Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_alt_allele	validation_method	validation_status	validation_tumor_sample	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
KIAA1755	85449	broad.mit.edu	37	20	36869018	36869018	+	Silent	SNP	A	A	G			TCGA-RW-A68G-01A-11D-A35D-08	TCGA-RW-A68G-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3090bbdb-582e-46bd-ab43-41c968f4be0c	323d00c1-97c4-48fa-8dd1-6b48bb588fcc	g.chr20:36869018A>G	ENST00000279024.4	-	3	1786	c.1515T>C	c.(1513-1515)tcT>tcC	p.S505S		NM_001029864.1	NP_001025035.1	Q5JYT7	K1755_HUMAN	KIAA1755	505										breast(2)|endometrium(3)|kidney(1)|large_intestine(5)|lung(31)|ovary(5)|pancreas(2)|skin(4)|stomach(1)	54		Myeloproliferative disorder(115;0.00874)				TGGGTTTAGGAGAGTAGAGGG	0.507000													5	88					0	0	1	0	0
NBEA	26960	broad.mit.edu	37	13	35644944	35644944	+	Missense_Mutation	SNP	T	T	C			TCGA-RW-A68G-01A-11D-A35D-08	TCGA-RW-A68G-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3090bbdb-582e-46bd-ab43-41c968f4be0c	323d00c1-97c4-48fa-8dd1-6b48bb588fcc	g.chr13:35644944T>C	ENST00000400445.3	+	10	2060	c.1526T>C	c.(1525-1527)tTg>tCg	p.L509S	NBEA_ENST00000310336.4_Missense_Mutation_p.L509S|NBEA_ENST00000540320.1_Missense_Mutation_p.L509S|NBEA_ENST00000379939.2_Missense_Mutation_p.L509S	NM_015678.4	NP_056493.3	Q8NFP9	NBEA_HUMAN	neurobeachin	509						cytosol|endomembrane system|plasma membrane|trans-Golgi network	protein binding			NS(1)|breast(1)|endometrium(14)|kidney(4)|large_intestine(29)|lung(40)|ovary(9)|prostate(3)|skin(1)|stomach(1)|upper_aerodigestive_tract(2)|urinary_tract(3)	108		Breast(139;0.0141)|Lung SC(185;0.0548)|Prostate(109;0.207)		all cancers(112;1.93e-08)|Epithelial(112;1.62e-07)|BRCA - Breast invasive adenocarcinoma(63;0.00033)|OV - Ovarian serous cystadenocarcinoma(117;0.00109)|KIRC - Kidney renal clear cell carcinoma(186;0.00575)|Kidney(163;0.00656)|GBM - Glioblastoma multiforme(144;0.191)|Lung(94;0.199)		TTTGCCCAATTGGATAATAGG	0.363000													11	58					0	0	1	0	0
LRRC37BP1	147172	broad.mit.edu	37	17	28960263	28960263	+	RNA	SNP	C	C	T			TCGA-RW-A68G-01A-11D-A35D-08	TCGA-RW-A68G-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3090bbdb-582e-46bd-ab43-41c968f4be0c	323d00c1-97c4-48fa-8dd1-6b48bb588fcc	g.chr17:28960263C>T	ENST00000417404.1	+	0	1124				SMURF2P1_ENST00000578265.1_RNA|LRRC37BP1_ENST00000412831.1_RNA																							AAGCTCATGTCGCGAACAGGC	0.443000													3	46					0	0	1	0	0
TSPAN13	27075	broad.mit.edu	37	7	16818665	16818665	+	Missense_Mutation	SNP	C	C	T			TCGA-RW-A68G-01A-11D-A35D-08	TCGA-RW-A68G-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3090bbdb-582e-46bd-ab43-41c968f4be0c	323d00c1-97c4-48fa-8dd1-6b48bb588fcc	g.chr7:16818665C>T	ENST00000262067.4	+	5	897	c.464C>T	c.(463-465)gCt>gTt	p.A155V	TSPAN13_ENST00000466195.1_3'UTR	NM_014399.3	NP_055214.1	O95857	TSN13_HUMAN	tetraspanin 13	155						integral to plasma membrane|membrane fraction				autonomic_ganglia(1)|endometrium(1)|large_intestine(1)|ovary(1)|prostate(1)|skin(1)|stomach(1)	7	Lung NSC(10;0.0494)|all_lung(11;0.109)			UCEC - Uterine corpus endometrioid carcinoma (126;0.188)		TCGCCATGTGCTCCAATCATA	0.358000													17	58					0	0	1	0	0
DHRS4	10901	broad.mit.edu	37	14	24424420	24424420	+	Splice_Site	SNP	C	C	T			TCGA-RW-A68G-01A-11D-A35D-08	TCGA-RW-A68G-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3090bbdb-582e-46bd-ab43-41c968f4be0c	323d00c1-97c4-48fa-8dd1-6b48bb588fcc	g.chr14:24424420C>T	ENST00000313250.5	+	2	508	c.306_splice	c.e2+1	p.T102_splice	DHRS4_ENST00000397073.2_Splice_Site_p.T84_splice|DHRS4_ENST00000308178.8_Splice_Site_p.T84_splice|DHRS4_ENST00000397074.3_Splice_Site_p.T102_splice|DHRS4_ENST00000397075.3_Splice_Site_p.T102_splice|DHRS4_ENST00000558263.1_Splice_Site_p.T102_splice|DHRS4_ENST00000558581.1_Splice_Site_p.T102_splice|DHRS4_ENST00000382761.3_Splice_Site_p.T84_splice|DHRS4_ENST00000543741.2_Splice_Site_p.T102_splice|DHRS4_ENST00000559632.1_Splice_Site_p.T102_splice|DHRS4_ENST00000421831.1_Splice_Site_p.T84_splice	NM_021004.2	NP_066284.2	Q9BTZ2	DHRS4_HUMAN	dehydrogenase/reductase (SDR family) member 4	102				T -> M (in Ref. 1; AAD02292).		mitochondrion|nuclear membrane|peroxisome	binding|carbonyl reductase (NADPH) activity	p.T102M(4)		central_nervous_system(2)|endometrium(1)|kidney(3)|large_intestine(1)|lung(4)|ovary(1)|skin(1)|upper_aerodigestive_tract(1)	14				GBM - Glioblastoma multiforme(265;0.00962)	Vitamin A(DB00162)	CTGGTGGCCACGGTGAGCTGC	0.652000													3	17					0	0	1	0	0
RAD51AP2	729475	broad.mit.edu	37	2	17696549	17696549	+	Missense_Mutation	SNP	T	T	C			TCGA-RW-A68G-01A-11D-A35D-08	TCGA-RW-A68G-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3090bbdb-582e-46bd-ab43-41c968f4be0c	323d00c1-97c4-48fa-8dd1-6b48bb588fcc	g.chr2:17696549T>C	ENST00000399080.2	-	1	3157	c.3134A>G	c.(3133-3135)cAa>cGa	p.Q1045R		NM_001099218.2	NP_001092688.1	Q09MP3	R51A2_HUMAN	RAD51 associated protein 2	1045										endometrium(6)|haematopoietic_and_lymphoid_tissue(1)|kidney(6)|large_intestine(10)|liver(1)|lung(17)|ovary(1)|pancreas(1)|prostate(1)|skin(1)|upper_aerodigestive_tract(2)|urinary_tract(2)	49	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.158)					AAATAAACTTTGGTGACTTTT	0.358000													4	60					0	0	1	0	0
NBPF10	100132406	broad.mit.edu	37	1	145296418	145296418	+	Missense_Mutation	SNP	C	C	T			TCGA-RW-A68G-01A-11D-A35D-08	TCGA-RW-A68G-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3090bbdb-582e-46bd-ab43-41c968f4be0c	323d00c1-97c4-48fa-8dd1-6b48bb588fcc	g.chr1:145296418C>T	ENST00000342960.5	+	3	375	c.340C>T	c.(340-342)Cgg>Tgg	p.R114W	NBPF10_ENST00000369338.1_Intron|RP11-458D21.5_ENST00000468030.1_3'UTR|NBPF10_ENST00000369339.2_Intron	NM_001039703.4	NP_001034792.4	A6NDV3	A6NDV3_HUMAN	neuroblastoma breakpoint family, member 10	114										NS(3)|breast(1)|central_nervous_system(3)|endometrium(12)|kidney(23)|lung(15)|ovary(1)|prostate(7)|skin(6)|urinary_tract(2)	73	all_hematologic(923;0.032)			Colorectal(1306;1.36e-07)|KIRC - Kidney renal clear cell carcinoma(1967;0.00258)		GGAGAAGTTACGGGAAGGGAG	0.522000													5	324					0	0	1	0	0
NBPF10	100132406	broad.mit.edu	37	1	145367739	145367739	+	Silent	SNP	A	A	G	rs146714035	by1000genomes	TCGA-RW-A68G-01A-11D-A35D-08	TCGA-RW-A68G-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3090bbdb-582e-46bd-ab43-41c968f4be0c	323d00c1-97c4-48fa-8dd1-6b48bb588fcc	g.chr1:145367739A>G	ENST00000342960.5	+	83	10370	c.10335A>G	c.(10333-10335)aaA>aaG	p.K3445K	NBPF10_ENST00000369338.1_Intron|NBPF10_ENST00000369339.2_Intron	NM_001039703.4	NP_001034792.4	A6NDV3	A6NDV3_HUMAN	neuroblastoma breakpoint family, member 10	3445								p.K3445K(4)		NS(3)|breast(1)|central_nervous_system(3)|endometrium(12)|kidney(23)|lung(15)|ovary(1)|prostate(7)|skin(6)|urinary_tract(2)	73	all_hematologic(923;0.032)			Colorectal(1306;1.36e-07)|KIRC - Kidney renal clear cell carcinoma(1967;0.00258)		ggaaggggaaaaaaagaaggg	0.413000													5	119					0	0	1	0	0
LOC645752	645752	broad.mit.edu	37	15	78208916	78208916	+	RNA	SNP	C	C	G	rs56290535	by1000genomes	TCGA-RW-A68G-01A-11D-A35D-08	TCGA-RW-A68G-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3090bbdb-582e-46bd-ab43-41c968f4be0c	323d00c1-97c4-48fa-8dd1-6b48bb588fcc	g.chr15:78208916C>G	ENST00000565869.1	+	0	53																											TCCAGATGTTCTCCTCCATCT	0.627000													4	56					0	0	1	0	0
HSPA1L	3305	broad.mit.edu	37	6	31779583	31779583	+	Missense_Mutation	SNP	G	G	A			TCGA-RW-A68G-01A-11D-A35D-08	TCGA-RW-A68G-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3090bbdb-582e-46bd-ab43-41c968f4be0c	323d00c1-97c4-48fa-8dd1-6b48bb588fcc	g.chr6:31779583G>A	ENST00000375654.4	-	2	356	c.167C>T	c.(166-168)gCg>gTg	p.A56V	HSPA1L_ENST00000417199.3_Missense_Mutation_p.A56V	NM_005527.3	NP_005518.3	P34931	HS71L_HUMAN	heat shock 70kDa protein 1-like	56					response to unfolded protein		ATP binding			breast(1)|endometrium(3)|kidney(2)|large_intestine(10)|lung(10)|ovary(3)|pleura(1)|prostate(2)|skin(1)|upper_aerodigestive_tract(1)	34						GTTCTTGGCCGCATCCCCAAT	0.532000													4	115					0	0	1	0	0
NOMO1	23420	broad.mit.edu	37	16	14972620	14972620	+	Missense_Mutation	SNP	T	T	C			TCGA-RW-A68G-01A-11D-A35D-08	TCGA-RW-A68G-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3090bbdb-582e-46bd-ab43-41c968f4be0c	323d00c1-97c4-48fa-8dd1-6b48bb588fcc	g.chr16:14972620T>C	ENST00000287667.7	+	23	2857	c.2686T>C	c.(2686-2688)Tcc>Ccc	p.S896P		NM_014287.3	NP_055102.3	Q15155	NOMO1_HUMAN	NODAL modulator 1	896						integral to membrane	carbohydrate binding|carboxypeptidase activity|protein binding			endometrium(6)|kidney(1)|large_intestine(6)|lung(12)|ovary(2)|pancreas(1)|skin(2)	30						AGTCCTCTTATCCCTGAGCGG	0.498000													16	160					0	0	1	0	0
CDH11	1009	broad.mit.edu	37	16	65038741	65038741	+	Frame_Shift_Del	DEL	A	A	-			TCGA-RW-A68G-01A-11D-A35D-08	TCGA-RW-A68G-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3090bbdb-582e-46bd-ab43-41c968f4be0c	323d00c1-97c4-48fa-8dd1-6b48bb588fcc	g.chr16:65038741delA	ENST00000394156.3	-	3	485	c.32delT	c.(31-33)cgfs	p.L11fs	CDH11_ENST00000569624.1_5'UTR|CDH11_ENST00000566827.1_Intron|CDH11_ENST00000268603.4_Frame_Shift_Del_p.L11fs			P55287	CAD11_HUMAN	cadherin 11, type 2, OB-cadherin (osteoblast)	11					adherens junction organization|cell junction assembly|homophilic cell adhesion|ossification|skeletal system development	integral to membrane|plasma membrane	calcium ion binding|protein binding			NS(1)|breast(1)|central_nervous_system(1)|endometrium(6)|haematopoietic_and_lymphoid_tissue(5)|kidney(5)|large_intestine(19)|lung(40)|ovary(3)|prostate(3)|skin(2)|urinary_tract(2)	88		Ovarian(137;0.0973)		OV - Ovarian serous cystadenocarcinoma(108;0.205)		CAGGCACACCAGGGCGGCTTG	0.597			T	USP6	aneurysmal bone cysts					TSP Lung(24;0.17)			2	4	---	---	---	---