN2	C9IYN2_HUMAN	ArfGAP with GTPase domain, ankyrin repeat and PH domain 6	91					regulation of ARF GTPase activity		ARF GTPase activator activity|zinc ion binding	p.Q91Q(1)		NS(1)|endometrium(9)|haematopoietic_and_lymphoid_tissue(1)|kidney(3)|liver(1)|lung(8)|prostate(3)|skin(1)|stomach(2)	29						CAATATTCCAGAGGAACTCTC	0.358000													5	67					0	0	1	0	0
CROCCP3	114819	broad.mit.edu	37	1	16810763	16810763	+	RNA	DEL	G	G	-			TCGA-PR-A5PG-01A-11D-A35D-08	TCGA-PR-A5PG-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ffef4988-378c-4c7c-a1d3-9dc6183c15e8	3f14e246-12e1-4c08-83bb-22ad230db737	g.chr1:16810763delG	ENST00000263511.4	-	0	1768					NR_023386.1																						AAGGTGGAGTGGATCAGGGCG	0.716													2	4	---	---	---	---					
KIAA1984	84960	broad.mit.edu	37	9	139694454	139694455	+	Splice_Site	INS	-	-	AAGA			TCGA-PR-A5PG-01A-11D-A35D-08	TCGA-PR-A5PG-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ffef4988-378c-4c7c-a1d3-9dc6183c15e8	3f14e246-12e1-4c08-83bb-22ad230db737	g.chr9:139694454_139694455insAAGA	ENST00000338005.6	+	4	306_307	c.270_splice	c.e4-1	p.G91_splice	KIAA1984_ENST00000371682.3_3'UTR	NM_001039374.4	NP_001034463.4	Q5T5S1	K1984_HUMAN	KIAA1984	91										biliary_tract(1)|breast(1)|endometrium(1)|kidney(2)|lung(4)|ovary(1)|pancreas(1)|prostate(1)|urinary_tract(1)	13	all_cancers(76;0.0882)|all_epithelial(76;0.228)	Myeloproliferative disorder(178;0.0511)		OV - Ovarian serous cystadenocarcinoma(145;9.33e-06)|Epithelial(140;0.000124)		CCCGACCCAGGTGGTGCGGGAG	0.688													2	4	---	---	---	---					
IQSEC3P1	100132450	broad.mit.edu	37	12	2861801	2861801	+	RNA	DEL	G	G	-			TCGA-PR-A5PG-01A-11D-A35D-08	TCGA-PR-A5PG-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ffef4988-378c-4c7c-a1d3-9dc6183c15e8	3f14e246-12e1-4c08-83bb-22ad230db737	g.chr12:2861801delG	ENST00000540093.1	-	0	56																											CCGAGGGCGCGGGGCATTTGT	0.637													2	4	---	---	---	---					
ABCC6P1	653190	broad.mit.edu	37	16	18593649	18593649	+	RNA	DEL	A	A	-			TCGA-PR-A5PG-01A-11D-A35D-08	TCGA-PR-A5PG-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ffef4988-378c-4c7c-a1d3-9dc6183c15e8	3f14e246-12e1-4c08-83bb-22ad230db737	g.chr16:18593649delA	ENST00000546162.2	+	0	805					NR_003569.1																						ccctgtctcgaaaaaaaaaaa	0.507													3	4	---	---	---	---					
SMG1P3	100271836	broad.mit.edu	37	16	21469994	21469994	+	RNA	DEL	A	A	-			TCGA-PR-A5PG-01A-11D-A35D-08	TCGA-PR-A5PG-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ffef4988-378c-4c7c-a1d3-9dc6183c15e8	3f14e246-12e1-4c08-83bb-22ad230db737	g.chr16:21469994delA	ENST00000520823.2	-	0	749																											ACTGTACATTAAAAAAAAAAA	0.294													3	6	---	---	---	---					
SCARNA15	677778	broad.mit.edu	37	20	41933319	41933321	+	RNA	DEL	AAA	AAA	-	rs79619980		TCGA-PR-A5PG-01A-11D-A35D-08	TCGA-PR-A5PG-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ffef4988-378c-4c7c-a1d3-9dc6183c15e8	3f14e246-12e1-4c08-83bb-22ad230db737	g.chr20:41933319_41933321delAAA	ENST00000516384.1	+	0	125																											TATCaatagcaaaaaaaaaaaaa	0.315													2	4	---	---	---	---