Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID Genome_Change Annotation_Transcript Transcript_Strand Transcript_Exon Transcript_Position cDNA_Change Codon_Change Protein_Change Other_Transcripts Refseq_mRNA_Id Refseq_prot_Id SwissProt_acc_Id SwissProt_entry_Id Description UniProt_AApos UniProt_Region UniProt_Site UniProt_Natural_Variations UniProt_Experimental_Info GO_Biological_Process GO_Cellular_Component GO_Molecular_Function COSMIC_overlapping_mutations COSMIC_fusion_genes COSMIC_tissue_types_affected COSMIC_total_alterations_in_gene Tumorscape_Amplification_Peaks Tumorscape_Deletion_Peaks TCGAscape_Amplification_Peaks TCGAscape_Deletion_Peaks DrugBank ref_context gc_content CCLE_ONCOMAP_overlapping_mutations CCLE_ONCOMAP_total_mutations_in_gene CGC_Mutation_Type CGC_Translocation_Partner CGC_Tumor_Types_Somatic CGC_Tumor_Types_Germline CGC_Other_Diseases DNARepairGenes_Role FamilialCancerDatabase_Syndromes MUTSIG_Published_Results OREGANNO_ID OREGANNO_Values t_alt_count t_ref_count validation_alt_allele validation_method validation_status validation_tumor_sample pox qox pox_cutoff isArtifactMode oxoGCut POTEC 388468 broad.mit.edu 37 18 14513764 14513764 + Missense_Mutation SNP C C T TCGA-2A-AAYO-01A-11D-A41K-08 TCGA-2A-AAYO-10A-01D-A41N-08 Untested Somatic Phase_I WXS none Illumina GAIIx f519e32d-0ee8-4f58-975c-3d717fb4e774 441ada11-8a1f-40e6-8c6e-6ba3b7c22b4b g.chr18:14513764C>T ENST00000358970.5 - 10 1429 c.1430G>A c.(1429-1431)cGg>cAg p.R477Q NM_001137671.1 NP_001131143.1 B2RU33 POTEC_HUMAN POTE ankyrin domain family, member C 477 p.R477Q(12) NS(2)|breast(1)|endometrium(9)|kidney(13)|lung(14)|prostate(3)|skin(6)|soft_tissue(1)|urinary_tract(3) 52 AAGTTGTTTCCGGGTATCATT 0.358000 5 75 0 0 1 0 0 THBS4 7060 broad.mit.edu 37 5 79366954 79366954 + Silent SNP C C T TCGA-2A-AAYO-01A-11D-A41K-08 TCGA-2A-AAYO-10A-01D-A41N-08 Untested Somatic Phase_I WXS none Illumina GAIIx f519e32d-0ee8-4f58-975c-3d717fb4e774 441ada11-8a1f-40e6-8c6e-6ba3b7c22b4b g.chr5:79366954C>T ENST00000350881.2 + 13 1861 c.1671C>T c.(1669-1671)acC>acT p.T557T CTD-2201I18.1_ENST00000514042.1_RNA|CTD-2201I18.1_ENST00000503007.1_RNA|THBS4_ENST00000511733.1_Silent_p.T466T NM_003248.4 NP_003239.2 P35443 TSP4_HUMAN thrombospondin 4 557 endothelial cell-cell adhesion|myoblast migration|negative regulation of angiogenesis|positive regulation of endothelial cell proliferation|positive regulation of neutrophil chemotaxis|positive regulation of peptidyl-tyrosine phosphorylation basement membrane|extracellular space calcium ion binding|heparin binding|integrin binding|structural molecule activity breast(1)|endometrium(4)|kidney(2)|large_intestine(9)|lung(14)|ovary(1)|stomach(3) 34 Lung NSC(167;0.00328)|all_lung(232;0.00355)|Ovarian(174;0.0261) OV - Ovarian serous cystadenocarcinoma(54;6.3e-45)|Epithelial(54;1.77e-39)|all cancers(79;3.2e-34) AGAAAGACACCGATGGGGATG 0.418000 60 117 0 0 1 0 0 MGLL 11343 broad.mit.edu 37 3 127500647 127500647 + Missense_Mutation SNP A A G TCGA-2A-AAYO-01A-11D-A41K-08 TCGA-2A-AAYO-10A-01D-A41N-08 Untested Somatic Phase_I WXS none Illumina GAIIx f519e32d-0ee8-4f58-975c-3d717fb4e774 441ada11-8a1f-40e6-8c6e-6ba3b7c22b4b g.chr3:127500647A>G ENST00000434178.2 - 3 1113 c.217T>C c.(217-219)Ttc>Ctc p.F73L MGLL_ENST00000453507.2_Missense_Mutation_p.F83L|MGLL_ENST00000398104.1_Missense_Mutation_p.F73L|MGLL_ENST00000265052.5_Missense_Mutation_p.F83L Q99685 MGLL_HUMAN monoglyceride lipase 73 arachidonic acid metabolic process|fatty acid biosynthetic process|inflammatory response|platelet activation|regulation of endocannabinoid signaling pathway|regulation of inflammatory response|regulation of sensory perception of pain|triglyceride catabolic process plasma membrane acylglycerol lipase activity|carboxylesterase activity|lysophospholipase activity|protein homodimerization activity cervix(1)|endometrium(1)|haematopoietic_and_lymphoid_tissue(1)|large_intestine(1)|lung(2) 6 TCGTGGGCGAACACCAGCAGG 0.607000 11 37 0 0 1 0 0 REM2 161253 broad.mit.edu 37 14 23354496 23354496 + Missense_Mutation SNP T T C TCGA-2A-AAYO-01A-11D-A41K-08 TCGA-2A-AAYO-10A-01D-A41N-08 Untested Somatic Phase_I WXS none Illumina GAIIx f519e32d-0ee8-4f58-975c-3d717fb4e774 441ada11-8a1f-40e6-8c6e-6ba3b7c22b4b g.chr14:23354496T>C ENST00000267396.4 + 3 590 c.467T>C c.(466-468)aTc>aCc p.I156T REM2_ENST00000536884.1_Intron NM_173527.2 NP_775798.2 Q8IYK8 REM2_HUMAN RAS (RAD and GEM)-like GTP binding 2 156 regulation of transcription, DNA-dependent|small GTPase mediated signal transduction intracellular|plasma membrane ATP binding|GTP binding|transcription factor binding breast(1)|central_nervous_system(1)|large_intestine(2)|ovary(1) 5 all_cancers(95;4.69e-05) GBM - Glioblastoma multiforme(265;0.012) GAGAGACGCATCATGGTGGAT 0.488000 12 62 0 0 1 0 0 ZC3H18 124245 broad.mit.edu 37 16 88691151 88691151 + Missense_Mutation SNP G G T TCGA-2A-AAYO-01A-11D-A41K-08 TCGA-2A-AAYO-10A-01D-A41N-08 Untested Somatic Phase_I WXS none Illumina GAIIx f519e32d-0ee8-4f58-975c-3d717fb4e774 441ada11-8a1f-40e6-8c6e-6ba3b7c22b4b g.chr16:88691151G>T ENST00000301011.5 + 12 2240 c.2040G>T c.(2038-2040)agG>agT p.R680S ZC3H18_ENST00000452588.2_Missense_Mutation_p.R704S NM_144604.3 NP_653205.3 Q86VM9 ZCH18_HUMAN zinc finger CCCH-type containing 18 680 Ser-rich. nucleus nucleic acid binding|zinc ion binding endometrium(5)|haematopoietic_and_lymphoid_tissue(2)|kidney(6)|large_intestine(9)|lung(16)|ovary(1)|skin(2)|upper_aerodigestive_tract(1) 42 BRCA - Breast invasive adenocarcinoma(80;0.0542) CCCCCCCCAGGAGGTGAGCAC 0.662000 8 8 2.52707e-12 2.67147e-12 1 1 0 FRG1B 0 broad.mit.edu 37 20 29625875 29625875 + Missense_Mutation SNP T T C rs143761036 by1000genomes TCGA-2A-AAYO-01A-11D-A41K-08 TCGA-2A-AAYO-10A-01D-A41N-08 Untested Somatic Phase_I WXS none Illumina GAIIx f519e32d-0ee8-4f58-975c-3d717fb4e774 441ada11-8a1f-40e6-8c6e-6ba3b7c22b4b g.chr20:29625875T>C ENST00000278882.3 + 5 499 c.119T>C c.(118-120)aTc>aCc p.I40T FRG1B_ENST00000439954.2_Missense_Mutation_p.I45T|FRG1B_ENST00000358464.4_Missense_Mutation_p.I40T p.I40T(4) endometrium(10)|kidney(21)|lung(3)|pancreas(1)|prostate(9)|urinary_tract(9) 53 ATGTACAGAATCGCCCTGAAA 0.358000 5 74 0 0 1 0 0 HPDL 84842 broad.mit.edu 37 1 45793570 45793570 + Silent SNP G G A rs150145508 byFrequency TCGA-2A-AAYO-01A-11D-A41K-08 TCGA-2A-AAYO-10A-01D-A41N-08 Untested Somatic Phase_I WXS none Illumina GAIIx f519e32d-0ee8-4f58-975c-3d717fb4e774 441ada11-8a1f-40e6-8c6e-6ba3b7c22b4b g.chr1:45793570G>A ENST00000334815.3 + 1 1026 c.750G>A c.(748-750)cgG>cgA p.R250R NM_032756.2 NP_116145.1 Q96IR7 HPDL_HUMAN 4-hydroxyphenylpyruvate dioxygenase-like 250 aromatic amino acid family metabolic process 4-hydroxyphenylpyruvate dioxygenase activity|metal ion binding p.R250R(1) endometrium(1)|kidney(1)|large_intestine(1)|lung(1) 4 Acute lymphoblastic leukemia(166;0.155) TCCTGGCCCGGCACAAGGGGC 0.662000 4 102 0 0 1 0 0 SYNE1 23345 broad.mit.edu 37 6 152804276 152804276 + Missense_Mutation SNP G G C TCGA-2A-AAYO-01A-11D-A41K-08 TCGA-2A-AAYO-10A-01D-A41N-08 Untested Somatic Phase_I WXS none Illumina GAIIx f519e32d-0ee8-4f58-975c-3d717fb4e774 441ada11-8a1f-40e6-8c6e-6ba3b7c22b4b g.chr6:152804276G>C ENST00000367255.5 - 14 1895 c.1294C>G c.(1294-1296)Caa>Gaa p.Q432E SYNE1_ENST00000265368.4_Missense_Mutation_p.Q432E|SYNE1_ENST00000466159.2_Missense_Mutation_p.Q432E|SYNE1_ENST00000367248.3_Missense_Mutation_p.Q422E|SYNE1_ENST00000367253.4_Missense_Mutation_p.Q432E|SYNE1_ENST00000448038.1_Missense_Mutation_p.Q439E|SYNE1_ENST00000413186.2_Missense_Mutation_p.Q432E|SYNE1_ENST00000423061.1_Missense_Mutation_p.Q439E|SYNE1_ENST00000341594.5_Missense_Mutation_p.Q432E NM_182961.3 NP_892006.3 Q8NF91 SYNE1_HUMAN spectrin repeat containing, nuclear envelope 1 432 cell death|cytoskeletal anchoring at nuclear membrane|Golgi organization|muscle cell differentiation|nuclear matrix anchoring at nuclear membrane cytoskeleton|Golgi apparatus|integral to membrane|nuclear outer membrane|postsynaptic membrane|sarcomere|SUN-KASH complex actin binding|lamin binding NS(3)|biliary_tract(1)|breast(17)|central_nervous_system(21)|cervix(3)|endometrium(27)|haematopoietic_and_lymphoid_tissue(4)|kidney(16)|large_intestine(138)|liver(1)|lung(190)|ovary(11)|pancreas(5)|prostate(12)|skin(20)|stomach(3)|upper_aerodigestive_tract(33)|urinary_tract(19) 524 Ovarian(120;0.0955) BRCA - Breast invasive adenocarcinoma(37;0.243) OV - Ovarian serous cystadenocarcinoma(155;2.24e-10) TGGACCTGTTGAACGGTTATT 0.483000 HNSCC(10;0.0054) 28 99 0 0 1 0 0 SLC45A1 50651 broad.mit.edu 37 1 8404029 8404029 + Missense_Mutation SNP G G C TCGA-2A-AAYO-01A-11D-A41K-08 TCGA-2A-AAYO-10A-01D-A41N-08 Untested Somatic Phase_I WXS none Illumina GAIIx f519e32d-0ee8-4f58-975c-3d717fb4e774 441ada11-8a1f-40e6-8c6e-6ba3b7c22b4b g.chr1:8404029G>C ENST00000471889.1 + 9 2588 c.2203G>C c.(2203-2205)Gac>Cac p.D735H SLC45A1_ENST00000377479.2_Missense_Mutation_p.D769H|SLC45A1_ENST00000289877.8_Missense_Mutation_p.D735H Q9Y2W3 S45A1_HUMAN solute carrier family 45, member 1 735 carbohydrate transport integral to membrane symporter activity central_nervous_system(2)|endometrium(1)|haematopoietic_and_lymphoid_tissue(1)|kidney(1)|large_intestine(3)|liver(1)|lung(12)|ovary(2)|pancreas(2)|prostate(4)|skin(2)|urinary_tract(2) 33 Ovarian(185;0.0661)|all_lung(157;0.127) all_epithelial(116;1.22e-15)|all_lung(118;0.000147)|Lung NSC(185;0.000251)|Renal(390;0.000469)|Colorectal(325;0.00578)|Breast(348;0.00686)|Hepatocellular(190;0.0228)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.11) UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|all cancers(8;3.95e-66)|GBM - Glioblastoma multiforme(8;5.93e-33)|Colorectal(212;2.86e-07)|COAD - Colon adenocarcinoma(227;3.11e-05)|Kidney(185;5.33e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000513)|KIRC - Kidney renal clear cell carcinoma(229;0.000979)|STAD - Stomach adenocarcinoma(132;0.00199)|READ - Rectum adenocarcinoma(331;0.0649) TCCTCCCAGCGACGCTGCAGA 0.632000 8 33 0 0 1 0 0 SPTB 6710 broad.mit.edu 37 14 65239641 65239641 + Missense_Mutation SNP C C T TCGA-2A-AAYO-01A-11D-A41K-08 TCGA-2A-AAYO-10A-01D-A41N-08 Untested Somatic Phase_I WXS none Illumina GAIIx f519e32d-0ee8-4f58-975c-3d717fb4e774 441ada11-8a1f-40e6-8c6e-6ba3b7c22b4b g.chr14:65239641C>T ENST00000389722.3 - 25 5263 c.5210G>A c.(5209-5211)cGg>cAg p.R1737Q SPTB_ENST00000556626.1_Missense_Mutation_p.R1737Q|SPTB_ENST00000542895.1_Missense_Mutation_p.R1737Q|SPTB_ENST00000389720.3_Missense_Mutation_p.R1737Q|SPTB_ENST00000389721.5_Missense_Mutation_p.R1737Q NM_001024858.2 NP_001020029.1 P11277 SPTB1_HUMAN spectrin, beta, erythrocytic 1737 actin filament capping|axon guidance cell surface|cytosol|intrinsic to internal side of plasma membrane|protein complex|spectrin|spectrin-associated cytoskeleton actin filament binding|structural constituent of cytoskeleton breast(5)|central_nervous_system(4)|endometrium(10)|haematopoietic_and_lymphoid_tissue(1)|kidney(6)|large_intestine(18)|lung(36)|ovary(8)|pancreas(1)|prostate(4)|skin(10)|urinary_tract(3) 106 all_lung(585;4.15e-09) all cancers(60;4.33e-34)|OV - Ovarian serous cystadenocarcinoma(108;8.32e-20)|BRCA - Breast invasive adenocarcinoma(234;0.0628) CCCGGTCTCCCGGGCAAAGTC 0.627000 11 12 0 0 1 0 0 NPR1 4881 broad.mit.edu 37 1 153661480 153661480 + Silent SNP C C T rs145546823 TCGA-2A-AAYO-01A-11D-A41K-08 TCGA-2A-AAYO-10A-01D-A41N-08 Untested Somatic Phase_I WXS none Illumina GAIIx f519e32d-0ee8-4f58-975c-3d717fb4e774 441ada11-8a1f-40e6-8c6e-6ba3b7c22b4b g.chr1:153661480C>T ENST00000368680.3 + 16 2941 c.2469C>T c.(2467-2469)taC>taT p.Y823Y NM_000906.3 NP_000897.3 P16066 ANPRA_HUMAN natriuretic peptide receptor A/guanylate cyclase A (atrionatriuretic peptide receptor A) 823 body fluid secretion|intracellular signal transduction|negative regulation of angiogenesis|negative regulation of cell growth|positive regulation of renal sodium excretion|positive regulation of urine volume|receptor guanylyl cyclase signaling pathway|regulation of blood pressure|regulation of blood vessel size|regulation of vascular permeability|regulation of vasodilation ATP binding|GTP binding|guanylate cyclase activity|natriuretic peptide receptor activity|peptide receptor activity, G-protein coupled|protein kinase activity NS(1)|breast(1)|endometrium(2)|kidney(1)|large_intestine(8)|liver(1)|lung(17)|ovary(4)|prostate(2)|skin(3)|stomach(1)|upper_aerodigestive_tract(1) 42 all_lung(78;3.75e-32)|Lung NSC(65;1.37e-30)|Hepatocellular(266;0.0877)|Melanoma(130;0.199) LUSC - Lung squamous cell carcinoma(543;0.151) Erythrityl Tetranitrate(DB01613)|Isosorbide Dinitrate(DB00883)|Isosorbide Mononitrate(DB01020)|Nesiritide(DB04899)|Nitric Oxide(DB00435)|Nitroglycerin(DB00727)|Nitroprusside(DB00325) TGGAGCAGTACGCGAACAATC 0.622000 32 74 0 0 1 0 0 RP11-417J8.6 0 broad.mit.edu 37 1 142713773 142713773 + RNA SNP C C G TCGA-2A-AAYO-01A-11D-A41K-08 TCGA-2A-AAYO-10A-01D-A41N-08 Untested Somatic Phase_I WXS none Illumina GAIIx f519e32d-0ee8-4f58-975c-3d717fb4e774 441ada11-8a1f-40e6-8c6e-6ba3b7c22b4b g.chr1:142713773C>G ENST00000369381.2 - 0 832 TCTTTTTCCACATTGTCATTT 0.284000 3 52 0 0 1 0 0 MYH8 4626 broad.mit.edu 37 17 10305040 10305040 + Missense_Mutation SNP T T A TCGA-2A-AAYO-01A-11D-A41K-08 TCGA-2A-AAYO-10A-01D-A41N-08 Untested Somatic Phase_I WXS none Illumina GAIIx f519e32d-0ee8-4f58-975c-3d717fb4e774 441ada11-8a1f-40e6-8c6e-6ba3b7c22b4b g.chr17:10305040T>A ENST00000403437.2 - 23 2845 c.2751A>T c.(2749-2751)caA>caT p.Q917H CTC-297N7.7_ENST00000587182.1_RNA|CTC-297N7.7_ENST00000399342.2_RNA|CTC-297N7.7_ENST00000581304.1_RNA NM_002472.2 NP_002463.2 P13535 MYH8_HUMAN myosin, heavy chain 8, skeletal muscle, perinatal 917 muscle filament sliding cytosol|muscle myosin complex|myofibril|myosin filament actin binding|ATP binding|calmodulin binding|motor activity|structural constituent of muscle NS(3)|breast(8)|central_nervous_system(2)|endometrium(11)|haematopoietic_and_lymphoid_tissue(1)|kidney(5)|large_intestine(23)|lung(61)|ovary(3)|prostate(3)|skin(10)|upper_aerodigestive_tract(2)|urinary_tract(2) 134 TGGCCTCAAGTTGGATTTTGT 0.428000 Trismus-Pseudocamptodactyly Syndrome with Cardiac Myxoma and Freckling 7 163 0 0 1 0 0 OR6X1 390260 broad.mit.edu 37 11 123624320 123624320 + Missense_Mutation SNP T T C TCGA-2A-AAYO-01A-11D-A41K-08 TCGA-2A-AAYO-10A-01D-A41N-08 Untested Somatic Phase_I WXS none Illumina GAIIx f519e32d-0ee8-4f58-975c-3d717fb4e774 441ada11-8a1f-40e6-8c6e-6ba3b7c22b4b g.chr11:123624320T>C ENST00000327930.2 - 1 933 c.907A>G c.(907-909)Atg>Gtg p.M303V NM_001005188.1 NP_001005188.1 Q8NH79 OR6X1_HUMAN olfactory receptor, family 6, subfamily X, member 1 303 sensory perception of smell integral to membrane|plasma membrane olfactory receptor activity breast(3)|endometrium(3)|large_intestine(4)|lung(8)|ovary(2)|prostate(1)|skin(2) 23 Breast(109;0.0109)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.224) BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0279) GGGCAAGTCATTGCCTTTCTT 0.398000 55 126 0 0 1 0 0 TTN 7273 broad.mit.edu 37 2 179425802 179425802 + Missense_Mutation SNP C C T TCGA-2A-AAYO-01A-11D-A41K-08 TCGA-2A-AAYO-10A-01D-A41N-08 Untested Somatic Phase_I WXS none Illumina GAIIx f519e32d-0ee8-4f58-975c-3d717fb4e774 441ada11-8a1f-40e6-8c6e-6ba3b7c22b4b g.chr2:179425802C>T ENST00000589042.1 - 326 85281 c.85057G>A c.(85057-85059)Gag>Aag p.E28353K TTN-AS1_ENST00000590932.1_RNA|TTN-AS1_ENST00000590807.1_RNA|TTN-AS1_ENST00000586831.1_RNA|TTN_ENST00000591111.1_Missense_Mutation_p.E26712K|TTN-AS1_ENST00000586452.1_RNA|TTN-AS1_ENST00000585451.1_RNA|TTN_ENST00000460472.2_Missense_Mutation_p.E19288K|TTN-AS1_ENST00000592750.1_RNA|TTN-AS1_ENST00000592689.1_RNA|TTN-AS1_ENST00000438095.1_RNA|TTN-AS1_ENST00000591332.1_RNA|TTN-AS1_ENST00000456053.1_RNA|TTN-AS1_ENST00000592630.1_RNA|TTN-AS1_ENST00000419746.1_RNA|TTN_ENST00000359218.5_Missense_Mutation_p.E19413K|TTN_ENST00000342992.6_Missense_Mutation_p.E25785K|TTN_ENST00000342175.6_Missense_Mutation_p.E19480K|TTN-AS1_ENST00000592600.1_RNA|TTN-AS1_ENST00000586707.1_RNA NM_001267550.1 NP_001254479.1 Q8WZ42 TITIN_HUMAN titin 26712 Fibronectin type-III 106. ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity NS(24)|autonomic_ganglia(1)|breast(64)|central_nervous_system(14)|cervix(14)|endometrium(96)|haematopoietic_and_lymphoid_tissue(16)|kidney(91)|large_intestine(303)|liver(1)|lung(595)|ovary(58)|pancreas(17)|prostate(38)|skin(60)|stomach(29)|upper_aerodigestive_tract(1)|urinary_tract(26) 1448 OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134) CTTGGAGGCTCAACATCATCT 0.443000 48 90 0 0 1 0 0 PLXND1 23129 broad.mit.edu 37 3 129279278 129279278 + Splice_Site SNP C C T TCGA-2A-AAYO-01A-11D-A41K-08 TCGA-2A-AAYO-10A-01D-A41N-08 Untested Somatic Phase_I WXS none Illumina GAIIx f519e32d-0ee8-4f58-975c-3d717fb4e774 441ada11-8a1f-40e6-8c6e-6ba3b7c22b4b g.chr3:129279278C>T ENST00000393239.1 - 31 5207 c.e31-1 PLXND1_ENST00000324093.4_Splice_Site Q9Y4D7 PLXD1_HUMAN plexin D1 axon guidance integral to membrane|intracellular|plasma membrane PLXND1/TMCC1(4) NS(1)|breast(1)|endometrium(4)|kidney(5)|large_intestine(17)|lung(28)|prostate(10)|stomach(3)|upper_aerodigestive_tract(1)|urinary_tract(2) 72 TAGGCAGCACCTGGGAGGCCG 0.652000 4 14 0 0 1 0 0 RP1 6101 broad.mit.edu 37 8 55541954 55541954 + Missense_Mutation SNP C C T TCGA-2A-AAYO-01A-11D-A41K-08 TCGA-2A-AAYO-10A-01D-A41N-08 Untested Somatic Phase_I WXS none Illumina GAIIx f519e32d-0ee8-4f58-975c-3d717fb4e774 441ada11-8a1f-40e6-8c6e-6ba3b7c22b4b g.chr8:55541954C>T ENST00000220676.1 + 4 5660 c.5512C>T c.(5512-5514)Cgc>Tgc p.R1838C NM_006269.1 NP_006260.1 P56715 RP1_HUMAN retinitis pigmentosa 1 (autosomal dominant) 1838 axoneme assembly|intracellular signal transduction|photoreceptor cell maintenance|photoreceptor cell outer segment organization|phototransduction, visible light|retinal cone cell development|retinal rod cell development cilium axoneme|cytoplasm|microtubule|microtubule associated complex|photoreceptor connecting cilium|photoreceptor inner segment|photoreceptor outer segment microtubule binding NS(4)|breast(6)|central_nervous_system(2)|cervix(1)|endometrium(9)|haematopoietic_and_lymphoid_tissue(4)|kidney(7)|large_intestine(29)|lung(69)|ovary(6)|pancreas(1)|prostate(9)|skin(17)|upper_aerodigestive_tract(3)|urinary_tract(2) 169 all_lung(136;0.0831)|Lung NSC(129;0.109)|all_epithelial(80;0.123) OV - Ovarian serous cystadenocarcinoma(7;4.4e-07)|Epithelial(17;3.37e-05)|all cancers(17;0.000285) GCTGGATGTTCGCAATGAAAC 0.423000 17 25 0 0 1 0 0 JAG1 182 broad.mit.edu 37 20 10620426 10620426 + Missense_Mutation SNP A A G TCGA-2A-AAYO-01A-11D-A41K-08 TCGA-2A-AAYO-10A-01D-A41N-08 Untested Somatic Phase_I WXS none Illumina GAIIx f519e32d-0ee8-4f58-975c-3d717fb4e774 441ada11-8a1f-40e6-8c6e-6ba3b7c22b4b g.chr20:10620426A>G ENST00000254958.5 - 26 3892 c.3377T>C c.(3376-3378)aTt>aCt p.I1126T JAG1_ENST00000423891.2_Missense_Mutation_p.I967T NM_000214.2 NP_000205.1 P78504 JAG1_HUMAN jagged 1 1126 angiogenesis|cell communication|cell fate determination|endothelial cell differentiation|hemopoiesis|keratinocyte differentiation|myoblast differentiation|Notch receptor processing|Notch signaling pathway|regulation of cell migration|regulation of cell proliferation extracellular region|integral to plasma membrane calcium ion binding|growth factor activity|Notch binding|structural molecule activity biliary_tract(1)|breast(2)|central_nervous_system(3)|cervix(1)|endometrium(6)|kidney(3)|large_intestine(10)|lung(14)|ovary(2)|pancreas(1)|urinary_tract(1) 44 ATGTTTCTCAATGGGGTTTTT 0.512000 Alagille Syndrome 27 45 0 0 1 0 0 ACTR3B 57180 broad.mit.edu 37 7 152549245 152549245 + Missense_Mutation SNP G G A TCGA-2A-AAYO-01A-11D-A41K-08 TCGA-2A-AAYO-10A-01D-A41N-08 Untested Somatic Phase_I WXS none Illumina GAIIx f519e32d-0ee8-4f58-975c-3d717fb4e774 441ada11-8a1f-40e6-8c6e-6ba3b7c22b4b g.chr7:152549245G>A ENST00000256001.8 + 10 1120 c.986G>A c.(985-987)aGg>aAg p.R329K ACTR3B_ENST00000377776.3_Intron|ACTR3B_ENST00000537264.1_Missense_Mutation_p.R241K|ACTR3B_ENST00000397282.2_Missense_Mutation_p.R241K NM_020445.5 NP_065178.1 Q9P1U1 ARP3B_HUMAN ARP3 actin-related protein 3 homolog B (yeast) 329 regulation of actin filament polymerization cell projection|cytoplasm|cytoskeleton actin binding|ATP binding breast(1)|kidney(1)|large_intestine(1)|lung(8)|ovary(1)|prostate(1) 13 all_hematologic(28;0.0592)|Prostate(32;0.191) OV - Ovarian serous cystadenocarcinoma(82;0.0287) UCEC - Uterine corpus endometrioid carcinoma (81;0.0434) ACCATGTTCAGGGATTTCGGA 0.592000 22 48 0 0 1 0 0 ITGAD 3681 broad.mit.edu 37 16 31434512 31434512 + Splice_Site SNP G G A TCGA-2A-AAYO-01A-11D-A41K-08 TCGA-2A-AAYO-10A-01D-A41N-08 Untested Somatic Phase_I WXS none Illumina GAIIx f519e32d-0ee8-4f58-975c-3d717fb4e774 441ada11-8a1f-40e6-8c6e-6ba3b7c22b4b g.chr16:31434512G>A ENST00000389202.2 + 24 2907 c.2859_splice c.e24+1 p.R953_splice NM_005353.2 NP_005344.2 Q13349 ITAD_HUMAN integrin, alpha D 953 cell-cell adhesion|cell-matrix adhesion|immune response|integrin-mediated signaling pathway integrin complex receptor activity breast(1)|central_nervous_system(1)|endometrium(1)|haematopoietic_and_lymphoid_tissue(1)|kidney(2)|large_intestine(10)|liver(2)|lung(43)|ovary(1)|prostate(2)|skin(4)|upper_aerodigestive_tract(2)|urinary_tract(1) 71 CATCGATACCGTGTGAGAGTC 0.512000 13 26 0 0 1 0 0 TNRC6C 57690 broad.mit.edu 37 17 76094486 76094486 + Missense_Mutation SNP C C G TCGA-2A-AAYO-01A-11D-A41K-08 TCGA-2A-AAYO-10A-01D-A41N-08 Untested Somatic Phase_I WXS none Illumina GAIIx f519e32d-0ee8-4f58-975c-3d717fb4e774 441ada11-8a1f-40e6-8c6e-6ba3b7c22b4b g.chr17:76094486C>G ENST00000335749.4 + 18 5046 c.4477C>G c.(4477-4479)Ctg>Gtg p.L1493V TNRC6C_ENST00000588847.1_Missense_Mutation_p.L1493V|TNRC6C_ENST00000301624.4_Missense_Mutation_p.L1457V|TNRC6C_ENST00000541771.1_Missense_Mutation_p.L1457V|TNRC6C_ENST00000588061.1_Missense_Mutation_p.L1457V|TNRC6C_ENST00000544502.1_Missense_Mutation_p.L1493V NM_001142640.1 NP_001136112.1 Q9HCJ0 TNR6C_HUMAN trinucleotide repeat containing 6C 1457 Sufficient for translational repression when tethered to a target mRNA. gene silencing by RNA|regulation of translation nucleotide binding|RNA binding NS(1)|breast(1)|central_nervous_system(1)|cervix(1)|endometrium(6)|kidney(1)|large_intestine(9)|lung(16)|ovary(1)|prostate(1)|skin(1)|urinary_tract(1) 40 BRCA - Breast invasive adenocarcinoma(99;0.00269)|Lung(188;0.0973) GCAAGCCTCTCTGTCTCATGA 0.552000 9 23 0 0 1 0 0 RP11-1166P10.6 0 broad.mit.edu 37 16 32070612 32070612 + RNA SNP A A C TCGA-2A-AAYO-01A-11D-A41K-08 TCGA-2A-AAYO-10A-01D-A41N-08 Untested Somatic Phase_I WXS none Illumina GAIIx f519e32d-0ee8-4f58-975c-3d717fb4e774 441ada11-8a1f-40e6-8c6e-6ba3b7c22b4b g.chr16:32070612A>C ENST00000566806.1 - 0 499 GGTCTCCTGCAAGGCTTCTGG 0.552000 3 46 0 0 1 0 0 TAOK2 9344 broad.mit.edu 37 16 29999004 29999004 + Silent SNP C C T TCGA-2A-AAYO-01A-11D-A41K-08 TCGA-2A-AAYO-10A-01D-A41N-08 Untested Somatic Phase_I WXS none Illumina GAIIx f519e32d-0ee8-4f58-975c-3d717fb4e774 441ada11-8a1f-40e6-8c6e-6ba3b7c22b4b g.chr16:29999004C>T ENST00000308893.4 + 16 4454 c.3411C>T c.(3409-3411)ccC>ccT p.P1137P TAOK2_ENST00000279394.3_Intron|TAOK2_ENST00000543033.1_Silent_p.P1024P|TAOK2_ENST00000416441.2_Silent_p.P964P NM_001252043.1|NM_016151.3 NP_001238972.1|NP_057235.2 Q9UL54 TAOK2_HUMAN TAO kinase 2 1137 actin cytoskeleton organization|activation of MAPKK activity|apoptosis|cell migration|focal adhesion assembly|positive regulation of JNK cascade|protein targeting to membrane|regulation of cell growth|regulation of cell shape|response to stress cytoplasmic vesicle membrane|cytoskeleton|dendrite|integral to membrane|nucleolus ATP binding|protein serine/threonine kinase activity breast(1)|endometrium(3)|large_intestine(5)|lung(8)|ovary(1)|prostate(3)|skin(1) 22 GGCGTAATCCCCGCACCACCC 0.657000 4 169 0 0 1 0 0 ZMYND15 84225 broad.mit.edu 37 17 4643959 4643959 + Missense_Mutation SNP G G A TCGA-2A-AAYO-01A-11D-A41K-08 TCGA-2A-AAYO-10A-01D-A41N-08 Untested Somatic Phase_I WXS none Illumina GAIIx f519e32d-0ee8-4f58-975c-3d717fb4e774 441ada11-8a1f-40e6-8c6e-6ba3b7c22b4b g.chr17:4643959G>A ENST00000433935.1 + 2 173 c.116G>A c.(115-117)cGc>cAc p.R39H ZMYND15_ENST00000573751.2_Missense_Mutation_p.R39H|ZMYND15_ENST00000592813.1_Missense_Mutation_p.R39H|ZMYND15_ENST00000269289.6_Missense_Mutation_p.R39H NM_001136046.2|NM_001267822.1 NP_001129518.1|NP_001254751.1 Q9H091 ZMY15_HUMAN zinc finger, MYND-type containing 15 39 zinc ion binding endometrium(5)|large_intestine(3)|lung(6)|ovary(1)|prostate(1)|skin(2) 18 CTTGAGGGCCGCTGCCGGCAG 0.607000 13 14 0 0 1 0 0 WDPCP 51057 broad.mit.edu 37 2 63660945 63660945 + Silent SNP G G T TCGA-2A-AAYO-01A-11D-A41K-08 TCGA-2A-AAYO-10A-01D-A41N-08 Untested Somatic Phase_I WXS none Illumina GAIIx f519e32d-0ee8-4f58-975c-3d717fb4e774 441ada11-8a1f-40e6-8c6e-6ba3b7c22b4b g.chr2:63660945G>T ENST00000409120.1 - 3 3733 c.183C>A c.(181-183)gcC>gcA p.A61A WDPCP_ENST00000409562.3_Silent_p.A253A|WDPCP_ENST00000409835.1_5'UTR|WDPCP_ENST00000409199.1_Silent_p.A61A|WDPCP_ENST00000398544.3_Silent_p.A94A|WDPCP_ENST00000272321.7_Silent_p.A253A O95876 FRITZ_HUMAN WD repeat containing planar cell polarity effector 253 cilium morphogenesis|regulation of embryonic cell shape|regulation of protein localization|septin cytoskeleton organization cilium axoneme|cytoplasm|cytoskeleton|plasma membrane central_nervous_system(1)|endometrium(3)|kidney(1)|large_intestine(9)|lung(19)|ovary(1)|skin(1) 35 AAGAAATGGGGGCCCAAGGCC 0.423000 17 33 5.3912e-06 5.54096e-06 1 1 0 SEMA6A 57556 broad.mit.edu 37 5 115814379 115814379 + Missense_Mutation SNP G G A TCGA-2A-AAYO-01A-11D-A41K-08 TCGA-2A-AAYO-10A-01D-A41N-08 Untested Somatic Phase_I WXS none Illumina GAIIx f519e32d-0ee8-4f58-975c-3d717fb4e774 441ada11-8a1f-40e6-8c6e-6ba3b7c22b4b g.chr5:115814379G>A ENST00000343348.6 - 13 2073 c.1286C>T c.(1285-1287)gCt>gTt p.A429V SEMA6A_ENST00000257414.8_Missense_Mutation_p.A429V|SEMA6A_ENST00000510263.1_Missense_Mutation_p.A429V|CTB-118N6.3_ENST00000514214.1_RNA|CTB-118N6.3_ENST00000510682.1_RNA|CTB-118N6.3_ENST00000508640.1_RNA NM_020796.3 NP_065847.1 Q9H2E6 SEM6A_HUMAN sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A 429 Sema. apoptosis|axon guidance|cell surface receptor linked signaling pathway|cytoskeleton organization|organ morphogenesis axon|integral to membrane|plasma membrane receptor activity central_nervous_system(1)|endometrium(2)|haematopoietic_and_lymphoid_tissue(1)|kidney(1)|large_intestine(5)|lung(15)|ovary(2)|prostate(1)|upper_aerodigestive_tract(2)|urinary_tract(1) 31 all_cancers(142;0.00316)|all_epithelial(76;5.71e-05)|Prostate(80;0.00845)|Ovarian(225;0.0796)|Lung NSC(810;0.171)|all_lung(232;0.203) OV - Ovarian serous cystadenocarcinoma(64;1.59e-08)|Epithelial(69;2e-08)|all cancers(49;5.7e-08)|COAD - Colon adenocarcinoma(49;0.151) ATATGGCCCAGCAGCTGTGTC 0.408000 4 34 0 0 1 0 0 NBPF3 84224 broad.mit.edu 37 1 21798095 21798095 + Silent SNP A A G TCGA-2A-AAYO-01A-11D-A41K-08 TCGA-2A-AAYO-10A-01D-A41N-08 Untested Somatic Phase_I WXS none Illumina GAIIx f519e32d-0ee8-4f58-975c-3d717fb4e774 441ada11-8a1f-40e6-8c6e-6ba3b7c22b4b g.chr1:21798095A>G ENST00000318220.6 + 8 1360 c.312A>G c.(310-312)cgA>cgG p.R104R NBPF3_ENST00000342104.5_Silent_p.R160R|NBPF3_ENST00000454000.2_Silent_p.R90R|NBPF3_ENST00000318249.5_Silent_p.R160R Q9H094 NBPF3_HUMAN neuroblastoma breakpoint family, member 3 160 cytoplasm breast(1)|endometrium(3)|kidney(1)|large_intestine(2)|lung(4)|ovary(2)|prostate(3)|skin(2)|upper_aerodigestive_tract(2) 20 all_lung(284;2.16e-05)|Lung NSC(340;2.19e-05)|Colorectal(325;3.46e-05)|Renal(390;0.000219)|Breast(348;0.00222)|Ovarian(437;0.00432)|Myeloproliferative disorder(586;0.0255) UCEC - Uterine corpus endometrioid carcinoma (279;0.0181)|OV - Ovarian serous cystadenocarcinoma(117;7.53e-27)|COAD - Colon adenocarcinoma(152;1.18e-05)|GBM - Glioblastoma multiforme(114;3.47e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000143)|STAD - Stomach adenocarcinoma(196;0.00306)|KIRC - Kidney renal clear cell carcinoma(1967;0.00645)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.199) CTCAGGAACGAGAGCTGACCC 0.473000 4 199 0 0 1 0 0 ZNF814 730051 broad.mit.edu 37 19 58385546 58385546 + Missense_Mutation SNP G G T TCGA-2A-AAYO-01A-11D-A41K-08 TCGA-2A-AAYO-10A-01D-A41N-08 Untested Somatic Phase_I WXS none Illumina GAIIx f519e32d-0ee8-4f58-975c-3d717fb4e774 441ada11-8a1f-40e6-8c6e-6ba3b7c22b4b g.chr19:58385546G>T ENST00000435989.2 - 3 1446 c.1212C>A c.(1210-1212)gaC>gaA p.D404E ZNF814_ENST00000600634.1_Intron|ZNF814_ENST00000596604.1_Intron|ZNF814_ENST00000595295.1_Intron|ZNF814_ENST00000597832.1_Intron|ZNF814_ENST00000597342.1_Intron NM_001144989.1 NP_001138461.1 B7Z6K7 ZN814_HUMAN zinc finger protein 814 404 regulation of transcription, DNA-dependent intracellular nucleic acid binding|zinc ion binding p.D404E(10) NS(1)|central_nervous_system(2)|endometrium(3)|kidney(9)|lung(2)|prostate(4)|skin(1)|urinary_tract(3) 25 AATGTTTTTTGTCAGTGTGAA 0.393000 3 8 0.004672 0.004672 1 1 0 MLLT3 4300 broad.mit.edu 37 9 20414340 20414340 + Silent SNP G G A TCGA-2A-AAYO-01A-11D-A41K-08 TCGA-2A-AAYO-10A-01D-A41N-08 Untested Somatic Phase_I WXS none Illumina GAIIx f519e32d-0ee8-4f58-975c-3d717fb4e774 441ada11-8a1f-40e6-8c6e-6ba3b7c22b4b g.chr9:20414340G>A ENST00000380338.4 - 5 790 c.504C>T c.(502-504)agC>agT p.S168S MLLT3_ENST00000475957.1_5'UTR|MLLT3_ENST00000429426.2_Silent_p.S165S|MLLT3_ENST00000355930.6_5'UTR NM_004529.2 NP_004520.2 P42568 AF9_HUMAN myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 3 168 Poly-Ser. regulation of transcription, DNA-dependent|transcription, DNA-dependent nucleus protein binding p.S168S(5) central_nervous_system(1)|cervix(1)|endometrium(13)|haematopoietic_and_lymphoid_tissue(1)|kidney(7)|large_intestine(6)|lung(24)|ovary(1)|prostate(4)|skin(1)|urinary_tract(7) 66 GBM - Glioblastoma multiforme(3;4.35e-105)|Lung(42;3.48e-06)|LUSC - Lung squamous cell carcinoma(42;7.92e-05) tgctgctgctgctactgctgc 0.537000 T MLL ALL 4 41 0 0 1 0 0 STEAP2-AS1 0 broad.mit.edu 37 7 89748927 89748928 + RNA INS - - C rs138239781 by1000genomes TCGA-2A-AAYO-01A-11D-A41K-08 TCGA-2A-AAYO-10A-01D-A41N-08 Untested Somatic Phase_I WXS none Illumina GAIIx f519e32d-0ee8-4f58-975c-3d717fb4e774 441ada11-8a1f-40e6-8c6e-6ba3b7c22b4b g.chr7:89748927_89748928insC ENST00000478318.2 - 0 424 RP5-1121E10.2_ENST00000471553.1_lincRNA|DPY19L2P4_ENST00000497063.1_RNA GGTGCGGGCCTCCCCCTTCCCC 0.639 4 5 --- --- --- --- OMP 4975 broad.mit.edu 37 11 76814332 76814351 + Frame_Shift_Del DEL GGAGCCCGCCAACCTCAAGG GGAGCCCGCCAACCTCAAGG - TCGA-2A-AAYO-01A-11D-A41K-08 TCGA-2A-AAYO-10A-01D-A41N-08 Untested Somatic Phase_I WXS none Illumina GAIIx f519e32d-0ee8-4f58-975c-3d717fb4e774 441ada11-8a1f-40e6-8c6e-6ba3b7c22b4b g.chr11:76814332_76814351delGGAGCCCGCCAACCTCAAGG ENST00000529803.1 + 1 447_466 c.447_466delGGAGCCCGCCAACCTCAAGG c.(445-468)gtccfs p.VEPANLKA149fs CAPN5_ENST00000456580.2_Intron|CAPN5_ENST00000529629.1_Intron|CAPN5_ENST00000278559.3_Intron|CAPN5_ENST00000531028.1_Intron NM_006189.1 NP_006180.1 P47874 OMP_HUMAN olfactory marker protein 149 sensory perception of smell|synaptic transmission endometrium(1)|kidney(1)|large_intestine(2)|lung(1) 5 GCGAGGGTGTGGAGCCCGCCAACCTCAAGGCCTCCGTGGT 0.614 12 58 --- --- --- --- CCDC144B 0 broad.mit.edu 37 17 18498497 18498498 + RNA INS - - A rs72195768 TCGA-2A-AAYO-01A-11D-A41K-08 TCGA-2A-AAYO-10A-01D-A41N-08 Untested Somatic Phase_I WXS none Illumina GAIIx f519e32d-0ee8-4f58-975c-3d717fb4e774 441ada11-8a1f-40e6-8c6e-6ba3b7c22b4b g.chr17:18498497_18498498insA ENST00000442583.1 - 0 749 NS(3)|breast(1)|endometrium(6)|haematopoietic_and_lymphoid_tissue(1)|kidney(3)|large_intestine(9)|lung(6)|ovary(1)|prostate(2)|skin(2)|urinary_tract(2) 36 CTGCAGGCCTGAAAAAAAAAAA 0.243 4 3 --- --- --- --- SMARCA1 6594 broad.mit.edu 37 X 128624063 128624064 + Frame_Shift_Ins INS - - T TCGA-2A-AAYO-01A-11D-A41K-08 TCGA-2A-AAYO-10A-01D-A41N-08 Untested Somatic Phase_I WXS none Illumina GAIIx f519e32d-0ee8-4f58-975c-3d717fb4e774 441ada11-8a1f-40e6-8c6e-6ba3b7c22b4b g.chrX:128624063_128624064insT ENST00000371122.4 - 15 2050_2051 c.1921_1922insA c.(1921-1923)actfs p.T641fs SMARCA1_ENST00000371121.3_Frame_Shift_Ins_p.T629fs|SMARCA1_ENST00000371123.1_Frame_Shift_Ins_p.T629fs NM_003069.3 NP_003060.2 P28370 SMCA1_HUMAN SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1 641 Helicase C-terminal. ATP-dependent chromatin remodeling|brain development|neuron differentiation|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent NURF complex ATP binding|DNA binding|helicase activity|nucleosome binding|protein binding biliary_tract(1)|breast(1)|central_nervous_system(1)|endometrium(7)|haematopoietic_and_lymphoid_tissue(1)|kidney(2)|large_intestine(11)|liver(1)|lung(13)|ovary(5)|prostate(1)|skin(1) 45 TGAATCGAGTCTCAGTTTTATC 0.342 25 12 --- --- --- ---